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CmoCh17G000080 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh17G000080
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
DescriptionUbiquitin-related modifier 1 homolog
Genome locationCmo_Chr17:48875..50859
RNA-Seq ExpressionCmoCh17G000080
SyntenyCmoCh17G000080
Gene Ontology termsGO:0002098 - tRNA wobble uridine modification (biological process)
GO:0032447 - protein urmylation (biological process)
GO:0034227 - tRNA thio-modification (biological process)
GO:0005634 - nucleus (cellular component)
GO:0005829 - cytosol (cellular component)
GO:0031386 - protein tag (molecular function)
InterPro domainsIPR012675 - Beta-grasp domain superfamily
IPR015221 - Ubiquitin-related modifier 1
IPR016155 - Molybdopterin synthase/thiamin biosynthesis sulphur carrier, beta-grasp


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6593693.1 Ubiquitin-related modifier 1-like 2, partial [Cucurbita argyrosperma subsp. sororia]1.0e-4793.94Show/hide
Query:  MQLTLEFGGGLELLCDSVKIHDVSVDPENGAGTLIMKDLLSWVRSNLIKERPEMFMKGDTVRPGVLVLVNDCDWELSGQLDTPLEEKDVVVFISTLHGG
        MQLTLEFGGGLELLCDSVKIH+VS++PENGAG L+MKDLLSWVRSNLIKERPEMFMKGDTVRPGVLVLVNDCDWELSGQLDT LEEKDVVVFISTLHGG
Subjt:  MQLTLEFGGGLELLCDSVKIHDVSVDPENGAGTLIMKDLLSWVRSNLIKERPEMFMKGDTVRPGVLVLVNDCDWELSGQLDTPLEEKDVVVFISTLHGG

XP_022145476.1 ubiquitin-related modifier 1 homolog 2 isoform X2 [Momordica charantia]7.8e-4893.94Show/hide
Query:  MQLTLEFGGGLELLCDSVKIHDVSVDPENGAGTLIMKDLLSWVRSNLIKERPEMFMKGDTVRPGVLVLVNDCDWELSGQLDTPLEEKDVVVFISTLHGG
        M LTLEFGGGLELLC+SVKIH+VS+DPENGAG LIMKDLLSWVR+NLIKERPEMFMKGDTVRPGVLVLVNDCDWELSGQLDTPLEEKDVVVFISTLHGG
Subjt:  MQLTLEFGGGLELLCDSVKIHDVSVDPENGAGTLIMKDLLSWVRSNLIKERPEMFMKGDTVRPGVLVLVNDCDWELSGQLDTPLEEKDVVVFISTLHGG

XP_022959205.1 ubiquitin-related modifier 1 homolog 2-like isoform X1 [Cucurbita moschata]9.9e-51100Show/hide
Query:  MQLTLEFGGGLELLCDSVKIHDVSVDPENGAGTLIMKDLLSWVRSNLIKERPEMFMKGDTVRPGVLVLVNDCDWELSGQLDTPLEEKDVVVFISTLHGG
        MQLTLEFGGGLELLCDSVKIHDVSVDPENGAGTLIMKDLLSWVRSNLIKERPEMFMKGDTVRPGVLVLVNDCDWELSGQLDTPLEEKDVVVFISTLHGG
Subjt:  MQLTLEFGGGLELLCDSVKIHDVSVDPENGAGTLIMKDLLSWVRSNLIKERPEMFMKGDTVRPGVLVLVNDCDWELSGQLDTPLEEKDVVVFISTLHGG

XP_022999845.1 ubiquitin-related modifier 1 homolog 2 [Cucurbita maxima]3.0e-4792.93Show/hide
Query:  MQLTLEFGGGLELLCDSVKIHDVSVDPENGAGTLIMKDLLSWVRSNLIKERPEMFMKGDTVRPGVLVLVNDCDWELSGQLDTPLEEKDVVVFISTLHGG
        MQLTLEFGGGLELLCDSVKIH+VS++PENG G L+MKDLLSWVRSNLIKERPEMFMKGDTVRPGVLVLVNDCDWELSGQLDT LEEKDVVVFISTLHGG
Subjt:  MQLTLEFGGGLELLCDSVKIHDVSVDPENGAGTLIMKDLLSWVRSNLIKERPEMFMKGDTVRPGVLVLVNDCDWELSGQLDTPLEEKDVVVFISTLHGG

XP_038876423.1 ubiquitin-related modifier 1 homolog 2 isoform X1 [Benincasa hispida]1.3e-4793.94Show/hide
Query:  MQLTLEFGGGLELLCDSVKIHDVSVDPENGAGTLIMKDLLSWVRSNLIKERPEMFMKGDTVRPGVLVLVNDCDWELSGQLDTPLEEKDVVVFISTLHGG
        MQLTLEFGGGLELLCDSVKIH+VS+DPENG G LIMKDLLSWVR+NLIKERPEMFMKGDTVRPGVLVLVNDCDWELSGQLDT LEEKDVVVFISTLHGG
Subjt:  MQLTLEFGGGLELLCDSVKIHDVSVDPENGAGTLIMKDLLSWVRSNLIKERPEMFMKGDTVRPGVLVLVNDCDWELSGQLDTPLEEKDVVVFISTLHGG

TrEMBL top hitse value%identityAlignment
A0A6J1CWE9 Ubiquitin-related modifier 1 homolog3.8e-4893.94Show/hide
Query:  MQLTLEFGGGLELLCDSVKIHDVSVDPENGAGTLIMKDLLSWVRSNLIKERPEMFMKGDTVRPGVLVLVNDCDWELSGQLDTPLEEKDVVVFISTLHGG
        M LTLEFGGGLELLC+SVKIH+VS+DPENGAG LIMKDLLSWVR+NLIKERPEMFMKGDTVRPGVLVLVNDCDWELSGQLDTPLEEKDVVVFISTLHGG
Subjt:  MQLTLEFGGGLELLCDSVKIHDVSVDPENGAGTLIMKDLLSWVRSNLIKERPEMFMKGDTVRPGVLVLVNDCDWELSGQLDTPLEEKDVVVFISTLHGG

A0A6J1H5M9 Ubiquitin-related modifier 1 homolog4.8e-51100Show/hide
Query:  MQLTLEFGGGLELLCDSVKIHDVSVDPENGAGTLIMKDLLSWVRSNLIKERPEMFMKGDTVRPGVLVLVNDCDWELSGQLDTPLEEKDVVVFISTLHGG
        MQLTLEFGGGLELLCDSVKIHDVSVDPENGAGTLIMKDLLSWVRSNLIKERPEMFMKGDTVRPGVLVLVNDCDWELSGQLDTPLEEKDVVVFISTLHGG
Subjt:  MQLTLEFGGGLELLCDSVKIHDVSVDPENGAGTLIMKDLLSWVRSNLIKERPEMFMKGDTVRPGVLVLVNDCDWELSGQLDTPLEEKDVVVFISTLHGG

A0A6J1HIP6 Ubiquitin-related modifier 1 homolog2.5e-4791.92Show/hide
Query:  MQLTLEFGGGLELLCDSVKIHDVSVDPENGAGTLIMKDLLSWVRSNLIKERPEMFMKGDTVRPGVLVLVNDCDWELSGQLDTPLEEKDVVVFISTLHGG
        MQLTLEFGGGLELLCDSVKIH++S++PENGAG L+MKDLLSWVRSNLIKERPEMFMKG+TVRPGVLVLVNDCDWELSGQLDT LEEKDVVVFISTLHGG
Subjt:  MQLTLEFGGGLELLCDSVKIHDVSVDPENGAGTLIMKDLLSWVRSNLIKERPEMFMKGDTVRPGVLVLVNDCDWELSGQLDTPLEEKDVVVFISTLHGG

A0A6J1KGQ8 Ubiquitin-related modifier 1 homolog1.4e-4792.93Show/hide
Query:  MQLTLEFGGGLELLCDSVKIHDVSVDPENGAGTLIMKDLLSWVRSNLIKERPEMFMKGDTVRPGVLVLVNDCDWELSGQLDTPLEEKDVVVFISTLHGG
        MQLTLEFGGGLELLCDSVKIH+VS++PENG G L+MKDLLSWVRSNLIKERPEMFMKGDTVRPGVLVLVNDCDWELSGQLDT LEEKDVVVFISTLHGG
Subjt:  MQLTLEFGGGLELLCDSVKIHDVSVDPENGAGTLIMKDLLSWVRSNLIKERPEMFMKGDTVRPGVLVLVNDCDWELSGQLDTPLEEKDVVVFISTLHGG

A0A6J1KZL7 Ubiquitin-related modifier 1 homolog4.8e-51100Show/hide
Query:  MQLTLEFGGGLELLCDSVKIHDVSVDPENGAGTLIMKDLLSWVRSNLIKERPEMFMKGDTVRPGVLVLVNDCDWELSGQLDTPLEEKDVVVFISTLHGG
        MQLTLEFGGGLELLCDSVKIHDVSVDPENGAGTLIMKDLLSWVRSNLIKERPEMFMKGDTVRPGVLVLVNDCDWELSGQLDTPLEEKDVVVFISTLHGG
Subjt:  MQLTLEFGGGLELLCDSVKIHDVSVDPENGAGTLIMKDLLSWVRSNLIKERPEMFMKGDTVRPGVLVLVNDCDWELSGQLDTPLEEKDVVVFISTLHGG

SwissProt top hitse value%identityAlignment
A0MDQ1 Ubiquitin-related modifier 1 homolog 12.7e-4384.16Show/hide
Query:  MQLTLEFGGGLELLCDSVKIHDVSVDPENGAGT--LIMKDLLSWVRSNLIKERPEMFMKGDTVRPGVLVLVNDCDWELSGQLDTPLEEKDVVVFISTLHG
        MQLTLEFGGGLELLCDS KIH V+VD  NGA +    MK LLSWVR+NLIKERPEMFMKGDTVRPGVLVLVNDCDWELSGQLDT +E+KDVVVFISTLHG
Subjt:  MQLTLEFGGGLELLCDSVKIHDVSVDPENGAGT--LIMKDLLSWVRSNLIKERPEMFMKGDTVRPGVLVLVNDCDWELSGQLDTPLEEKDVVVFISTLHG

Query:  G
        G
Subjt:  G

B3H7G2 Ubiquitin-related modifier 1 homolog 23.2e-4483.84Show/hide
Query:  MQLTLEFGGGLELLCDSVKIHDVSVDPENGAGTLIMKDLLSWVRSNLIKERPEMFMKGDTVRPGVLVLVNDCDWELSGQLDTPLEEKDVVVFISTLHGG
        MQ TLEFGGGLELLCDSVKIH V+++  N +  L MKDLLSWVR+NLIKERPEMFMKGDTVRPGVLVLVNDCDWELSGQLDT LE+KDV+VFISTLHGG
Subjt:  MQLTLEFGGGLELLCDSVKIHDVSVDPENGAGTLIMKDLLSWVRSNLIKERPEMFMKGDTVRPGVLVLVNDCDWELSGQLDTPLEEKDVVVFISTLHGG

B6SXH2 Ubiquitin-related modifier 1 homolog2.5e-3673.27Show/hide
Query:  MQLTLEFGGGLELLCD-SVKIHDVSV-DPENGAGTLIMKDLLSWVRSNLIKERPEMFMKGDTVRPGVLVLVNDCDWELSGQLDTPLEEKDVVVFISTLHG
        M LTLEFGGGLELL + S K+H V V  P++G G + MK LLSWV+ NLIKERPEMF+K D+VRPGVLVL+NDCDWEL G LD  LEEKDVVVFISTLHG
Subjt:  MQLTLEFGGGLELLCD-SVKIHDVSV-DPENGAGTLIMKDLLSWVRSNLIKERPEMFMKGDTVRPGVLVLVNDCDWELSGQLDTPLEEKDVVVFISTLHG

Query:  G
        G
Subjt:  G

Q0D6M1 Ubiquitin-related modifier 1 homolog9.0e-3974Show/hide
Query:  MQLTLEFGGGLELLCD-SVKIHDVSVDPENGAGTLIMKDLLSWVRSNLIKERPEMFMKGDTVRPGVLVLVNDCDWELSGQLDTPLEEKDVVVFISTLHGG
        M LTLEFGGGLELL + S K+H V + P +G G ++MK LL+WV+SNLIKERPEMF+KGD+VRPGVLVL+NDCDWEL G LD  LEEKDVVVFISTLHGG
Subjt:  MQLTLEFGGGLELLCD-SVKIHDVSVDPENGAGTLIMKDLLSWVRSNLIKERPEMFMKGDTVRPGVLVLVNDCDWELSGQLDTPLEEKDVVVFISTLHGG

Q7GBC8 Ubiquitin-related modifier 1 homolog9.0e-3974Show/hide
Query:  MQLTLEFGGGLELLCD-SVKIHDVSVDPENGAGTLIMKDLLSWVRSNLIKERPEMFMKGDTVRPGVLVLVNDCDWELSGQLDTPLEEKDVVVFISTLHGG
        M LTLEFGGGLELL + S K+H V + P +G G ++MK LL+WV+SNLIKERPEMF+KGD+VRPGVLVL+NDCDWEL G LD  LEEKDVVVFISTLHGG
Subjt:  MQLTLEFGGGLELLCD-SVKIHDVSVDPENGAGTLIMKDLLSWVRSNLIKERPEMFMKGDTVRPGVLVLVNDCDWELSGQLDTPLEEKDVVVFISTLHGG

Arabidopsis top hitse value%identityAlignment
AT2G45695.1 Ubiquitin related modifier 11.9e-4484.16Show/hide
Query:  MQLTLEFGGGLELLCDSVKIHDVSVDPENGAGT--LIMKDLLSWVRSNLIKERPEMFMKGDTVRPGVLVLVNDCDWELSGQLDTPLEEKDVVVFISTLHG
        MQLTLEFGGGLELLCDS KIH V+VD  NGA +    MK LLSWVR+NLIKERPEMFMKGDTVRPGVLVLVNDCDWELSGQLDT +E+KDVVVFISTLHG
Subjt:  MQLTLEFGGGLELLCDSVKIHDVSVDPENGAGT--LIMKDLLSWVRSNLIKERPEMFMKGDTVRPGVLVLVNDCDWELSGQLDTPLEEKDVVVFISTLHG

Query:  G
        G
Subjt:  G

AT3G61113.1 Ubiquitin related modifier 12.3e-4583.84Show/hide
Query:  MQLTLEFGGGLELLCDSVKIHDVSVDPENGAGTLIMKDLLSWVRSNLIKERPEMFMKGDTVRPGVLVLVNDCDWELSGQLDTPLEEKDVVVFISTLHGG
        MQ TLEFGGGLELLCDSVKIH V+++  N +  L MKDLLSWVR+NLIKERPEMFMKGDTVRPGVLVLVNDCDWELSGQLDT LE+KDV+VFISTLHGG
Subjt:  MQLTLEFGGGLELLCDSVKIHDVSVDPENGAGTLIMKDLLSWVRSNLIKERPEMFMKGDTVRPGVLVLVNDCDWELSGQLDTPLEEKDVVVFISTLHGG


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCAACTCACACTTGAATTTGGTGGGGGATTGGAGTTACTATGTGACTCTGTGAAGATCCACGATGTCAGCGTTGATCCTGAAAATGGAGCGGGAACGTTAATTATGAA
AGATTTGCTCTCTTGGGTCCGAAGTAATCTGATCAAGGAGAGGCCAGAAATGTTTATGAAAGGCGACACTGTAAGACCTGGTGTTCTGGTGCTTGTAAATGATTGTGATT
GGGAGCTGAGTGGGCAGCTTGATACACCATTGGAAGAGAAAGACGTGGTGGTGTTCATATCCACCCTGCATGGAGGCTAA
mRNA sequenceShow/hide mRNA sequence
TTTGGTTCAACCCGAATTGAATAGTTTGTATCATACGGTGCGTCTGAAGTTACTTCTAAAATCCCCCCATTAAGGATCTGTTCTTTGTCTTCTCTCTAGGGTTTTATTTT
AGGGTTCCGCGGAAGCAAATTGAAAATGCAACTCACACTTGAATTTGGTGGGGGATTGGAGTTACTATGTGACTCTGTGAAGATCCACGATGTCAGCGTTGATCCTGAAA
ATGGAGCGGGAACGTTAATTATGAAAGATTTGCTCTCTTGGGTCCGAAGTAATCTGATCAAGGAGAGGCCAGAAATGTTTATGAAAGGCGACACTGTAAGACCTGGTGTT
CTGGTGCTTGTAAATGATTGTGATTGGGAGCTGAGTGGGCAGCTTGATACACCATTGGAAGAGAAAGACGTGGTGGTGTTCATATCCACCCTGCATGGAGGCTAACTCAG
TAAGGAATATGGCTTTTCCAGCTTGTAGCTACGTGATTGTTGTCTAGAATATTGTGGCATTTTAACCTTAAAAATACGTATTGTTTGTTATCTTAAACTATACAAAGAAT
AATCCTGATCAGAGTTTGCTCTGAGGCTTGTGAAATCATCTTGTTGGGGTGGATGTTCATGTTCAATGACTGAATAAAGTAGAAGAAAGGCTATATTCATAGGCATTTCA
ATTCATGTTCATGTTCTGTTGTATAAGAAGTTCGAAAAGGTATTTTAAATATTTCTTTTCAACATGTCAGACACAGAAATATATTGAGACAACCATAGAA
Protein sequenceShow/hide protein sequence
MQLTLEFGGGLELLCDSVKIHDVSVDPENGAGTLIMKDLLSWVRSNLIKERPEMFMKGDTVRPGVLVLVNDCDWELSGQLDTPLEEKDVVVFISTLHGG