CuGenDBv2

Gene ID	CmoCh16G012530
Organism	Cucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
Description	protein LOW PSII ACCUMULATION 3, chloroplastic
Genome location	Cmo_Chr16:8933254..8934851
RNA-Seq Expression	CmoCh16G012530
Synteny	CmoCh16G012530
Gene Ontology terms	NA
InterPro domains	IPR018962 - Domain of unknown function DUF1995 IPR044687 - Protein LOW PSII ACCUMULATION 3

Homology

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GenBank top hits

e value

%identity

Alignment

KAG6577746.1 hypothetical protein SDJN03_25320, partial [Cucurbita argyrosperma subsp. sororia]

2.0e-46

98.95

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Query:  MADRVKPEDELFLVAYPYFNVNEMLVVEELYKEAVANTARKLIIFNGELDRIRSGYYPPFFYPKLAALTKTLFPKMETVYYIHNFKGQKGGVLFR
        MADRVKPEDELFLVAYPYFNVNEMLVVEELYKEAVANT RKLIIFNGELDRIRSGYYPPFFYPKLAALTKTLFPKMETVYYIHNFKGQKGGVLFR
Subjt:  MADRVKPEDELFLVAYPYFNVNEMLVVEELYKEAVANTARKLIIFNGELDRIRSGYYPPFFYPKLAALTKTLFPKMETVYYIHNFKGQKGGVLFR

XP_022923333.1 protein LOW PSII ACCUMULATION 3, chloroplastic [Cucurbita moschata]

7.0e-47

100

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Query:  MADRVKPEDELFLVAYPYFNVNEMLVVEELYKEAVANTARKLIIFNGELDRIRSGYYPPFFYPKLAALTKTLFPKMETVYYIHNFKGQKGGVLFR
        MADRVKPEDELFLVAYPYFNVNEMLVVEELYKEAVANTARKLIIFNGELDRIRSGYYPPFFYPKLAALTKTLFPKMETVYYIHNFKGQKGGVLFR
Subjt:  MADRVKPEDELFLVAYPYFNVNEMLVVEELYKEAVANTARKLIIFNGELDRIRSGYYPPFFYPKLAALTKTLFPKMETVYYIHNFKGQKGGVLFR

XP_022965338.1 protein LOW PSII ACCUMULATION 3, chloroplastic [Cucurbita maxima]

2.0e-46

98.95

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Query:  MADRVKPEDELFLVAYPYFNVNEMLVVEELYKEAVANTARKLIIFNGELDRIRSGYYPPFFYPKLAALTKTLFPKMETVYYIHNFKGQKGGVLFR
        MADRVKPEDELFLVAYPYFNVNEMLVVEELYKEAVANT RKLIIFNGELDRIRSGYYPPFFYPKLAALTKTLFPKMETVYYIHNFKGQKGGVLFR
Subjt:  MADRVKPEDELFLVAYPYFNVNEMLVVEELYKEAVANTARKLIIFNGELDRIRSGYYPPFFYPKLAALTKTLFPKMETVYYIHNFKGQKGGVLFR

XP_023553103.1 protein LOW PSII ACCUMULATION 3, chloroplastic [Cucurbita pepo subsp. pepo]

2.0e-46

98.95

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Query:  MADRVKPEDELFLVAYPYFNVNEMLVVEELYKEAVANTARKLIIFNGELDRIRSGYYPPFFYPKLAALTKTLFPKMETVYYIHNFKGQKGGVLFR
        MADRVKPEDELFLVAYPYFNVNEMLVVEELYKEAVANT RKLIIFNGELDRIRSGYYPPFFYPKLAALTKTLFPKMETVYYIHNFKGQKGGVLFR
Subjt:  MADRVKPEDELFLVAYPYFNVNEMLVVEELYKEAVANTARKLIIFNGELDRIRSGYYPPFFYPKLAALTKTLFPKMETVYYIHNFKGQKGGVLFR

XP_038877167.1 protein LOW PSII ACCUMULATION 3, chloroplastic isoform X2 [Benincasa hispida]

3.9e-45

96.84

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Query:  MADRVKPEDELFLVAYPYFNVNEMLVVEELYKEAVANTARKLIIFNGELDRIRSGYYPPFFYPKLAALTKTLFPKMETVYYIHNFKGQKGGVLFR
        MADRVKPEDELFLVAYPYFNVNEMLVVEELYKEAV NT RKLIIFNGELDRIRSGYYPPFFYPKLAAL KTLFPKMETVYYIHNFKGQKGGVLFR
Subjt:  MADRVKPEDELFLVAYPYFNVNEMLVVEELYKEAVANTARKLIIFNGELDRIRSGYYPPFFYPKLAALTKTLFPKMETVYYIHNFKGQKGGVLFR

TrEMBL top hits

e value

%identity

Alignment

A0A1S3BK29 protein LOW PSII ACCUMULATION 3, chloroplastic isoform X1

1.9e-45

96.84

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Query:  MADRVKPEDELFLVAYPYFNVNEMLVVEELYKEAVANTARKLIIFNGELDRIRSGYYPPFFYPKLAALTKTLFPKMETVYYIHNFKGQKGGVLFR
        MADRVKPEDELFLVAYPYFNVNEMLVVEELYKEAV NT RKLIIFNGELDRIRSGYYPPFFYPKLAAL KTLFPKMETVYYIHNFKGQKGGVLFR
Subjt:  MADRVKPEDELFLVAYPYFNVNEMLVVEELYKEAVANTARKLIIFNGELDRIRSGYYPPFFYPKLAALTKTLFPKMETVYYIHNFKGQKGGVLFR

A0A1S3BKQ4 protein LOW PSII ACCUMULATION 3, chloroplastic isoform X2

1.9e-45

96.84

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Query:  MADRVKPEDELFLVAYPYFNVNEMLVVEELYKEAVANTARKLIIFNGELDRIRSGYYPPFFYPKLAALTKTLFPKMETVYYIHNFKGQKGGVLFR
        MADRVKPEDELFLVAYPYFNVNEMLVVEELYKEAV NT RKLIIFNGELDRIRSGYYPPFFYPKLAAL KTLFPKMETVYYIHNFKGQKGGVLFR
Subjt:  MADRVKPEDELFLVAYPYFNVNEMLVVEELYKEAVANTARKLIIFNGELDRIRSGYYPPFFYPKLAALTKTLFPKMETVYYIHNFKGQKGGVLFR

A0A1S4DXY8 protein LOW PSII ACCUMULATION 3, chloroplastic isoform X3

1.9e-45

96.84

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Query:  MADRVKPEDELFLVAYPYFNVNEMLVVEELYKEAVANTARKLIIFNGELDRIRSGYYPPFFYPKLAALTKTLFPKMETVYYIHNFKGQKGGVLFR
        MADRVKPEDELFLVAYPYFNVNEMLVVEELYKEAV NT RKLIIFNGELDRIRSGYYPPFFYPKLAAL KTLFPKMETVYYIHNFKGQKGGVLFR
Subjt:  MADRVKPEDELFLVAYPYFNVNEMLVVEELYKEAVANTARKLIIFNGELDRIRSGYYPPFFYPKLAALTKTLFPKMETVYYIHNFKGQKGGVLFR

A0A6J1E988 protein LOW PSII ACCUMULATION 3, chloroplastic

3.4e-47

100

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Query:  MADRVKPEDELFLVAYPYFNVNEMLVVEELYKEAVANTARKLIIFNGELDRIRSGYYPPFFYPKLAALTKTLFPKMETVYYIHNFKGQKGGVLFR
        MADRVKPEDELFLVAYPYFNVNEMLVVEELYKEAVANTARKLIIFNGELDRIRSGYYPPFFYPKLAALTKTLFPKMETVYYIHNFKGQKGGVLFR
Subjt:  MADRVKPEDELFLVAYPYFNVNEMLVVEELYKEAVANTARKLIIFNGELDRIRSGYYPPFFYPKLAALTKTLFPKMETVYYIHNFKGQKGGVLFR

A0A6J1HNL5 protein LOW PSII ACCUMULATION 3, chloroplastic

9.9e-47

98.95

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Query:  MADRVKPEDELFLVAYPYFNVNEMLVVEELYKEAVANTARKLIIFNGELDRIRSGYYPPFFYPKLAALTKTLFPKMETVYYIHNFKGQKGGVLFR
        MADRVKPEDELFLVAYPYFNVNEMLVVEELYKEAVANT RKLIIFNGELDRIRSGYYPPFFYPKLAALTKTLFPKMETVYYIHNFKGQKGGVLFR
Subjt:  MADRVKPEDELFLVAYPYFNVNEMLVVEELYKEAVANTARKLIIFNGELDRIRSGYYPPFFYPKLAALTKTLFPKMETVYYIHNFKGQKGGVLFR

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT5G48790.1 Domain of unknown function (DUF1995)

4.0e-48

95.79

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Query:  MADRVKPEDELFLVAYPYFNVNEMLVVEELYKEAVANTARKLIIFNGELDRIRSGYYPPFFYPKLAALTKTLFPKMETVYYIHNFKGQKGGVLFR
        MADRVKPEDELFLVAYPYFNVNEMLVVEELYKEAV NT RKLIIFNGELDRIRSGYYP FFYPKLAALTKTL PKMETVYYIHNFKGQKGGVLFR
Subjt:  MADRVKPEDELFLVAYPYFNVNEMLVVEELYKEAVANTARKLIIFNGELDRIRSGYYPPFFYPKLAALTKTLFPKMETVYYIHNFKGQKGGVLFR

Sequences

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CDS sequence

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ATGGCAGACCGTGTGAAACCAGAAGATGAACTTTTTCTGGTTGCATATCCATATTTCAATGTCAATGAAATGCTTGTGGTTGAAGAGCTTTACAAGGAAGCTGTCGCAAA
CACTGCACGAAAGCTCATAATCTTTAATGGAGAGCTCGACCGCATTAGATCCGGCTATTATCCGCCATTTTTCTACCCGAAGCTGGCGGCACTTACGAAGACTCTCTTCC
CCAAGATGGAGACTGTATATTACATCCACAACTTCAAGGGACAGAAAGGAGGAGTTCTTTTCAGATGGCCGAGAATGCTCGACTTATCAATTTATCCGGTCTTATTAGTC
GATATTACCCTTCATTTTCATGCCAAGAGGATCATTTGTTTGCTAGCATCGAAGTCTTTTCTGGTAAATGCTACATCATCATAA

mRNA sequence

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Protein sequence

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MADRVKPEDELFLVAYPYFNVNEMLVVEELYKEAVANTARKLIIFNGELDRIRSGYYPPFFYPKLAALTKTLFPKMETVYYIHNFKGQKGGVLFRWPRMLDLSIYPVLLV
DITLHFHAKRIICLLASKSFLVNATSS

CmoCh16G012530 (gene) of Cucurbita moschata (Rifu) v1 genome