; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

CmoCh16G012850 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh16G012850
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
Descriptioncold shock domain-containing protein 3-like
Genome locationCmo_Chr16:9158915..9159706
RNA-Seq ExpressionCmoCh16G012850
SyntenyCmoCh16G012850
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR001878 - Zinc finger, CCHC-type
IPR002059 - Cold-shock protein, DNA-binding
IPR011129 - Cold shock domain
IPR012340 - Nucleic acid-binding, OB-fold
IPR019844 - Cold-shock (CSD) domain
IPR036875 - Zinc finger, CCHC-type superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6577777.1 Cold shock protein 1, partial [Cucurbita argyrosperma subsp. sororia]7.5e-13897.74Show/hide
Query:  MAEERLTGVVQWFNDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIAPGDDGKSKAIEVVALDGSSGNRRDNFGGGGGRGGRGGGGGGYG
        MAEERLTGVVQWFNDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIAPGDDGKSKAIEVVALDGSSGNRRDNFGGGGGRGGRGGGGGGYG
Subjt:  MAEERLTGVVQWFNDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIAPGDDGKSKAIEVVALDGSSGNRRDNFGGGGGRGGRGGGGGGYG

Query:  FGGWRGGDRRNGSSGAGGGGCYQCGEQGHLARDCTRASNRGGGGGGGGCFTCGEVGHLARDCPRGNSGGGGGGGAGGGACYNCGGFGHLARDCNRGGAGG
        FGGWRGGDRRNGSSGAGGGGCYQCGEQGHLARDCTRASNRGGGGGGGGCFTCGEVGHLARDCPRGNS   GGGGAGGGACYNCGGFGHLARDCNRGGAGG
Subjt:  FGGWRGGDRRNGSSGAGGGGCYQCGEQGHLARDCTRASNRGGGGGGGGCFTCGEVGHLARDCPRGNSGGGGGGGAGGGACYNCGGFGHLARDCNRGGAGG

Query:  GSGGGGGGCFNCGEYGHLARDCQNESRGS---GGGRFGGGGANTCFNCGKSGHFARECPDVRSETE
        GSGGGGGGCFNCGEYGHLARDCQNESRGS   GGGRFGGGGANTCFNCGKSGHFARECPDVRSETE
Subjt:  GSGGGGGGCFNCGEYGHLARDCQNESRGS---GGGRFGGGGANTCFNCGKSGHFARECPDVRSETE

KAG7028203.1 Cold shock protein 1, partial [Cucurbita argyrosperma subsp. argyrosperma]4.1e-12895.42Show/hide
Query:  MAEERLTGVVQWFNDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIAPGDDGKSKAIEVVALDGSSGNRRDNFGGGGGRGGRGGGGGGYG
        MAEERLTGVVQWFNDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIA GDDGKSKAIEVVALDGSSGNRRDNFGGGGGRGGR  GGGGYG
Subjt:  MAEERLTGVVQWFNDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIAPGDDGKSKAIEVVALDGSSGNRRDNFGGGGGRGGRGGGGGGYG

Query:  FGGWRGGDRRNGSSGAGGGGCYQCGEQGHLARDCTRASNRGGGGG-GGGCFTCGEVGHLARDCPRGNSGGGGGGGAGGGACYNCGGFGHLARDCNRGGAG
        FGGWRGGDRRNGSSGAGGGGCYQCGEQGHLARDC RASNRGGGGG GGGCFTCGEVGHLARDCPRGNS GGGGGGAGGG CYNCGGFGHLARDCNRGGAG
Subjt:  FGGWRGGDRRNGSSGAGGGGCYQCGEQGHLARDCTRASNRGGGGG-GGGCFTCGEVGHLARDCPRGNSGGGGGGGAGGGACYNCGGFGHLARDCNRGGAG

Query:  GGS-GGGGGGCFNCGEYGHLARDCQNESRGSGGGRF---GGGGANTCFNCGKSGHFARECPD
        GGS GGGGGGCFNCGEYGHLARDCQNESR SGGGRF   GGGGANTCFNCGKSGHFARECPD
Subjt:  GGS-GGGGGGCFNCGEYGHLARDCQNESRGSGGGRF---GGGGANTCFNCGKSGHFARECPD

XP_022923189.1 cold shock domain-containing protein 3-like [Cucurbita moschata]2.2e-142100Show/hide
Query:  MAEERLTGVVQWFNDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIAPGDDGKSKAIEVVALDGSSGNRRDNFGGGGGRGGRGGGGGGYG
        MAEERLTGVVQWFNDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIAPGDDGKSKAIEVVALDGSSGNRRDNFGGGGGRGGRGGGGGGYG
Subjt:  MAEERLTGVVQWFNDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIAPGDDGKSKAIEVVALDGSSGNRRDNFGGGGGRGGRGGGGGGYG

Query:  FGGWRGGDRRNGSSGAGGGGCYQCGEQGHLARDCTRASNRGGGGGGGGCFTCGEVGHLARDCPRGNSGGGGGGGAGGGACYNCGGFGHLARDCNRGGAGG
        FGGWRGGDRRNGSSGAGGGGCYQCGEQGHLARDCTRASNRGGGGGGGGCFTCGEVGHLARDCPRGNSGGGGGGGAGGGACYNCGGFGHLARDCNRGGAGG
Subjt:  FGGWRGGDRRNGSSGAGGGGCYQCGEQGHLARDCTRASNRGGGGGGGGCFTCGEVGHLARDCPRGNSGGGGGGGAGGGACYNCGGFGHLARDCNRGGAGG

Query:  GSGGGGGGCFNCGEYGHLARDCQNESRGSGGGRFGGGGANTCFNCGKSGHFARECPDVRSETE
        GSGGGGGGCFNCGEYGHLARDCQNESRGSGGGRFGGGGANTCFNCGKSGHFARECPDVRSETE
Subjt:  GSGGGGGGCFNCGEYGHLARDCQNESRGSGGGRFGGGGANTCFNCGKSGHFARECPDVRSETE

XP_022965328.1 cold shock domain-containing protein 3-like [Cucurbita maxima]2.0e-13596.99Show/hide
Query:  MAEERLTGVVQWFNDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIAPGDDGKSKAIEVVALDGSSGNRRDNFGGGGGRGGRGGGGGGYG
        MAEERLTGVVQWFNDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIAPGDDGKSKAIEVVALDGSSGNRRDNFGGGGGRGGRGGGGGGYG
Subjt:  MAEERLTGVVQWFNDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIAPGDDGKSKAIEVVALDGSSGNRRDNFGGGGGRGGRGGGGGGYG

Query:  FGGWRGGDRRNGSSGAGGGGCYQCGEQGHLARDCTRASNR-GGGGGGGGCFTCGEVGHLARDCPRGNSGGGGGGGAGGGACYNCGGFGHLARDCNRGGAG
        FGGWRGGDRRNGSSGAGGGGCYQCGEQGHLARDCTRASNR GGGGGGGGCFTCGEVGHLARDCPRGNS    GGGAGGGACYNCGGFGHLARDCNRGGAG
Subjt:  FGGWRGGDRRNGSSGAGGGGCYQCGEQGHLARDCTRASNR-GGGGGGGGCFTCGEVGHLARDCPRGNSGGGGGGGAGGGACYNCGGFGHLARDCNRGGAG

Query:  GGSGGGGGGCFNCGEYGHLARDCQNESRGS--GGGRFGGGGANTCFNCGKSGHFARECPDVRSETE
        GGSGGGGG CFNCGEYGHLARDCQNESRGS  GGGRFGGGGANTCFNCGKSGHFARECPDVRSETE
Subjt:  GGSGGGGGGCFNCGEYGHLARDCQNESRGS--GGGRFGGGGANTCFNCGKSGHFARECPDVRSETE

XP_023551806.1 cold shock domain-containing protein 3-like [Cucurbita pepo subsp. pepo]9.7e-13898.87Show/hide
Query:  MAEERLTGVVQWFNDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIAPGDDGKSKAIEVVALDGSSGNRRDNFGGGGGRGGRGGGGGGYG
        MAEERLTGVVQWFNDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIAPGDDGKSKAIEVVALDGSSGNRRDNFGGGGGRGGRGGGGGGYG
Subjt:  MAEERLTGVVQWFNDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIAPGDDGKSKAIEVVALDGSSGNRRDNFGGGGGRGGRGGGGGGYG

Query:  FGGWRGGDRRNGSSGAGGGGCYQCGEQGHLARDCTRASNRGG-GGGGGGCFTCGEVGHLARDCPRGNSGGGGGGGAGGGACYNCGGFGHLARDCNRGGAG
        FGGWRGGDRRNGSSGAGGGGCYQCGEQGHLARDCTRASNRGG GGGGGGCFTCGEVGHLARDCPRGNS GGGGGGAGGGACYNCGGFGHLARDCNRGGAG
Subjt:  FGGWRGGDRRNGSSGAGGGGCYQCGEQGHLARDCTRASNRGG-GGGGGGCFTCGEVGHLARDCPRGNSGGGGGGGAGGGACYNCGGFGHLARDCNRGGAG

Query:  GGSGGGGGGCFNCGEYGHLARDCQNESRGS-GGGRFGGGGANTCFNCGKSGHFARECPDVRSETE
        GGSGGGGGGCFNCGEYGHLARDCQNESRGS GGGRFGGGGANTCFNCGKSGHFARECPDVRSETE
Subjt:  GGSGGGGGGCFNCGEYGHLARDCQNESRGS-GGGRFGGGGANTCFNCGKSGHFARECPDVRSETE

TrEMBL top hitse value%identityAlignment
A0A5D3CJR2 Cold shock domain-containing protein 39.8e-12892.96Show/hide
Query:  MAEERLTGVVQWFNDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIAPGDDGKSKAIEVVALDGSSGNRRDNF----GGGGGRGGR-GGG
        MAEERLTGVVQWFNDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIAPGDDGKSKAIEVVALDGSSGNRRDNF    GGGGGRGGR GGG
Subjt:  MAEERLTGVVQWFNDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIAPGDDGKSKAIEVVALDGSSGNRRDNF----GGGGGRGGR-GGG

Query:  GGGYGFGGWRGGDRRNGSSGAGGGGCYQCGEQGHLARDCTRASNR--GGGGGGGGCFTCGEVGHLARDCPRGNSGGGGGGGAGGGACYNCGGFGHLARDC
        GGGYGFGGWRGGDRRNG+SG GGGGCYQCGEQGHLARDCTR SNR  GGGGGGGGCFTCGEVGHLARDCPRGNSGGGGGGG+GGGACYNCGGFGHLARDC
Subjt:  GGGYGFGGWRGGDRRNGSSGAGGGGCYQCGEQGHLARDCTRASNR--GGGGGGGGCFTCGEVGHLARDCPRGNSGGGGGGGAGGGACYNCGGFGHLARDC

Query:  NRGGAGGGS-GGGGGGCFNCGEYGHLARDCQNESRGS--GGGRF---GGGGANTCFNCGKSGHFARECPD
        NRGGAGGGS GGGGGGCFNCGEYGH+ARDCQNESRGS  GGGRF   GGGG+NTCFNCGKSGHFARECPD
Subjt:  NRGGAGGGS-GGGGGGCFNCGEYGHLARDCQNESRGS--GGGRF---GGGGANTCFNCGKSGHFARECPD

A0A6J1E5N5 cold shock domain-containing protein 3-like1.1e-142100Show/hide
Query:  MAEERLTGVVQWFNDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIAPGDDGKSKAIEVVALDGSSGNRRDNFGGGGGRGGRGGGGGGYG
        MAEERLTGVVQWFNDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIAPGDDGKSKAIEVVALDGSSGNRRDNFGGGGGRGGRGGGGGGYG
Subjt:  MAEERLTGVVQWFNDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIAPGDDGKSKAIEVVALDGSSGNRRDNFGGGGGRGGRGGGGGGYG

Query:  FGGWRGGDRRNGSSGAGGGGCYQCGEQGHLARDCTRASNRGGGGGGGGCFTCGEVGHLARDCPRGNSGGGGGGGAGGGACYNCGGFGHLARDCNRGGAGG
        FGGWRGGDRRNGSSGAGGGGCYQCGEQGHLARDCTRASNRGGGGGGGGCFTCGEVGHLARDCPRGNSGGGGGGGAGGGACYNCGGFGHLARDCNRGGAGG
Subjt:  FGGWRGGDRRNGSSGAGGGGCYQCGEQGHLARDCTRASNRGGGGGGGGCFTCGEVGHLARDCPRGNSGGGGGGGAGGGACYNCGGFGHLARDCNRGGAGG

Query:  GSGGGGGGCFNCGEYGHLARDCQNESRGSGGGRFGGGGANTCFNCGKSGHFARECPDVRSETE
        GSGGGGGGCFNCGEYGHLARDCQNESRGSGGGRFGGGGANTCFNCGKSGHFARECPDVRSETE
Subjt:  GSGGGGGGCFNCGEYGHLARDCQNESRGSGGGRFGGGGANTCFNCGKSGHFARECPDVRSETE

A0A6J1GAE9 cold shock protein 1-like5.8e-12895.04Show/hide
Query:  MAEERLTGVVQWFNDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIAPGDDGKSKAIEVVALDGSSGNRRDNFGGGGGRGGRGGGGGGYG
        M EERLTGVVQWFNDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIA GDDGKSKAIEVVALDGSSGNRRDNFGGGGGRGGR  GGGGYG
Subjt:  MAEERLTGVVQWFNDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIAPGDDGKSKAIEVVALDGSSGNRRDNFGGGGGRGGRGGGGGGYG

Query:  FGGWRGGDRRNGSSGAGGGGCYQCGEQGHLARDCTRASNRGGGGG-GGGCFTCGEVGHLARDCPRGNSGGGGGGGAGGGACYNCGGFGHLARDCNRGGAG
        FGGWRGGDRRNGSSGAGGGGCYQCGEQGHLARDC RASNRGGGGG GGGCFTCGEVGHLARDCPRGNS GGGGGGAGGG CYNCGGFGHLARDCNRGGAG
Subjt:  FGGWRGGDRRNGSSGAGGGGCYQCGEQGHLARDCTRASNRGGGGG-GGGCFTCGEVGHLARDCPRGNSGGGGGGGAGGGACYNCGGFGHLARDCNRGGAG

Query:  GGSGGGGGGCFNCGEYGHLARDCQNESRGS-GGGRF---GGGGANTCFNCGKSGHFARECPD
        GGSGGGGGGCFNCGEYGHLARDCQNESR S GGGRF   GGGGANTCFNCGKSGHFARECPD
Subjt:  GGSGGGGGGCFNCGEYGHLARDCQNESRGS-GGGRF---GGGGANTCFNCGKSGHFARECPD

A0A6J1HNK3 cold shock domain-containing protein 3-like9.8e-13696.99Show/hide
Query:  MAEERLTGVVQWFNDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIAPGDDGKSKAIEVVALDGSSGNRRDNFGGGGGRGGRGGGGGGYG
        MAEERLTGVVQWFNDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIAPGDDGKSKAIEVVALDGSSGNRRDNFGGGGGRGGRGGGGGGYG
Subjt:  MAEERLTGVVQWFNDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIAPGDDGKSKAIEVVALDGSSGNRRDNFGGGGGRGGRGGGGGGYG

Query:  FGGWRGGDRRNGSSGAGGGGCYQCGEQGHLARDCTRASNR-GGGGGGGGCFTCGEVGHLARDCPRGNSGGGGGGGAGGGACYNCGGFGHLARDCNRGGAG
        FGGWRGGDRRNGSSGAGGGGCYQCGEQGHLARDCTRASNR GGGGGGGGCFTCGEVGHLARDCPRGNS    GGGAGGGACYNCGGFGHLARDCNRGGAG
Subjt:  FGGWRGGDRRNGSSGAGGGGCYQCGEQGHLARDCTRASNR-GGGGGGGGCFTCGEVGHLARDCPRGNSGGGGGGGAGGGACYNCGGFGHLARDCNRGGAG

Query:  GGSGGGGGGCFNCGEYGHLARDCQNESRGS--GGGRFGGGGANTCFNCGKSGHFARECPDVRSETE
        GGSGGGGG CFNCGEYGHLARDCQNESRGS  GGGRFGGGGANTCFNCGKSGHFARECPDVRSETE
Subjt:  GGSGGGGGGCFNCGEYGHLARDCQNESRGS--GGGRFGGGGANTCFNCGKSGHFARECPDVRSETE

E5RDD6 Cold-shock DNA-binding family protein9.8e-12892.96Show/hide
Query:  MAEERLTGVVQWFNDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIAPGDDGKSKAIEVVALDGSSGNRRDNF----GGGGGRGGR-GGG
        MAEERLTGVVQWFNDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIAPGDDGKSKAIEVVALDGSSGNRRDNF    GGGGGRGGR GGG
Subjt:  MAEERLTGVVQWFNDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIAPGDDGKSKAIEVVALDGSSGNRRDNF----GGGGGRGGR-GGG

Query:  GGGYGFGGWRGGDRRNGSSGAGGGGCYQCGEQGHLARDCTRASNR--GGGGGGGGCFTCGEVGHLARDCPRGNSGGGGGGGAGGGACYNCGGFGHLARDC
        GGGYGFGGWRGGDRRNG+SG GGGGCYQCGEQGHLARDCTR SNR  GGGGGGGGCFTCGEVGHLARDCPRGNSGGGGGGG+GGGACYNCGGFGHLARDC
Subjt:  GGGYGFGGWRGGDRRNGSSGAGGGGCYQCGEQGHLARDCTRASNR--GGGGGGGGCFTCGEVGHLARDCPRGNSGGGGGGGAGGGACYNCGGFGHLARDC

Query:  NRGGAGGGS-GGGGGGCFNCGEYGHLARDCQNESRGS--GGGRF---GGGGANTCFNCGKSGHFARECPD
        NRGGAGGGS GGGGGGCFNCGEYGH+ARDCQNESRGS  GGGRF   GGGG+NTCFNCGKSGHFARECPD
Subjt:  NRGGAGGGS-GGGGGGCFNCGEYGHLARDCQNESRGS--GGGRF---GGGGANTCFNCGKSGHFARECPD

SwissProt top hitse value%identityAlignment
O65639 Cold shock protein 13.0e-4949.49Show/hide
Query:  RLTGVVQWFNDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIAPGDDGKSKAIEVVALDGSSGNRRDNFGGGGGRGGRGGGGGGY-----
        R TG V WFN SKG+GFI PD    +LFVHQSSI S+GYRSL VGD VEF I  G DGK+KA+ V A  G S  + +N  G G R G GGG G Y     
Subjt:  RLTGVVQWFNDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIAPGDDGKSKAIEVVALDGSSGNRRDNFGGGGGRGGRGGGGGGY-----

Query:  -------GFGGWRGGDRRNGSSGAGGGGCYQCGEQGHLARDCTRASN---RGG-GGGGGGCFTCGEVGHLARDCPRGNSGGGGGGGA---GGGACYNCGG
               G GG  GG  R      GG GCY CG+ GH ARDCT A N   RG   GG  GC+TCG+VGH+ARDC + + G G   GA   G   CY CG 
Subjt:  -------GFGGWRGGDRRNGSSGAGGGGCYQCGEQGHLARDCTRASN---RGG-GGGGGGCFTCGEVGHLARDCPRGNSGGGGGGGA---GGGACYNCGG

Query:  FGHLARDCNRGGAGGG--SGGGGGG-CFNCGEYGHLARDCQNESRGSGG-----------------GRFGGGGANTCFNCGKSGHFARECPDV
         GH ARDC +  A G   SGGGG G C++CG  GH+ARDC  + + S G                 G  GGG  N C+ CGK GHFAREC  V
Subjt:  FGHLARDCNRGGAGGG--SGGGGGG-CFNCGEYGHLARDCQNESRGSGG-----------------GRFGGGGANTCFNCGKSGHFARECPDV

P27484 Glycine-rich protein 24.8e-3948.48Show/hide
Query:  MAEE---RLTGVVQWFNDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIAPGDDGKSKAIEVVALDGSS--GNRRDNFGGGGGRGGRGGG
        MAEE   R  G V+WF+D KGFGFI PD  G DLFVHQS I+S+G+RSL  G+ VEF++  G DG++KA++V   DG++  G R    GGGGG GGRGGG
Subjt:  MAEE---RLTGVVQWFNDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIAPGDDGKSKAIEVVALDGSS--GNRRDNFGGGGGRGGRGGG

Query:  GGGYGFGGWRGGDRRNGSSGAGGGGCYQCGEQGHLARDCTRASNRGGGGGGGGCFTCGEVGHLARDCPRGNSGGGGGGGAGGGACYNCGGFGHLARDCNR
        G G G GG+ GG  R GS G GGG                     GGGGG GG                G+  GGGGGG GGG                 
Subjt:  GGGYGFGGWRGGDRRNGSSGAGGGGCYQCGEQGHLARDCTRASNRGGGGGGGGCFTCGEVGHLARDCPRGNSGGGGGGGAGGGACYNCGGFGHLARDCNR

Query:  GGAGGGSGGGGGGCFNCGEYGHLARDCQNESRGSGGGRF----GGGGANTCFNCGKSGHFAREC
        GG GGG  GGG GCF CGE GH ARDC     G GGGRF    GGGG   C+ CG+ GHFAREC
Subjt:  GGAGGGSGGGGGGCFNCGEYGHLARDCQNESRGSGGGRF----GGGGANTCFNCGKSGHFAREC

Q38896 Cold shock domain-containing protein 43.4e-3248.26Show/hide
Query:  ERLTGVVQWFNDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIAPGDDGKSKAIEVVALDGSSGNRRDNFGGGGGRGGRGGGGGGYGFGG
        +R  G V+WF+  KGFGFI P   G DLFVHQSSI+S+G+RSL   + VEF +   + G+ KAIEV   DG+    + N GGGG  GGRGG GGG G GG
Subjt:  ERLTGVVQWFNDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIAPGDDGKSKAIEVVALDGSSGNRRDNFGGGGGRGGRGGGGGGYGFGG

Query:  WRGGDRRNGSSGAGGGGCYQCGEQGHLARDCTRASNRGGGGGGGGCFTCGEVGHLARDCPRGNSGGGGGGGAGGGACYNCGGFGHLARDCNRGGAGGGSG
         RGG    GS G G GG                +  RGGGGG   CF CGE GH+AR+C   + GGGG  G GGG  Y  GG             GGG G
Subjt:  WRGGDRRNGSSGAGGGGCYQCGEQGHLARDCTRASNRGGGGGGGGCFTCGEVGHLARDCPRGNSGGGGGGGAGGGACYNCGGFGHLARDCNRGGAGGGSG

Query:  GGGGGCFNCGEYGHLARDCQNESRGSGGGR
        GGG  C++CGE GH ARDC      SGG R
Subjt:  GGGGGCFNCGEYGHLARDCQNESRGSGGGR

Q41188 Cold shock protein 23.2e-3549.78Show/hide
Query:  ERLTGVVQWFNDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIAPGDDGKSKAIEVVALDGS--SGNRRDNFGGGGGRGGRGGGGGGYGF
        ER  G V+WF+  KGFGFI PD  G DLFVHQSSI+S+G+RSL   + VEF++   ++ + KAI+V   DG+   GN      GGG  GGRG      GF
Subjt:  ERLTGVVQWFNDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIAPGDDGKSKAIEVVALDGS--SGNRRDNFGGGGGRGGRGGGGGGYGF

Query:  GGWRGGDRRNGSSGAGGGGCYQCGEQGHLARDCTRASNRGGGGGGGGCFTCGEVGHLARDCPRGNSG-GGGGGGAGGGACYNCGGFGHLARDCNRGGAGG
        GG RGG R +G    GGGG Y  G +G            GGG GG  C+ CGE GH+ARDC  G  G GGGGGG GGG  Y  GG G+       GG G 
Subjt:  GGWRGGDRRNGSSGAGGGGCYQCGEQGHLARDCTRASNRGGGGGGGGCFTCGEVGHLARDCPRGNSG-GGGGGGAGGGACYNCGGFGHLARDCNRGGAGG

Query:  GSGGGGGGCFNCGEYGHLARDCQNESR
        G GGGGG C++CGE GH ARDC +  R
Subjt:  GSGGGGGGCFNCGEYGHLARDCQNESR

Q94C69 Cold shock domain-containing protein 39.7e-5652.33Show/hide
Query:  RLTGVVQWFNDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIAPGDDGKSKAIEVVALDGSSGNRRDNF--GGGG-----GRGGR-----
        R  G V WF+D KG+GFI PD  G +LFVHQSSI SDG+RSL +G+ VE++IA G DGK+KAIEV A  G S N+++N   G GG     G  G      
Subjt:  RLTGVVQWFNDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIAPGDDGKSKAIEVVALDGSSGNRRDNF--GGGG-----GRGGR-----

Query:  GGGGGGYGFGGWRGGDRRNGSSGAGGGGCYQCGEQGHLARDCTRA--SNRGGGGGGG-GCFTCGEVGHLARDCPRGNS----GGGGGGGAGGGACYNCGG
         GG GG  FGG  GG RR+G    G G CY CG+ GH ARDC ++   N GGGGGGG  C++CGEVGHLA+DC  G+     GGGGG G+GG  CY CGG
Subjt:  GGGGGGYGFGGWRGGDRRNGSSGAGGGGCYQCGEQGHLARDCTRA--SNRGGGGGGG-GCFTCGEVGHLARDCPRGNS----GGGGGGGAGGGACYNCGG

Query:  FGHLARDCNRGGAG------------GG-------------SGGGGGG--CFNCGEYGHLARDCQNESRGSGGGRFGGGGANTCFNCGKSGHFARECPDV
         GH ARDC + G G            GG             SGGGGGG  C+ CG  GHLARDC     GS G   GGGG+N CF CGK GHFAREC  V
Subjt:  FGHLARDCNRGGAG------------GG-------------SGGGGGG--CFNCGEYGHLARDCQNESRGSGGGRFGGGGANTCFNCGKSGHFARECPDV

Arabidopsis top hitse value%identityAlignment
AT2G17870.1 cold shock domain protein 36.9e-5752.33Show/hide
Query:  RLTGVVQWFNDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIAPGDDGKSKAIEVVALDGSSGNRRDNF--GGGG-----GRGGR-----
        R  G V WF+D KG+GFI PD  G +LFVHQSSI SDG+RSL +G+ VE++IA G DGK+KAIEV A  G S N+++N   G GG     G  G      
Subjt:  RLTGVVQWFNDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIAPGDDGKSKAIEVVALDGSSGNRRDNF--GGGG-----GRGGR-----

Query:  GGGGGGYGFGGWRGGDRRNGSSGAGGGGCYQCGEQGHLARDCTRA--SNRGGGGGGG-GCFTCGEVGHLARDCPRGNS----GGGGGGGAGGGACYNCGG
         GG GG  FGG  GG RR+G    G G CY CG+ GH ARDC ++   N GGGGGGG  C++CGEVGHLA+DC  G+     GGGGG G+GG  CY CGG
Subjt:  GGGGGGYGFGGWRGGDRRNGSSGAGGGGCYQCGEQGHLARDCTRA--SNRGGGGGGG-GCFTCGEVGHLARDCPRGNS----GGGGGGGAGGGACYNCGG

Query:  FGHLARDCNRGGAG------------GG-------------SGGGGGG--CFNCGEYGHLARDCQNESRGSGGGRFGGGGANTCFNCGKSGHFARECPDV
         GH ARDC + G G            GG             SGGGGGG  C+ CG  GHLARDC     GS G   GGGG+N CF CGK GHFAREC  V
Subjt:  FGHLARDCNRGGAG------------GG-------------SGGGGGG--CFNCGEYGHLARDCQNESRGSGGGRFGGGGANTCFNCGKSGHFARECPDV

AT2G21060.1 glycine-rich protein 2B2.4e-3348.26Show/hide
Query:  ERLTGVVQWFNDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIAPGDDGKSKAIEVVALDGSSGNRRDNFGGGGGRGGRGGGGGGYGFGG
        +R  G V+WF+  KGFGFI P   G DLFVHQSSI+S+G+RSL   + VEF +   + G+ KAIEV   DG+    + N GGGG  GGRGG GGG G GG
Subjt:  ERLTGVVQWFNDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIAPGDDGKSKAIEVVALDGSSGNRRDNFGGGGGRGGRGGGGGGYGFGG

Query:  WRGGDRRNGSSGAGGGGCYQCGEQGHLARDCTRASNRGGGGGGGGCFTCGEVGHLARDCPRGNSGGGGGGGAGGGACYNCGGFGHLARDCNRGGAGGGSG
         RGG    GS G G GG                +  RGGGGG   CF CGE GH+AR+C   + GGGG  G GGG  Y  GG             GGG G
Subjt:  WRGGDRRNGSSGAGGGGCYQCGEQGHLARDCTRASNRGGGGGGGGCFTCGEVGHLARDCPRGNSGGGGGGGAGGGACYNCGGFGHLARDCNRGGAGGGSG

Query:  GGGGGCFNCGEYGHLARDCQNESRGSGGGR
        GGG  C++CGE GH ARDC      SGG R
Subjt:  GGGGGCFNCGEYGHLARDCQNESRGSGGGR

AT4G36020.1 cold shock domain protein 12.1e-5049.49Show/hide
Query:  RLTGVVQWFNDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIAPGDDGKSKAIEVVALDGSSGNRRDNFGGGGGRGGRGGGGGGY-----
        R TG V WFN SKG+GFI PD    +LFVHQSSI S+GYRSL VGD VEF I  G DGK+KA+ V A  G S  + +N  G G R G GGG G Y     
Subjt:  RLTGVVQWFNDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIAPGDDGKSKAIEVVALDGSSGNRRDNFGGGGGRGGRGGGGGGY-----

Query:  -------GFGGWRGGDRRNGSSGAGGGGCYQCGEQGHLARDCTRASN---RGG-GGGGGGCFTCGEVGHLARDCPRGNSGGGGGGGA---GGGACYNCGG
               G GG  GG  R      GG GCY CG+ GH ARDCT A N   RG   GG  GC+TCG+VGH+ARDC + + G G   GA   G   CY CG 
Subjt:  -------GFGGWRGGDRRNGSSGAGGGGCYQCGEQGHLARDCTRASN---RGG-GGGGGGCFTCGEVGHLARDCPRGNSGGGGGGGA---GGGACYNCGG

Query:  FGHLARDCNRGGAGGG--SGGGGGG-CFNCGEYGHLARDCQNESRGSGG-----------------GRFGGGGANTCFNCGKSGHFARECPDV
         GH ARDC +  A G   SGGGG G C++CG  GH+ARDC  + + S G                 G  GGG  N C+ CGK GHFAREC  V
Subjt:  FGHLARDCNRGGAGGG--SGGGGGG-CFNCGEYGHLARDCQNESRGSGG-----------------GRFGGGGANTCFNCGKSGHFARECPDV

AT4G38680.1 glycine rich protein 22.3e-3649.78Show/hide
Query:  ERLTGVVQWFNDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIAPGDDGKSKAIEVVALDGS--SGNRRDNFGGGGGRGGRGGGGGGYGF
        ER  G V+WF+  KGFGFI PD  G DLFVHQSSI+S+G+RSL   + VEF++   ++ + KAI+V   DG+   GN      GGG  GGRG      GF
Subjt:  ERLTGVVQWFNDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIAPGDDGKSKAIEVVALDGS--SGNRRDNFGGGGGRGGRGGGGGGYGF

Query:  GGWRGGDRRNGSSGAGGGGCYQCGEQGHLARDCTRASNRGGGGGGGGCFTCGEVGHLARDCPRGNSG-GGGGGGAGGGACYNCGGFGHLARDCNRGGAGG
        GG RGG R +G    GGGG Y  G +G            GGG GG  C+ CGE GH+ARDC  G  G GGGGGG GGG  Y  GG G+       GG G 
Subjt:  GGWRGGDRRNGSSGAGGGGCYQCGEQGHLARDCTRASNRGGGGGGGGCFTCGEVGHLARDCPRGNSG-GGGGGGAGGGACYNCGGFGHLARDCNRGGAGG

Query:  GSGGGGGGCFNCGEYGHLARDCQNESR
        G GGGGG C++CGE GH ARDC +  R
Subjt:  GSGGGGGGCFNCGEYGHLARDCQNESR


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCGGAAGAGAGATTGACTGGAGTGGTTCAGTGGTTTAACGATTCCAAGGGGTTTGGCTTTATCAAGCCAGATGTGGAAGGCCCGGATCTGTTTGTTCATCAATCCTC
CATTAAATCCGATGGCTACCGGAGCCTTGTCGTCGGAGATCATGTTGAGTTTCAGATCGCCCCTGGTGATGATGGGAAATCGAAAGCCATTGAGGTCGTTGCGCTCGATG
GATCTTCGGGAAATCGGAGGGATAACTTTGGGGGTGGTGGTGGAAGGGGTGGCCGCGGCGGTGGCGGTGGAGGTTATGGGTTTGGTGGATGGAGGGGTGGCGATAGGCGT
AATGGGAGCAGTGGAGCCGGTGGGGGTGGGTGTTATCAATGTGGTGAGCAAGGGCATTTGGCTAGAGATTGTACTCGTGCTAGTAACCGCGGTGGTGGTGGTGGTGGTGG
TGGCTGTTTTACTTGCGGTGAAGTCGGCCACTTAGCGAGGGATTGTCCACGAGGAAACAGCGGCGGCGGCGGCGGCGGCGGTGCCGGTGGTGGGGCTTGCTACAATTGTG
GTGGTTTTGGGCATTTGGCTAGGGATTGCAATAGGGGTGGGGCTGGAGGTGGAAGTGGAGGTGGGGGTGGTGGTTGTTTTAATTGTGGAGAATATGGGCATTTAGCCAGA
GATTGCCAGAATGAAAGTCGTGGCAGCGGCGGCGGAAGATTCGGTGGCGGTGGTGCAAACACTTGCTTCAATTGTGGGAAATCTGGGCATTTTGCTAGGGAGTGTCCTGA
TGTAAGGAGTGAGACAGAGTAA
mRNA sequenceShow/hide mRNA sequence
ATGGCGGAAGAGAGATTGACTGGAGTGGTTCAGTGGTTTAACGATTCCAAGGGGTTTGGCTTTATCAAGCCAGATGTGGAAGGCCCGGATCTGTTTGTTCATCAATCCTC
CATTAAATCCGATGGCTACCGGAGCCTTGTCGTCGGAGATCATGTTGAGTTTCAGATCGCCCCTGGTGATGATGGGAAATCGAAAGCCATTGAGGTCGTTGCGCTCGATG
GATCTTCGGGAAATCGGAGGGATAACTTTGGGGGTGGTGGTGGAAGGGGTGGCCGCGGCGGTGGCGGTGGAGGTTATGGGTTTGGTGGATGGAGGGGTGGCGATAGGCGT
AATGGGAGCAGTGGAGCCGGTGGGGGTGGGTGTTATCAATGTGGTGAGCAAGGGCATTTGGCTAGAGATTGTACTCGTGCTAGTAACCGCGGTGGTGGTGGTGGTGGTGG
TGGCTGTTTTACTTGCGGTGAAGTCGGCCACTTAGCGAGGGATTGTCCACGAGGAAACAGCGGCGGCGGCGGCGGCGGCGGTGCCGGTGGTGGGGCTTGCTACAATTGTG
GTGGTTTTGGGCATTTGGCTAGGGATTGCAATAGGGGTGGGGCTGGAGGTGGAAGTGGAGGTGGGGGTGGTGGTTGTTTTAATTGTGGAGAATATGGGCATTTAGCCAGA
GATTGCCAGAATGAAAGTCGTGGCAGCGGCGGCGGAAGATTCGGTGGCGGTGGTGCAAACACTTGCTTCAATTGTGGGAAATCTGGGCATTTTGCTAGGGAGTGTCCTGA
TGTAAGGAGTGAGACAGAGTAA
Protein sequenceShow/hide protein sequence
MAEERLTGVVQWFNDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIAPGDDGKSKAIEVVALDGSSGNRRDNFGGGGGRGGRGGGGGGYGFGGWRGGDRR
NGSSGAGGGGCYQCGEQGHLARDCTRASNRGGGGGGGGCFTCGEVGHLARDCPRGNSGGGGGGGAGGGACYNCGGFGHLARDCNRGGAGGGSGGGGGGCFNCGEYGHLAR
DCQNESRGSGGGRFGGGGANTCFNCGKSGHFARECPDVRSETE