CuGenDBv2

Gene ID	CmoCh16G013270
Organism	Cucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
Description	FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages;
Genome location	Cmo_Chr16:9402996..9403971
RNA-Seq Expression	CmoCh16G013270
Synteny	CmoCh16G013270
Gene Ontology terms	GO:0048767 - root hair elongation (biological process) GO:0071816 - tail-anchored membrane protein insertion into ER membrane (biological process) GO:0005789 - endoplasmic reticulum membrane (cellular component) GO:0016021 - integral component of membrane (cellular component) GO:0043529 - GET complex (cellular component) GO:0043621 - protein self-association (molecular function)
InterPro domains	NA

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

XP_004146176.1 uncharacterized protein LOC101204142 [Cucumis sativus]

1.3e-31

90.7

Show/hide

Query:  EAEGIVEHRSSIAAPCIFLVVIAFQFLARWLEHLKKGGSNSQVEMELRKSIKQLLREASTLSQPSTFAQAAKLRRLAAAKEKELAN
        E EGIVEHRSSIAAP IF +VI FQFLA+WLEHLKK GSNSQVEMELRKSIKQLL+EASTLSQPSTFAQAAKLRRLAAAKEKELAN
Subjt:  EAEGIVEHRSSIAAPCIFLVVIAFQFLARWLEHLKKGGSNSQVEMELRKSIKQLLREASTLSQPSTFAQAAKLRRLAAAKEKELAN

XP_008448478.1 PREDICTED: uncharacterized protein LOC103490650 [Cucumis melo]

1.0e-33

92.13

Show/hide

Query:  MEAEAEGIVEHRSSIAAPCIFLVVIAFQFLARWLEHLKKGGSNSQVEMELRKSIKQLLREASTLSQPSTFAQAAKLRRLAAAKEKELAN
        ME EAEGIVEH SSIAAP IF +VI FQFLARWLEHLKKGGSNSQVE+ELRKSIKQLLREASTLSQPSTFAQAAKLRRLAAAKEKELAN
Subjt:  MEAEAEGIVEHRSSIAAPCIFLVVIAFQFLARWLEHLKKGGSNSQVEMELRKSIKQLLREASTLSQPSTFAQAAKLRRLAAAKEKELAN

XP_022923433.1 uncharacterized protein LOC111431128 [Cucurbita moschata]

9.0e-38

100

Show/hide

Query:  MEAEAEGIVEHRSSIAAPCIFLVVIAFQFLARWLEHLKKGGSNSQVEMELRKSIKQLLREASTLSQPSTFAQAAKLRRLAAAKEKELAN
        MEAEAEGIVEHRSSIAAPCIFLVVIAFQFLARWLEHLKKGGSNSQVEMELRKSIKQLLREASTLSQPSTFAQAAKLRRLAAAKEKELAN
Subjt:  MEAEAEGIVEHRSSIAAPCIFLVVIAFQFLARWLEHLKKGGSNSQVEMELRKSIKQLLREASTLSQPSTFAQAAKLRRLAAAKEKELAN

XP_023007643.1 uncharacterized protein LOC111500212 [Cucurbita maxima]

5.8e-37

98.86

Show/hide

Query:  EAEAEGIVEHRSSIAAPCIFLVVIAFQFLARWLEHLKKGGSNSQVEMELRKSIKQLLREASTLSQPSTFAQAAKLRRLAAAKEKELAN
        EAEAEGIVEHRSSIAAPCIFL+VIAFQFLARWLEHLKKGGSNSQVEMELRKSIKQLLREASTLSQPSTFAQAAKLRRLAAAKEKELAN
Subjt:  EAEAEGIVEHRSSIAAPCIFLVVIAFQFLARWLEHLKKGGSNSQVEMELRKSIKQLLREASTLSQPSTFAQAAKLRRLAAAKEKELAN

XP_023552250.1 uncharacterized protein LOC111809975 [Cucurbita pepo subsp. pepo]

1.5e-37

98.88

Show/hide

Query:  MEAEAEGIVEHRSSIAAPCIFLVVIAFQFLARWLEHLKKGGSNSQVEMELRKSIKQLLREASTLSQPSTFAQAAKLRRLAAAKEKELAN
        MEAEAEGIVEHRSS+AAPCIFLVVIAFQFLARWLEHLKKGGSNSQVEMELRKSIKQLLREASTLSQPSTFAQAAKLRRLAAAKEKELAN
Subjt:  MEAEAEGIVEHRSSIAAPCIFLVVIAFQFLARWLEHLKKGGSNSQVEMELRKSIKQLLREASTLSQPSTFAQAAKLRRLAAAKEKELAN

TrEMBL top hits

e value

%identity

Alignment

A0A0A0L4T9 Uncharacterized protein

6.1e-32

90.7

Show/hide

Query:  EAEGIVEHRSSIAAPCIFLVVIAFQFLARWLEHLKKGGSNSQVEMELRKSIKQLLREASTLSQPSTFAQAAKLRRLAAAKEKELAN
        E EGIVEHRSSIAAP IF +VI FQFLA+WLEHLKK GSNSQVEMELRKSIKQLL+EASTLSQPSTFAQAAKLRRLAAAKEKELAN
Subjt:  EAEGIVEHRSSIAAPCIFLVVIAFQFLARWLEHLKKGGSNSQVEMELRKSIKQLLREASTLSQPSTFAQAAKLRRLAAAKEKELAN

A0A1S3BKE1 uncharacterized protein LOC103490650

5.0e-34

92.13

Show/hide

Query:  MEAEAEGIVEHRSSIAAPCIFLVVIAFQFLARWLEHLKKGGSNSQVEMELRKSIKQLLREASTLSQPSTFAQAAKLRRLAAAKEKELAN
        ME EAEGIVEH SSIAAP IF +VI FQFLARWLEHLKKGGSNSQVE+ELRKSIKQLLREASTLSQPSTFAQAAKLRRLAAAKEKELAN
Subjt:  MEAEAEGIVEHRSSIAAPCIFLVVIAFQFLARWLEHLKKGGSNSQVEMELRKSIKQLLREASTLSQPSTFAQAAKLRRLAAAKEKELAN

A0A6J1CUP1 uncharacterized protein LOC111014752

1.4e-31

87.64

Show/hide

Query:  MEAEAEGIVEHRSSIAAPCIFLVVIAFQFLARWLEHLKKGGSNSQVEMELRKSIKQLLREASTLSQPSTFAQAAKLRRLAAAKEKELAN
        MEAEAEGIVEHRSS AAP IFLVVI FQFLARWLE  K+ GSN+ VEMELRKSIKQLL+EAS LSQPSTFAQAAKLRRLAAAKEKELAN
Subjt:  MEAEAEGIVEHRSSIAAPCIFLVVIAFQFLARWLEHLKKGGSNSQVEMELRKSIKQLLREASTLSQPSTFAQAAKLRRLAAAKEKELAN

A0A6J1E9M6 uncharacterized protein LOC111431128

4.4e-38

100

Show/hide

Query:  MEAEAEGIVEHRSSIAAPCIFLVVIAFQFLARWLEHLKKGGSNSQVEMELRKSIKQLLREASTLSQPSTFAQAAKLRRLAAAKEKELAN
        MEAEAEGIVEHRSSIAAPCIFLVVIAFQFLARWLEHLKKGGSNSQVEMELRKSIKQLLREASTLSQPSTFAQAAKLRRLAAAKEKELAN
Subjt:  MEAEAEGIVEHRSSIAAPCIFLVVIAFQFLARWLEHLKKGGSNSQVEMELRKSIKQLLREASTLSQPSTFAQAAKLRRLAAAKEKELAN

A0A6J1L884 uncharacterized protein LOC111500212

2.8e-37

98.86

Show/hide

Query:  EAEAEGIVEHRSSIAAPCIFLVVIAFQFLARWLEHLKKGGSNSQVEMELRKSIKQLLREASTLSQPSTFAQAAKLRRLAAAKEKELAN
        EAEAEGIVEHRSSIAAPCIFL+VIAFQFLARWLEHLKKGGSNSQVEMELRKSIKQLLREASTLSQPSTFAQAAKLRRLAAAKEKELAN
Subjt:  EAEAEGIVEHRSSIAAPCIFLVVIAFQFLARWLEHLKKGGSNSQVEMELRKSIKQLLREASTLSQPSTFAQAAKLRRLAAAKEKELAN

SwissProt top hits

e value

%identity

Alignment

Q1H5D2 Protein GET1

2.1e-21

64.71

Show/hide

Query:  EAEGIVEHRSSIAAPCIFLVVIAFQFLARWLEHLKKGGSNSQVEMELRKSIKQLLREASTLSQPSTFAQAAKLRRLAAAKEKELA
        E E ++E R  +AAP  F+VV+ FQ L++WL+ LKK GS +  E ELR  IKQLLREAS LSQP+TFAQAAKLRR AA KEKELA
Subjt:  EAEGIVEHRSSIAAPCIFLVVIAFQFLARWLEHLKKGGSNSQVEMELRKSIKQLLREASTLSQPSTFAQAAKLRRLAAAKEKELA

Arabidopsis top hits

e value

%identity

Alignment

AT4G16444.1 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: CHD5-like protein (InterPro:IPR007514); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).

1.5e-22

64.71

Show/hide

Query:  EAEGIVEHRSSIAAPCIFLVVIAFQFLARWLEHLKKGGSNSQVEMELRKSIKQLLREASTLSQPSTFAQAAKLRRLAAAKEKELA
        E E ++E R  +AAP  F+VV+ FQ L++WL+ LKK GS +  E ELR  IKQLLREAS LSQP+TFAQAAKLRR AA KEKELA
Subjt:  EAEGIVEHRSSIAAPCIFLVVIAFQFLARWLEHLKKGGSNSQVEMELRKSIKQLLREASTLSQPSTFAQAAKLRRLAAAKEKELA

Sequences

Show/hide sequences

CDS sequence

Show/hide CDS sequence

ATGGAAGCGGAAGCGGAAGGAATCGTAGAGCATCGAAGCTCGATAGCGGCTCCATGCATTTTCTTGGTCGTTATCGCTTTTCAATTTCTCGCTAGATGGCTGGAG
CACCTGAAGAAGGGAGGTTCCAACAGCCAGGTGGAAATGGAGTTGCGCAAATCAATAAAGCAACTTCTGAGGGAGGCAAGCACCTTATCGCAACCATCTACATTT
GCACAGGCTGCAAAACTTCGGAGGTTGGCAGCCGCTAAGGAGAAGGAGCTGGCAAACTGTGAGGCTAATTAA

mRNA sequence

Show/hide mRNA sequence

CGAGTTTGGGCTGGGCCTTGGATTTGGAGACCTTCTACTGAAGTCCATTTATTCATGTTCGAAGCCCAATGATAGGCCCAACTTCTTCCTGAATAACCTCCGTCG
TATTCCAACGACCAACGGAGTTTTCTGGTTCGATTAATTTACTGTGGTCGCACAAAAATCCTCCGGAAATGGAAGCGGAAGCGGAAGGAATCGTAGAGCATCGAA
GCTCGATAGCGGCTCCATGCATTTTCTTGGTCGTTATCGCTTTTCAATTTCTCGCTAGATGGCTGGAGCACCTGAAGAAGGGAGGTTCCAACAGCCAGGTGGAAA
TGGAGTTGCGCAAATCAATAAAGCAACTTCTGAGGGAGGCAAGCACCTTATCGCAACCATCTACATTTGCACAGGCTGCAAAACTTCGGAGGTTGGCAGCCGCTA
AGGAGAAGGAGCTGGCAAACTGTGAGGCTAATTAA

Protein sequence

Show/hide protein sequence

MEAEAEGIVEHRSSIAAPCIFLVVIAFQFLARWLEHLKKGGSNSQVEMELRKSIKQLLREASTLSQPSTFAQAAKLRRLAAAKEKELANCEAN

CmoCh16G013270 (gene) of Cucurbita moschata (Rifu) v1 genome