CuGenDBv2

Gene ID	CmoCh16G012000
Organism	Cucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
Description	late embryogenesis abundant protein 6-like isoform X2
Genome location	Cmo_Chr16:8571852..8572184
RNA-Seq Expression	CmoCh16G012000
Synteny	CmoCh16G012000
Gene Ontology terms	GO:0009793 - embryo development ending in seed dormancy (biological process)
InterPro domains	IPR005513 - Late embryogenesis abundant protein, LEA_1 subgroup

Homology

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GenBank top hits

e value

%identity

Alignment

KAG6577696.1 Late embryogenesis abundant protein 6, partial [Cucurbita argyrosperma subsp. sororia]

5.1e-48

99.09

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Query:  MEKLSNMGSVAKKKLKICRAKLDEKVQKASAKTAEERKIAEERRKAAEAEAKRELHEAKARHAAQKLRTRQSHVVGHRLHHQPPVEGGSAANVPAYPIAS
        MEKLSNMGSVAKKKLKICRAKLDEKVQKASAKTAEERKIAEERRKAAEAEAKRELHEAKARHAAQKLRTRQSHV+GHRLHHQPPVEGGSAANVPAYPIAS
Subjt:  MEKLSNMGSVAKKKLKICRAKLDEKVQKASAKTAEERKIAEERRKAAEAEAKRELHEAKARHAAQKLRTRQSHVVGHRLHHQPPVEGGSAANVPAYPIAS

Query:  PEGYYPGHRI
        PEGYYPGHRI
Subjt:  PEGYYPGHRI

XP_022923386.1 late embryogenesis abundant protein 6-like isoform X1 [Cucurbita moschata]

2.3e-48

100

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Query:  MEKLSNMGSVAKKKLKICRAKLDEKVQKASAKTAEERKIAEERRKAAEAEAKRELHEAKARHAAQKLRTRQSHVVGHRLHHQPPVEGGSAANVPAYPIAS
        MEKLSNMGSVAKKKLKICRAKLDEKVQKASAKTAEERKIAEERRKAAEAEAKRELHEAKARHAAQKLRTRQSHVVGHRLHHQPPVEGGSAANVPAYPIAS
Subjt:  MEKLSNMGSVAKKKLKICRAKLDEKVQKASAKTAEERKIAEERRKAAEAEAKRELHEAKARHAAQKLRTRQSHVVGHRLHHQPPVEGGSAANVPAYPIAS

Query:  PEGYYPGHRI
        PEGYYPGHRI
Subjt:  PEGYYPGHRI

XP_022923387.1 late embryogenesis abundant protein 6-like isoform X2 [Cucurbita moschata]

2.3e-48

100

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Query:  MEKLSNMGSVAKKKLKICRAKLDEKVQKASAKTAEERKIAEERRKAAEAEAKRELHEAKARHAAQKLRTRQSHVVGHRLHHQPPVEGGSAANVPAYPIAS
        MEKLSNMGSVAKKKLKICRAKLDEKVQKASAKTAEERKIAEERRKAAEAEAKRELHEAKARHAAQKLRTRQSHVVGHRLHHQPPVEGGSAANVPAYPIAS
Subjt:  MEKLSNMGSVAKKKLKICRAKLDEKVQKASAKTAEERKIAEERRKAAEAEAKRELHEAKARHAAQKLRTRQSHVVGHRLHHQPPVEGGSAANVPAYPIAS

Query:  PEGYYPGHRI
        PEGYYPGHRI
Subjt:  PEGYYPGHRI

XP_022965230.1 late embryogenesis abundant protein 6-like isoform X1 [Cucurbita maxima]

1.4e-45

95.45

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Query:  MEKLSNMGSVAKKKLKICRAKLDEKVQKASAKTAEERKIAEERRKAAEAEAKRELHEAKARHAAQKLRTRQSHVVGHRLHHQPPVEGGSAANVPAYPIAS
        MEKLSNMGSVAKKKLKICRAKL+EKVQKASAKTAEERKI EERRKAAEAE KRELHEAKARHAAQKLRTRQSHV+GHRLHHQPPVE GSAANVPAYPIAS
Subjt:  MEKLSNMGSVAKKKLKICRAKLDEKVQKASAKTAEERKIAEERRKAAEAEAKRELHEAKARHAAQKLRTRQSHVVGHRLHHQPPVEGGSAANVPAYPIAS

Query:  PEGYYPGHRI
        PEGYYPGHRI
Subjt:  PEGYYPGHRI

XP_023553167.1 late embryogenesis abundant protein 6-like [Cucurbita pepo subsp. pepo]

7.4e-47

97.27

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Query:  MEKLSNMGSVAKKKLKICRAKLDEKVQKASAKTAEERKIAEERRKAAEAEAKRELHEAKARHAAQKLRTRQSHVVGHRLHHQPPVEGGSAANVPAYPIAS
        MEKLSNMGSVAKKKLKICRAKLDE VQKAS KTAEERKIAEERRKAAEAEAKRELHEAKARHAAQKLRTRQSHV+GHRLHHQPPVEGGSAANVPAYPIAS
Subjt:  MEKLSNMGSVAKKKLKICRAKLDEKVQKASAKTAEERKIAEERRKAAEAEAKRELHEAKARHAAQKLRTRQSHVVGHRLHHQPPVEGGSAANVPAYPIAS

Query:  PEGYYPGHRI
        PEGYYPGHRI
Subjt:  PEGYYPGHRI

TrEMBL top hits

e value

%identity

Alignment

A0A5D3CHS9 Seed maturation protein

4.4e-37

81.2

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Query:  MEKLSNMGSVAKKKLKICRAKLDEKVQKASAKTAEERKIAEERRKAAEAEAKRELHEAKARHAAQKLRTRQSHVV-GHRLHHQPPVEGGSA------ANV
        MEKLSNMGSVAK+KLKICRAKLDEKV+KAS KTAEERKI EERRKAA AEAKRELHEAKARHAAQKLR R+SHV+ G  LHH  PVEGG+A       NV
Subjt:  MEKLSNMGSVAKKKLKICRAKLDEKVQKASAKTAEERKIAEERRKAAEAEAKRELHEAKARHAAQKLRTRQSHVV-GHRLHHQPPVEGGSA------ANV

Query:  PAYPIASPEGYYPGHRI
        PAYPIASPEGYYPGH+I
Subjt:  PAYPIASPEGYYPGHRI

A0A6J1E5Y8 late embryogenesis abundant protein 6-like isoform X2

1.1e-48

100

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Query:  MEKLSNMGSVAKKKLKICRAKLDEKVQKASAKTAEERKIAEERRKAAEAEAKRELHEAKARHAAQKLRTRQSHVVGHRLHHQPPVEGGSAANVPAYPIAS
        MEKLSNMGSVAKKKLKICRAKLDEKVQKASAKTAEERKIAEERRKAAEAEAKRELHEAKARHAAQKLRTRQSHVVGHRLHHQPPVEGGSAANVPAYPIAS
Subjt:  MEKLSNMGSVAKKKLKICRAKLDEKVQKASAKTAEERKIAEERRKAAEAEAKRELHEAKARHAAQKLRTRQSHVVGHRLHHQPPVEGGSAANVPAYPIAS

Query:  PEGYYPGHRI
        PEGYYPGHRI
Subjt:  PEGYYPGHRI

A0A6J1E6N7 late embryogenesis abundant protein 6-like isoform X1

1.1e-48

100

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Query:  MEKLSNMGSVAKKKLKICRAKLDEKVQKASAKTAEERKIAEERRKAAEAEAKRELHEAKARHAAQKLRTRQSHVVGHRLHHQPPVEGGSAANVPAYPIAS
        MEKLSNMGSVAKKKLKICRAKLDEKVQKASAKTAEERKIAEERRKAAEAEAKRELHEAKARHAAQKLRTRQSHVVGHRLHHQPPVEGGSAANVPAYPIAS
Subjt:  MEKLSNMGSVAKKKLKICRAKLDEKVQKASAKTAEERKIAEERRKAAEAEAKRELHEAKARHAAQKLRTRQSHVVGHRLHHQPPVEGGSAANVPAYPIAS

Query:  PEGYYPGHRI
        PEGYYPGHRI
Subjt:  PEGYYPGHRI

A0A6J1HL48 late embryogenesis abundant protein 6-like isoform X2

6.7e-46

95.45

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Query:  MEKLSNMGSVAKKKLKICRAKLDEKVQKASAKTAEERKIAEERRKAAEAEAKRELHEAKARHAAQKLRTRQSHVVGHRLHHQPPVEGGSAANVPAYPIAS
        MEKLSNMGSVAKKKLKICRAKL+EKVQKASAKTAEERKI EERRKAAEAE KRELHEAKARHAAQKLRTRQSHV+GHRLHHQPPVE GSAANVPAYPIAS
Subjt:  MEKLSNMGSVAKKKLKICRAKLDEKVQKASAKTAEERKIAEERRKAAEAEAKRELHEAKARHAAQKLRTRQSHVVGHRLHHQPPVEGGSAANVPAYPIAS

Query:  PEGYYPGHRI
        PEGYYPGHRI
Subjt:  PEGYYPGHRI

A0A6J1HN56 late embryogenesis abundant protein 6-like isoform X1

6.7e-46

95.45

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Query:  MEKLSNMGSVAKKKLKICRAKLDEKVQKASAKTAEERKIAEERRKAAEAEAKRELHEAKARHAAQKLRTRQSHVVGHRLHHQPPVEGGSAANVPAYPIAS
        MEKLSNMGSVAKKKLKICRAKL+EKVQKASAKTAEERKI EERRKAAEAE KRELHEAKARHAAQKLRTRQSHV+GHRLHHQPPVE GSAANVPAYPIAS
Subjt:  MEKLSNMGSVAKKKLKICRAKLDEKVQKASAKTAEERKIAEERRKAAEAEAKRELHEAKARHAAQKLRTRQSHVVGHRLHHQPPVEGGSAANVPAYPIAS

Query:  PEGYYPGHRI
        PEGYYPGHRI
Subjt:  PEGYYPGHRI

SwissProt top hits

e value

%identity

Alignment

Q39138 Late embryogenesis abundant protein 6

6.1e-12

45.71

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Query:  EKLSNMGSVAKKKLKICRAKLDEKVQKASAKTAEERKIAEERRKAAEAEAKRELHEAKARHAAQKLRTRQSHVVGHRLHHQPPVEGGSAANVPAYPIASP
        +K+S+M S AK+K+ IC+AK DEK ++A A+T EE++IA +RRKA EAEA  ++H AKA HA  KL  +QSH   H   H P V   +    PA  +   
Subjt:  EKLSNMGSVAKKKLKICRAKLDEKVQKASAKTAEERKIAEERRKAAEAEAKRELHEAKARHAAQKLRTRQSHVVGHRLHHQPPVEGGSAANVPAYPIASP

Query:  EGYYP
         G+ P
Subjt:  EGYYP

Q96273 Late embryogenesis abundant protein 18

2.9e-06

46.05

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Query:  EKLSNMGSVAKKKLKICRAKLDEKVQKASAKTAEERKIAEERRKAAEAEAKRELHEAKARHAAQKLRTRQSHVVGH
        EK+S+M S AK+KL I  AK     +K  A+T +E+K+A+ER K+ EA+AK +LH++KA HAA   +    H+ GH
Subjt:  EKLSNMGSVAKKKLKICRAKLDEKVQKASAKTAEERKIAEERRKAAEAEAKRELHEAKARHAAQKLRTRQSHVVGH

Arabidopsis top hits

e value

%identity

Alignment

AT1G32560.1 Late embryogenesis abundant protein, group 1 protein

4.4e-13

45.71

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Query:  EKLSNMGSVAKKKLKICRAKLDEKVQKASAKTAEERKIAEERRKAAEAEAKRELHEAKARHAAQKLRTRQSHVVGHRLHHQPPVEGGSAANVPAYPIASP
        +K+S+M S AK+K+ IC+AK DEK ++A A+T EE++IA +RRKA EAEA  ++H AKA HA  KL  +QSH   H   H P V   +    PA  +   
Subjt:  EKLSNMGSVAKKKLKICRAKLDEKVQKASAKTAEERKIAEERRKAAEAEAKRELHEAKARHAAQKLRTRQSHVVGHRLHHQPPVEGGSAANVPAYPIASP

Query:  EGYYP
         G+ P
Subjt:  EGYYP

AT2G35300.1 Late embryogenesis abundant protein, group 1 protein

2.1e-07

46.05

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Query:  EKLSNMGSVAKKKLKICRAKLDEKVQKASAKTAEERKIAEERRKAAEAEAKRELHEAKARHAAQKLRTRQSHVVGH
        EK+S+M S AK+KL I  AK     +K  A+T +E+K+A+ER K+ EA+AK +LH++KA HAA   +    H+ GH
Subjt:  EKLSNMGSVAKKKLKICRAKLDEKVQKASAKTAEERKIAEERRKAAEAEAKRELHEAKARHAAQKLRTRQSHVVGH

Sequences

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CDS sequence

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ATGGAGAAGCTCAGCAACATGGGAAGTGTTGCCAAAAAGAAGCTCAAAATTTGTAGAGCCAAACTCGACGAGAAGGTGCAAAAAGCGTCGGCGAAGACAGCGGAGGAGAG
AAAGATTGCGGAGGAGCGGAGGAAGGCGGCGGAGGCAGAGGCGAAGCGGGAGCTACACGAGGCGAAAGCCCGACATGCTGCTCAAAAGCTAAGAACTAGGCAGTCACATG
TAGTTGGCCACCGTTTACACCATCAGCCACCGGTGGAGGGGGGCAGCGCCGCCAATGTTCCCGCTTATCCTATAGCTAGTCCGGAGGGCTACTACCCTGGACATAGAATT
TAA

mRNA sequence

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Protein sequence

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MEKLSNMGSVAKKKLKICRAKLDEKVQKASAKTAEERKIAEERRKAAEAEAKRELHEAKARHAAQKLRTRQSHVVGHRLHHQPPVEGGSAANVPAYPIASPEGYYPGHRI

CmoCh16G012000 (gene) of Cucurbita moschata (Rifu) v1 genome