; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

CmoCh17G000360 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh17G000360
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
Description40S ribosomal protein S13
Genome locationCmo_Chr17:174996..177869
RNA-Seq ExpressionCmoCh17G000360
SyntenyCmoCh17G000360
Gene Ontology termsGO:0006412 - translation (biological process)
GO:0005730 - nucleolus (cellular component)
GO:0016021 - integral component of membrane (cellular component)
GO:0022627 - cytosolic small ribosomal subunit (cellular component)
GO:0003735 - structural constituent of ribosome (molecular function)
GO:0070181 - small ribosomal subunit rRNA binding (molecular function)
InterPro domainsIPR000589 - Ribosomal protein S15
IPR009068 - S15/NS1, RNA-binding
IPR012606 - Ribosomal protein S13/S15, N-terminal
IPR023029 - Ribosomal protein S15P


Homology Show/hide homology
GenBank top hitse value%identityAlignment
BAT75920.1 hypothetical protein VIGAN_01385700 [Vigna angularis var. angularis]5.2e-7296.6Show/hide
Query:  MLYSKGISASALPYKRTPPSWLKISSQDVAENICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLER
        ++ SKGIS+SALPYKRTPPSWLKISSQDV ENICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLER
Subjt:  MLYSKGISASALPYKRTPPSWLKISSQDVAENICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLER

Query:  NRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLVA
        NRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLVA
Subjt:  NRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLVA

XP_004153746.1 40S ribosomal protein S13 [Cucumis sativus]4.0e-7299.3Show/hide
Query:  KGISASALPYKRTPPSWLKISSQDVAENICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKD
        KGISASALPYKRTPPSWLKISSQDVAENICKFAKKGLTPSQIGVILRDSHGIAQVKSVTG+KILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKD
Subjt:  KGISASALPYKRTPPSWLKISSQDVAENICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKD

Query:  KDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLVA
        KDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLVA
Subjt:  KDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLVA

XP_010053902.1 40S ribosomal protein S13 [Eucalyptus grandis]6.8e-7299.3Show/hide
Query:  KGISASALPYKRTPPSWLKISSQDVAENICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKD
        KGISASALPYKRTPPSWLKISSQDV ENICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKD
Subjt:  KGISASALPYKRTPPSWLKISSQDVAENICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKD

Query:  KDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLVA
        KDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLVA
Subjt:  KDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLVA

XP_022143980.1 40S ribosomal protein S13-like [Momordica charantia]1.8e-72100Show/hide
Query:  KGISASALPYKRTPPSWLKISSQDVAENICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKD
        KGISASALPYKRTPPSWLKISSQDVAENICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKD
Subjt:  KGISASALPYKRTPPSWLKISSQDVAENICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKD

Query:  KDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLVA
        KDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLVA
Subjt:  KDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLVA

XP_038906798.1 40S ribosomal protein S13 [Benincasa hispida]4.0e-7299.3Show/hide
Query:  KGISASALPYKRTPPSWLKISSQDVAENICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKD
        KGISASALPYKRTPPSWLKIS+QDVAENICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKD
Subjt:  KGISASALPYKRTPPSWLKISSQDVAENICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKD

Query:  KDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLVA
        KDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLVA
Subjt:  KDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLVA

TrEMBL top hitse value%identityAlignment
A0A0A0KEP4 Ribosomal_S13_N domain-containing protein1.9e-7299.3Show/hide
Query:  KGISASALPYKRTPPSWLKISSQDVAENICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKD
        KGISASALPYKRTPPSWLKISSQDVAENICKFAKKGLTPSQIGVILRDSHGIAQVKSVTG+KILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKD
Subjt:  KGISASALPYKRTPPSWLKISSQDVAENICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKD

Query:  KDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLVA
        KDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLVA
Subjt:  KDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLVA

A0A1S3CBW3 40S ribosomal protein S131.9e-7299.3Show/hide
Query:  KGISASALPYKRTPPSWLKISSQDVAENICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKD
        KGISASALPYKRTPPSWLKISSQDVAENICKFAKKGLTPSQIGVILRDSHGIAQVKSVTG+KILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKD
Subjt:  KGISASALPYKRTPPSWLKISSQDVAENICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKD

Query:  KDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLVA
        KDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLVA
Subjt:  KDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLVA

A0A6J1CQC4 40S ribosomal protein S13-like8.6e-73100Show/hide
Query:  KGISASALPYKRTPPSWLKISSQDVAENICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKD
        KGISASALPYKRTPPSWLKISSQDVAENICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKD
Subjt:  KGISASALPYKRTPPSWLKISSQDVAENICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKD

Query:  KDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLVA
        KDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLVA
Subjt:  KDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLVA

A0A6J1HJL3 40S ribosomal protein S13-like8.6e-73100Show/hide
Query:  KGISASALPYKRTPPSWLKISSQDVAENICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKD
        KGISASALPYKRTPPSWLKISSQDVAENICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKD
Subjt:  KGISASALPYKRTPPSWLKISSQDVAENICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKD

Query:  KDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLVA
        KDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLVA
Subjt:  KDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLVA

A0A6J1KV63 40S ribosomal protein S13-like8.6e-73100Show/hide
Query:  KGISASALPYKRTPPSWLKISSQDVAENICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKD
        KGISASALPYKRTPPSWLKISSQDVAENICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKD
Subjt:  KGISASALPYKRTPPSWLKISSQDVAENICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKD

Query:  KDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLVA
        KDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLVA
Subjt:  KDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLVA

SwissProt top hitse value%identityAlignment
P46298 40S ribosomal protein S132.7e-7195.8Show/hide
Query:  KGISASALPYKRTPPSWLKISSQDVAENICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKD
        KGIS+SALPY+RT PSWLKISSQDV E ICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLER RKD
Subjt:  KGISASALPYKRTPPSWLKISSQDVAENICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKD

Query:  KDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLVA
        KDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLVA
Subjt:  KDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLVA

P59223 40S ribosomal protein S13-13.0e-7093.71Show/hide
Query:  KGISASALPYKRTPPSWLKISSQDVAENICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKD
        KGISASALPYKR+ PSWLK + QDV E+ICKFAKKGLTPSQIGVILRDSHGI QVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAV+IRKHLERNRKD
Subjt:  KGISASALPYKRTPPSWLKISSQDVAENICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKD

Query:  KDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLVA
        KDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLVA
Subjt:  KDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLVA

P59224 40S ribosomal protein S13-27.8e-7194.41Show/hide
Query:  KGISASALPYKRTPPSWLKISSQDVAENICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKD
        KGISASALPYKR+ PSWLK +SQDV E+ICKFAKKGLTPSQIGVILRDSHGI QVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAV+IRKHLERNRKD
Subjt:  KGISASALPYKRTPPSWLKISSQDVAENICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKD

Query:  KDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLVA
        KDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLVA
Subjt:  KDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLVA

P62302 40S ribosomal protein S137.5e-7497.9Show/hide
Query:  KGISASALPYKRTPPSWLKISSQDVAENICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKD
        KGIS+SALPYKRTPPSWLKISSQDV ENICKFAKKGLTPSQIGVILRDSHGIAQV SVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKD
Subjt:  KGISASALPYKRTPPSWLKISSQDVAENICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKD

Query:  KDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLVA
        KDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLVA
Subjt:  KDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLVA

Q69UI1 40S ribosomal protein S13-25.4e-6486.71Show/hide
Query:  KGISASALPYKRTPPSWLKISSQDVAENICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKD
        KGIS+SALPYKRTPPSWLK ++ DV E I K AKKG  PSQIGV+LRD HGI  VKSVTGSKILRILKAHGLAPEIPEDLY LIKKAV+IRKHLERNRKD
Subjt:  KGISASALPYKRTPPSWLKISSQDVAENICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKD

Query:  KDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLVA
        KDSKFRLILVESRIHRLARYYK+TKKLPP WKYESTTASTLVA
Subjt:  KDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLVA

Arabidopsis top hitse value%identityAlignment
AT3G60770.1 Ribosomal protein S13/S152.1e-7193.71Show/hide
Query:  KGISASALPYKRTPPSWLKISSQDVAENICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKD
        KGISASALPYKR+ PSWLK + QDV E+ICKFAKKGLTPSQIGVILRDSHGI QVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAV+IRKHLERNRKD
Subjt:  KGISASALPYKRTPPSWLKISSQDVAENICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKD

Query:  KDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLVA
        KDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLVA
Subjt:  KDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLVA

AT4G00100.1 ribosomal protein S13A5.5e-7294.41Show/hide
Query:  KGISASALPYKRTPPSWLKISSQDVAENICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKD
        KGISASALPYKR+ PSWLK +SQDV E+ICKFAKKGLTPSQIGVILRDSHGI QVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAV+IRKHLERNRKD
Subjt:  KGISASALPYKRTPPSWLKISSQDVAENICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKD

Query:  KDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLVA
        KDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLVA
Subjt:  KDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLVA


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTTATATAGTAAGGGTATTTCAGCTTCGGCACTGCCTTACAAAAGGACGCCGCCAAGTTGGCTGAAGATCTCTTCTCAGGATGTTGCCGAGAACATTTGCAAA
TTTGCCAAGAAGGGTTTGACACCATCTCAAATTGGTGTTATTCTCCGTGATTCTCACGGGATTGCTCAGGTCAAAAGTGTAACTGGGAGTAAGATTTTGCGCATA
TTGAAGGCTCATGGGCTAGCTCCTGAAATACCGGAGGATCTTTACCATCTCATCAAGAAAGCTGTTTCGATCAGAAAGCATTTGGAAAGGAACAGGAAAGACAAG
GATTCCAAATTCAGGTTGATTTTGGTGGAGAGCAGGATCCATCGCCTTGCCCGGTATTACAAGAAGACTAAGAAGCTCCCTCCCGTGTGGAAATATGAATCCACC
ACAGCCAGCACCCTTGTGGCTTAG
mRNA sequenceShow/hide mRNA sequence
ATGTTATATAGTAAGGGTATTTCAGCTTCGGCACTGCCTTACAAAAGGACGCCGCCAAGTTGGCTGAAGATCTCTTCTCAGGATGTTGCCGAGAACATTTGCAAA
TTTGCCAAGAAGGGTTTGACACCATCTCAAATTGGTGTTATTCTCCGTGATTCTCACGGGATTGCTCAGGTCAAAAGTGTAACTGGGAGTAAGATTTTGCGCATA
TTGAAGGCTCATGGGCTAGCTCCTGAAATACCGGAGGATCTTTACCATCTCATCAAGAAAGCTGTTTCGATCAGAAAGCATTTGGAAAGGAACAGGAAAGACAAG
GATTCCAAATTCAGGTTGATTTTGGTGGAGAGCAGGATCCATCGCCTTGCCCGGTATTACAAGAAGACTAAGAAGCTCCCTCCCGTGTGGAAATATGAATCCACC
ACAGCCAGCACCCTTGTGGCTTAGAAGCAAGCTTTTGGTGATGACTAAGAGAAAGCAAGGAGTTATTTTGGCGATTCAACTTTCCATTAAGAACCATGTTTAATA
TTTTATCAGTAACTCACTTCGGCAGTTATCCATCTTGTACCTCACTTTGGATTCATTATTGCAAATTTGATTTCTGCAATGCTTTTGTGAATGACTTTGCCTGTT
GAATGGCTCGTATGGGTGCAAGTTTTAAGTGGTTCGAATTTAGCTCAAA
Protein sequenceShow/hide protein sequence
MLYSKGISASALPYKRTPPSWLKISSQDVAENICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDK
DSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLVA