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CmoCh16G013350 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh16G013350
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
DescriptionDNA mismatch repair protein MLH3 isoform X1
Genome locationCmo_Chr16:9428897..9433666
RNA-Seq ExpressionCmoCh16G013350
SyntenyCmoCh16G013350
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6577819.1 DNA mismatch repair protein MLH3, partial [Cucurbita argyrosperma subsp. sororia]4.3e-3094.37Show/hide
Query:  AFTTISYVSVVEIITKACGRANGYCKVMKGCKCLCLGIDDDMEDVGTTGNSFIIPQLHYIVKIAYHALRPC
        AF +IS VSVVEIITKACGRANGY KVMKGCKCLCLGIDDDMEDVGTTGNSFIIPQLHYIVKIAYHALRPC
Subjt:  AFTTISYVSVVEIITKACGRANGYCKVMKGCKCLCLGIDDDMEDVGTTGNSFIIPQLHYIVKIAYHALRPC

KAG6596281.1 DNA mismatch repair protein MLH3, partial [Cucurbita argyrosperma subsp. sororia]3.0e-1544.52Show/hide
Query:  MGILKPLPRCVRSSVRASVIPYGVRRAC-LVQQTSLDVTP---MIF-------------------------------AKIYELFQRMEMVQERAESAMAF
        MGI+KPLP+ VRSSVRA VI Y   +    +   SLD       IF                               +K ++L       +       A 
Subjt:  MGILKPLPRCVRSSVRASVIPYGVRRAC-LVQQTSLDVTP---MIF-------------------------------AKIYELFQRMEMVQERAESAMAF

Query:  TTISYVSVVEIITKACGRANGYCKVMKGCKCLCLGIDDDMEDVGTT
         +IS VS+VEIITKACGRANGY KVMKGCKCL LGIDDDMEDVGTT
Subjt:  TTISYVSVVEIITKACGRANGYCKVMKGCKCLCLGIDDDMEDVGTT

KAG7015858.1 DNA mismatch repair protein MLH3, partial [Cucurbita argyrosperma subsp. argyrosperma]2.1e-3256.21Show/hide
Query:  LRTVGKCGGSAISMGILKPLPRCVRSSVRASVIPYGVRRACLVQQTSLDVTPMIFAKIYELFQRMEMVQERAES------AMAFTTISYVSVVEIITKAC
        LRTVGKCGGSAIS    K +   + +++ A      V+   L ++T +  +       +++          A+         AF +IS VSVVEIITKAC
Subjt:  LRTVGKCGGSAISMGILKPLPRCVRSSVRASVIPYGVRRACLVQQTSLDVTPMIFAKIYELFQRMEMVQERAES------AMAFTTISYVSVVEIITKAC

Query:  GRANGYCKVMKGCKCLCLGIDDDMEDVGTTGNSFIIPQLHYIVKIAYHALRPC
        GRANGY KVMKGCKCLCLGIDDDMEDVGTTGNSFIIPQLHYIVKIAYHALRPC
Subjt:  GRANGYCKVMKGCKCLCLGIDDDMEDVGTTGNSFIIPQLHYIVKIAYHALRPC

KAG7027832.1 DNA mismatch repair protein MLH3, partial [Cucurbita argyrosperma subsp. argyrosperma]1.0e-1544.9Show/hide
Query:  SMGILKPLPRCVRSSVRASVIPYGVRRAC-LVQQTSLDVTP---MIF-------------------------------AKIYELFQRMEMVQERAESAMA
        SMGI+KPLP+ VRSSVRA VI Y   +    +   SLD       IF                               +K ++L       +       A
Subjt:  SMGILKPLPRCVRSSVRASVIPYGVRRAC-LVQQTSLDVTP---MIF-------------------------------AKIYELFQRMEMVQERAESAMA

Query:  FTTISYVSVVEIITKACGRANGYCKVMKGCKCLCLGIDDDMEDVGTT
          +IS VS+VEIITKACGRANGY KVMKGCKCL LGIDDDMEDVGTT
Subjt:  FTTISYVSVVEIITKACGRANGYCKVMKGCKCLCLGIDDDMEDVGTT

XP_022158269.1 DNA mismatch repair protein MLH3 isoform X1 [Momordica charantia]3.0e-1546.97Show/hide
Query:  MGILKPLPRCVRSSVRASVIPYGVRRAC-LVQQTSLDV----------TPMIFAKIYE-----LFQRMEMVQERAESAMAF-----TTISYVSVVEIITK
        MGI+KPLP  VRSSVR  +I   V R    +   SLD           T   + K+ +         + ++ ER      F      +IS VS+VEIITK
Subjt:  MGILKPLPRCVRSSVRASVIPYGVRRAC-LVQQTSLDV----------TPMIFAKIYE-----LFQRMEMVQERAESAMAF-----TTISYVSVVEIITK

Query:  ACGRANGYCKVMKGCKCLCLGIDDDMEDVGTT
         CGRANGY KVMKGCKCL LG+DDDMEDVGTT
Subjt:  ACGRANGYCKVMKGCKCLCLGIDDDMEDVGTT

TrEMBL top hitse value%identityAlignment
A0A6J1DYW9 DNA mismatch repair protein MLH3 isoform X11.5e-1546.97Show/hide
Query:  MGILKPLPRCVRSSVRASVIPYGVRRAC-LVQQTSLDV----------TPMIFAKIYE-----LFQRMEMVQERAESAMAF-----TTISYVSVVEIITK
        MGI+KPLP  VRSSVR  +I   V R    +   SLD           T   + K+ +         + ++ ER      F      +IS VS+VEIITK
Subjt:  MGILKPLPRCVRSSVRASVIPYGVRRAC-LVQQTSLDV----------TPMIFAKIYE-----LFQRMEMVQERAESAMAF-----TTISYVSVVEIITK

Query:  ACGRANGYCKVMKGCKCLCLGIDDDMEDVGTT
         CGRANGY KVMKGCKCL LG+DDDMEDVGTT
Subjt:  ACGRANGYCKVMKGCKCLCLGIDDDMEDVGTT

A0A6J1FI48 DNA mismatch repair protein MLH3 isoform X11.2e-1443.15Show/hide
Query:  MGILKPLPRCVRSSVRASVIPYGVRRAC-LVQQTSLDVTP---MIFAKIYELFQR------------MEMVQERAESAM-------------------AF
        MGI+KPLP+ VRSSVRA VI Y   +    +   SLD       IF  I   + +            + ++ ER  ++                    A 
Subjt:  MGILKPLPRCVRSSVRASVIPYGVRRAC-LVQQTSLDVTP---MIFAKIYELFQR------------MEMVQERAESAM-------------------AF

Query:  TTISYVSVVEIITKACGRANGYCKVMKGCKCLCLGIDDDMEDVGTT
         +IS VS++EIITKACGRANGY KV+KGCKCL LGIDDDMED+GTT
Subjt:  TTISYVSVVEIITKACGRANGYCKVMKGCKCLCLGIDDDMEDVGTT

A0A6J1FIL6 DNA mismatch repair protein MLH3 isoform X21.2e-1443.15Show/hide
Query:  MGILKPLPRCVRSSVRASVIPYGVRRAC-LVQQTSLDVTP---MIFAKIYELFQR------------MEMVQERAESAM-------------------AF
        MGI+KPLP+ VRSSVRA VI Y   +    +   SLD       IF  I   + +            + ++ ER  ++                    A 
Subjt:  MGILKPLPRCVRSSVRASVIPYGVRRAC-LVQQTSLDVTP---MIFAKIYELFQR------------MEMVQERAESAM-------------------AF

Query:  TTISYVSVVEIITKACGRANGYCKVMKGCKCLCLGIDDDMEDVGTT
         +IS VS++EIITKACGRANGY KV+KGCKCL LGIDDDMED+GTT
Subjt:  TTISYVSVVEIITKACGRANGYCKVMKGCKCLCLGIDDDMEDVGTT

A0A6J1I371 DNA mismatch repair protein MLH3 isoform X29.5e-1543.84Show/hide
Query:  MGILKPLPRCVRSSVRASVIPYGVRRAC-LVQQTSLDVTP---MIFAKIYELFQR------------MEMVQERAESAM-------------------AF
        MG++KPLP+ VRSSVRA VI Y   +    +   SLD       IF  I   + +            + ++ ER  ++                    A 
Subjt:  MGILKPLPRCVRSSVRASVIPYGVRRAC-LVQQTSLDVTP---MIFAKIYELFQR------------MEMVQERAESAM-------------------AF

Query:  TTISYVSVVEIITKACGRANGYCKVMKGCKCLCLGIDDDMEDVGTT
         +IS VS+VEIITKACGRANGY KV+KGCKCL LGIDDDMEDVGTT
Subjt:  TTISYVSVVEIITKACGRANGYCKVMKGCKCLCLGIDDDMEDVGTT

A0A6J1I5L5 DNA mismatch repair protein MLH3 isoform X19.5e-1543.84Show/hide
Query:  MGILKPLPRCVRSSVRASVIPYGVRRAC-LVQQTSLDVTP---MIFAKIYELFQR------------MEMVQERAESAM-------------------AF
        MG++KPLP+ VRSSVRA VI Y   +    +   SLD       IF  I   + +            + ++ ER  ++                    A 
Subjt:  MGILKPLPRCVRSSVRASVIPYGVRRAC-LVQQTSLDVTP---MIFAKIYELFQR------------MEMVQERAESAM-------------------AF

Query:  TTISYVSVVEIITKACGRANGYCKVMKGCKCLCLGIDDDMEDVGTT
         +IS VS+VEIITKACGRANGY KV+KGCKCL LGIDDDMEDVGTT
Subjt:  TTISYVSVVEIITKACGRANGYCKVMKGCKCLCLGIDDDMEDVGTT

SwissProt top hitse value%identityAlignment
F4JN26 DNA mismatch repair protein MLH32.6e-0964.58Show/hide
Query:  AFTTISYVSVVEIITKACGRANGYCKVMKGCKCLCLGIDDDMEDVGTT
        A  +IS +S++E+ TKA GR NGY KVMKG KCL LGIDDD +D GTT
Subjt:  AFTTISYVSVVEIITKACGRANGYCKVMKGCKCLCLGIDDDMEDVGTT

Arabidopsis top hitse value%identityAlignment
AT4G35520.1 MUTL protein homolog 31.8e-1064.58Show/hide
Query:  AFTTISYVSVVEIITKACGRANGYCKVMKGCKCLCLGIDDDMEDVGTT
        A  +IS +S++E+ TKA GR NGY KVMKG KCL LGIDDD +D GTT
Subjt:  AFTTISYVSVVEIITKACGRANGYCKVMKGCKCLCLGIDDDMEDVGTT


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAAAAAACAGAGCAAATACCTGATCTCTGGAACTGTAGAGGCGGGGAATTTACAAGGAAGAAGGTGTCTACGAACCGTCGGCAAATGTGGCGGTAGCGCCATCTCGAT
GGGGATTCTCAAGCCCTTACCGAGGTGTGTTCGTAGTTCTGTGCGTGCTAGTGTTATTCCCTATGGTGTCAGAAGGGCATGTTTAGTCCAACAAACCTCTTTGGATGTAA
CTCCAATGATATTTGCCAAAATTTATGAGCTTTTCCAACGAATGGAAATGGTGCAAGAAAGGGCTGAATCTGCTATGGCTTTCACGACCATCTCTTATGTATCGGTGGTG
GAGATCATAACCAAAGCATGTGGGAGGGCAAATGGATATTGTAAAGTCATGAAGGGTTGCAAATGCTTGTGTCTTGGAATTGATGATGATATGGAAGATGTTGGTACTAC
TGGTAACAGTTTCATCATCCCTCAGTTACATTATATTGTGAAAATCGCTTACCATGCTTTAAGACCTTGCTAG
mRNA sequenceShow/hide mRNA sequence
ATGAAAAAACAGAGCAAATACCTGATCTCTGGAACTGTAGAGGCGGGGAATTTACAAGGAAGAAGGTGTCTACGAACCGTCGGCAAATGTGGCGGTAGCGCCATCTCGAT
GGGGATTCTCAAGCCCTTACCGAGGTGTGTTCGTAGTTCTGTGCGTGCTAGTGTTATTCCCTATGGTGTCAGAAGGGCATGTTTAGTCCAACAAACCTCTTTGGATGTAA
CTCCAATGATATTTGCCAAAATTTATGAGCTTTTCCAACGAATGGAAATGGTGCAAGAAAGGGCTGAATCTGCTATGGCTTTCACGACCATCTCTTATGTATCGGTGGTG
GAGATCATAACCAAAGCATGTGGGAGGGCAAATGGATATTGTAAAGTCATGAAGGGTTGCAAATGCTTGTGTCTTGGAATTGATGATGATATGGAAGATGTTGGTACTAC
TGGTAACAGTTTCATCATCCCTCAGTTACATTATATTGTGAAAATCGCTTACCATGCTTTAAGACCTTGCTAGTGCTTGTATCTGCGGGGTCAGAGTCAGATTTTCATGG
GGAGGGGCAATACTTCATATTCTAACTACACACACATCATACAATCTTTTTCTTATATATACATAGTTTTTTAATCCAAGACGAACTAAGGGTATCTAATCAGCTCCTTG
GTATTTGGATATCTGGGTATGTGTGAGATCCCACATCGATTGGAGAGGGGAACGAGTGTCAGTAAGGACGCTGGGCCCCGCAGGGGGTGGATTGTGAGATCCCACGTTAG
TTGAAGAGGGAACGAAATATTCTTTATAAGGGTGTGGAAATCTCATCCTAGTAGATGCGTTTTAAAAATCTTGAGGGGAAGCTCAAAAGGGAAAGTCGAAAGAGAACAAT
AATATCTACTAGTGGTGGGCTTGGGCATGTATATATATGTATATATTTTTTGTGATAAAAACCATCTTGGATTGGTCTAGTGGCCAATGATAGTTATTGATACAATAAAG
AGCTTGGAGGGAATGGTAAAGAACAGATCAAATAAAGATCTAGCACGTAATTATTTTCTCTCGGCACCTAAATGTTGTAGGATCAGATAGGTCCCATAAGATTAGTTGAA
GCGGGGACTAGCCATCTAGAATCACAGATATTTTTCAACAAAAGAATTAGTGACTACCGTTGAAGAAATTACTTCCATCATGTAGTGTTGACTTCTTTGGTGCTAAATAG
ACCTAAG
Protein sequenceShow/hide protein sequence
MKKQSKYLISGTVEAGNLQGRRCLRTVGKCGGSAISMGILKPLPRCVRSSVRASVIPYGVRRACLVQQTSLDVTPMIFAKIYELFQRMEMVQERAESAMAFTTISYVSVV
EIITKACGRANGYCKVMKGCKCLCLGIDDDMEDVGTTGNSFIIPQLHYIVKIAYHALRPC