CuGenDBv2

Gene ID	CmoCh16G013280
Organism	Cucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
Description	FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages;
Genome location	Cmo_Chr16:9405412..9407134
RNA-Seq Expression	CmoCh16G013280
Synteny	CmoCh16G013280
Gene Ontology terms	GO:0048767 - root hair elongation (biological process) GO:0071816 - tail-anchored membrane protein insertion into ER membrane (biological process) GO:0005789 - endoplasmic reticulum membrane (cellular component) GO:0016021 - integral component of membrane (cellular component) GO:0043529 - GET complex (cellular component) GO:0043621 - protein self-association (molecular function)
InterPro domains	NA

Homology

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GenBank top hits

e value

%identity

Alignment

XP_008448478.1 PREDICTED: uncharacterized protein LOC103490650 [Cucumis melo]

2.9e-21

76.39

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Query:  QESRNKEIKTSYGLYSRVLLISKVFMYIALIFWFWRVSVATVPHHLVQPFGRVLSWKAGGWNYTLVDTVDTG
        QESRNKEIKTSYGLYS+VLLISKV +YI L+ WFWR SVATVPHHLVQPFG+ LSWKAGG   T+ D V  G
Subjt:  QESRNKEIKTSYGLYSRVLLISKVFMYIALIFWFWRVSVATVPHHLVQPFGRVLSWKAGGWNYTLVDTVDTG

XP_022923433.1 uncharacterized protein LOC111431128 [Cucurbita moschata]

1.9e-25

100

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Query:  QESRNKEIKTSYGLYSRVLLISKVFMYIALIFWFWRVSVATVPHHLVQPFGRVLSWKAGG
        QESRNKEIKTSYGLYSRVLLISKVFMYIALIFWFWRVSVATVPHHLVQPFGRVLSWKAGG
Subjt:  QESRNKEIKTSYGLYSRVLLISKVFMYIALIFWFWRVSVATVPHHLVQPFGRVLSWKAGG

XP_023007643.1 uncharacterized protein LOC111500212 [Cucurbita maxima]

7.3e-25

96.67

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Query:  QESRNKEIKTSYGLYSRVLLISKVFMYIALIFWFWRVSVATVPHHLVQPFGRVLSWKAGG
        QESRNKEIKTSYGLYSRVLLISKVFMYI L+FWFWRVSVATVPHHLVQPFGRVLSWKAGG
Subjt:  QESRNKEIKTSYGLYSRVLLISKVFMYIALIFWFWRVSVATVPHHLVQPFGRVLSWKAGG

XP_023539852.1 uncharacterized protein LOC111800404 [Cucurbita pepo subsp. pepo]

1.1e-20

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Query:  QESRNKEIKTSYGLYSRVLLISKVFMYIALIFWFWRVSVATVPHHLVQPFGRVLSWKAGGWNYTLVDTVDTG
        QESR+KEIK+SYGLYSRVLLISKV +YI L+ WFWR SVATVPHHLVQPFGR LSW+AGG   T+ D V  G
Subjt:  QESRNKEIKTSYGLYSRVLLISKVFMYIALIFWFWRVSVATVPHHLVQPFGRVLSWKAGGWNYTLVDTVDTG

XP_023552250.1 uncharacterized protein LOC111809975 [Cucurbita pepo subsp. pepo]

2.5e-25

98.33

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Query:  QESRNKEIKTSYGLYSRVLLISKVFMYIALIFWFWRVSVATVPHHLVQPFGRVLSWKAGG
        QESRNKEIKTSYGLYSRVLLISKVFMYIAL+FWFWRVSVATVPHHLVQPFGRVLSWKAGG
Subjt:  QESRNKEIKTSYGLYSRVLLISKVFMYIALIFWFWRVSVATVPHHLVQPFGRVLSWKAGG

TrEMBL top hits

e value

%identity

Alignment

A0A0A0L4T9 Uncharacterized protein

1.5e-20

72.22

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Query:  QESRNKEIKTSYGLYSRVLLISKVFMYIALIFWFWRVSVATVPHHLVQPFGRVLSWKAGGWNYTLVDTVDTG
        QESRNKEIKTSYGLYS+VLL+SKV ++I L+ WFWR SVATVPHHLVQPFG+ LSW+AGG   T+ D V  G
Subjt:  QESRNKEIKTSYGLYSRVLLISKVFMYIALIFWFWRVSVATVPHHLVQPFGRVLSWKAGGWNYTLVDTVDTG

A0A1S3BKE1 uncharacterized protein LOC103490650

1.4e-21

76.39

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Query:  QESRNKEIKTSYGLYSRVLLISKVFMYIALIFWFWRVSVATVPHHLVQPFGRVLSWKAGGWNYTLVDTVDTG
        QESRNKEIKTSYGLYS+VLLISKV +YI L+ WFWR SVATVPHHLVQPFG+ LSWKAGG   T+ D V  G
Subjt:  QESRNKEIKTSYGLYSRVLLISKVFMYIALIFWFWRVSVATVPHHLVQPFGRVLSWKAGGWNYTLVDTVDTG

A0A6J1CUP1 uncharacterized protein LOC111014752

1.5e-20

72.22

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Query:  QESRNKEIKTSYGLYSRVLLISKVFMYIALIFWFWRVSVATVPHHLVQPFGRVLSWKAGGWNYTLVDTVDTG
        QESR+KE+KTSYGLYS+VLL SKV +YIAL+ WFWR SVATVPHHLVQPFG++LSW+AGG   T+ D V  G
Subjt:  QESRNKEIKTSYGLYSRVLLISKVFMYIALIFWFWRVSVATVPHHLVQPFGRVLSWKAGGWNYTLVDTVDTG

A0A6J1E9M6 uncharacterized protein LOC111431128

9.4e-26

100

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Query:  QESRNKEIKTSYGLYSRVLLISKVFMYIALIFWFWRVSVATVPHHLVQPFGRVLSWKAGG
        QESRNKEIKTSYGLYSRVLLISKVFMYIALIFWFWRVSVATVPHHLVQPFGRVLSWKAGG
Subjt:  QESRNKEIKTSYGLYSRVLLISKVFMYIALIFWFWRVSVATVPHHLVQPFGRVLSWKAGG

A0A6J1L884 uncharacterized protein LOC111500212

3.6e-25

96.67

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Query:  QESRNKEIKTSYGLYSRVLLISKVFMYIALIFWFWRVSVATVPHHLVQPFGRVLSWKAGG
        QESRNKEIKTSYGLYSRVLLISKVFMYI L+FWFWRVSVATVPHHLVQPFGRVLSWKAGG
Subjt:  QESRNKEIKTSYGLYSRVLLISKVFMYIALIFWFWRVSVATVPHHLVQPFGRVLSWKAGG

SwissProt top hits

e value

%identity

Alignment

Q1H5D2 Protein GET1

1.4e-10

50.85

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Query:  ESRNKEIKTSYGLYSRVLLISKVFMYIALIFWFWRVSVATVPHHLVQPFGRVLSWKAGG
        E  +KEIK SY +Y + LL SKV +Y+ L+  FWR  +A +   LVQPFG +LSW  GG
Subjt:  ESRNKEIKTSYGLYSRVLLISKVFMYIALIFWFWRVSVATVPHHLVQPFGRVLSWKAGG

Arabidopsis top hits

e value

%identity

Alignment

AT4G16444.1 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: CHD5-like protein (InterPro:IPR007514); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).

9.9e-12

50.85

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Query:  ESRNKEIKTSYGLYSRVLLISKVFMYIALIFWFWRVSVATVPHHLVQPFGRVLSWKAGG
        E  +KEIK SY +Y + LL SKV +Y+ L+  FWR  +A +   LVQPFG +LSW  GG
Subjt:  ESRNKEIKTSYGLYSRVLLISKVFMYIALIFWFWRVSVATVPHHLVQPFGRVLSWKAGG

Sequences

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CDS sequence

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mRNA sequence

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ATGACATTGCTGCCAGATCAAGAATCACGTAATAAGGAGATAAAGACATCCTATGGTTTATACAGTCGAGTACTGTTGATATCAAAGGTTTTTATGTATATTGCGCTGAT
CTTCTGGTTTTGGAGAGTTTCTGTTGCAACTGTACCTCATCACCTTGTGCAGCCATTCGGAAGAGTTTTATCTTGGAAGGCTGGAGGTTGGAATTATACCTTGGTTGATA
CTGTCGACACGGGTTAGCAAATTTGTATGTCAGGTTGTCCGCTGAAAAGGTGATTGAAGATAAATGTGATGTAGAATGAATGATACATCACCGTATGCTATGTGTGACGG
TCATATGCTATGGGTGACGGTCATGTTTGAAAAGGCGACGATTGTGACACTGTGTAAAATGTTGGGCAACCCATCTTTTCCTAAATTTCAATTAGGAGAGGCTGGACAAG
TTTTTCAGCCCCACCACTTTTTCTTCTTATATTCATTCAAATGAGGTGCAGCATTGTTGCTATTTTCCTTTTCAATAATATTCTTATTCTTTTTTTTTTTTTTTTTAAAT
TATAATATTATTATTGGTATATCACAAGTATTTCAAAATTATTATAGAAATTATTTGATAATTGTGGACATGTATTAGGATCTGGAATAGTGTCTATGTTTCTATATTTT
TA

Protein sequence

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MTLLPDQESRNKEIKTSYGLYSRVLLISKVFMYIALIFWFWRVSVATVPHHLVQPFGRVLSWKAGGWNYTLVDTVDTG

CmoCh16G013280 (gene) of Cucurbita moschata (Rifu) v1 genome