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CmoCh17G001710 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh17G001710
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
DescriptionUnknown protein
Genome locationCmo_Chr17:1002825..1003169
RNA-Seq ExpressionCmoCh17G001710
SyntenyCmoCh17G001710
Gene Ontology termsGO:0005622 - intracellular (cellular component)
InterPro domainsIPR040381 - Uncharacterized protein At4g14450-like


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6574927.1 putative protein, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia]4.3e-5899.12Show/hide
Query:  MADSHRRTSTPAGASRRHPPPQQQPGCFRSRAPASLQINRPDWKVAIPLLTPLVSPSSPKEIQTWAPNSGEGSSNSSNHKESEPEKPPVFKKWQHPAAPF
        MADSHRRTSTPAGASRRHPPPQQQP CFRSRAPASLQINRPDWKVAIPLLTPLVSPSSPKEIQTWAPNSGEGSSNSSNHKESEPEKPPVFKKWQHPAAPF
Subjt:  MADSHRRTSTPAGASRRHPPPQQQPGCFRSRAPASLQINRPDWKVAIPLLTPLVSPSSPKEIQTWAPNSGEGSSNSSNHKESEPEKPPVFKKWQHPAAPF

Query:  QYDSGPMDPRFIPA
        QYDSGPMDPRFIPA
Subjt:  QYDSGPMDPRFIPA

KAG7013496.1 putative protein, chloroplastic, partial [Cucurbita argyrosperma subsp. argyrosperma]1.8e-5697.37Show/hide
Query:  MADSHRRTSTPAGASRRHPPPQQQPGCFRSRAPASLQINRPDWKVAIPLLTPLVSPSSPKEIQTWAPNSGEGSSNSSNHKESEPEKPPVFKKWQHPAAPF
        MADSHRRTSTPAGASRRHPPP QQP CFRSRAPASLQINRPDWKVAIPLLTPLVSPSSPKEIQTWA NSGEGSSNSSNHKESEPEKPPVFKKWQHPAAPF
Subjt:  MADSHRRTSTPAGASRRHPPPQQQPGCFRSRAPASLQINRPDWKVAIPLLTPLVSPSSPKEIQTWAPNSGEGSSNSSNHKESEPEKPPVFKKWQHPAAPF

Query:  QYDSGPMDPRFIPA
        QYDSGPMDPRFIPA
Subjt:  QYDSGPMDPRFIPA

XP_022958791.1 uncharacterized protein At4g14450, chloroplastic-like [Cucurbita moschata]8.7e-59100Show/hide
Query:  MADSHRRTSTPAGASRRHPPPQQQPGCFRSRAPASLQINRPDWKVAIPLLTPLVSPSSPKEIQTWAPNSGEGSSNSSNHKESEPEKPPVFKKWQHPAAPF
        MADSHRRTSTPAGASRRHPPPQQQPGCFRSRAPASLQINRPDWKVAIPLLTPLVSPSSPKEIQTWAPNSGEGSSNSSNHKESEPEKPPVFKKWQHPAAPF
Subjt:  MADSHRRTSTPAGASRRHPPPQQQPGCFRSRAPASLQINRPDWKVAIPLLTPLVSPSSPKEIQTWAPNSGEGSSNSSNHKESEPEKPPVFKKWQHPAAPF

Query:  QYDSGPMDPRFIPA
        QYDSGPMDPRFIPA
Subjt:  QYDSGPMDPRFIPA

XP_023006762.1 uncharacterized protein At4g14450, chloroplastic-like [Cucurbita maxima]1.2e-5595.61Show/hide
Query:  MADSHRRTSTPAGASRRHPPPQQQPGCFRSRAPASLQINRPDWKVAIPLLTPLVSPSSPKEIQTWAPNSGEGSSNSSNHKESEPEKPPVFKKWQHPAAPF
        MADSHRR STPAG SR HPPPQQQPGCFRSRAPASLQINRPDWKVAIPLLTPLVSPSSPKEIQTWAPNSGEGSSNSSNHKESEPEKPPVFKKWQHPAAPF
Subjt:  MADSHRRTSTPAGASRRHPPPQQQPGCFRSRAPASLQINRPDWKVAIPLLTPLVSPSSPKEIQTWAPNSGEGSSNSSNHKESEPEKPPVFKKWQHPAAPF

Query:  QYDSGPMDPRFIPA
        QYDSGPMD RF+PA
Subjt:  QYDSGPMDPRFIPA

XP_023548297.1 uncharacterized protein At4g14450, chloroplastic-like [Cucurbita pepo subsp. pepo]1.6e-5797.37Show/hide
Query:  MADSHRRTSTPAGASRRHPPPQQQPGCFRSRAPASLQINRPDWKVAIPLLTPLVSPSSPKEIQTWAPNSGEGSSNSSNHKESEPEKPPVFKKWQHPAAPF
        M DSHRRTSTP GASRRHPPPQQQPGCFRSRAPASLQINRPDWKVAIPLLTPLVSPSSPKEIQTWAPNSGEGSSNSSNHKESEPEKPPVFKKWQHPAAPF
Subjt:  MADSHRRTSTPAGASRRHPPPQQQPGCFRSRAPASLQINRPDWKVAIPLLTPLVSPSSPKEIQTWAPNSGEGSSNSSNHKESEPEKPPVFKKWQHPAAPF

Query:  QYDSGPMDPRFIPA
        QYDSGPMDPRF+PA
Subjt:  QYDSGPMDPRFIPA

TrEMBL top hitse value%identityAlignment
A0A1S3CDB1 uncharacterized protein At4g14450, chloroplastic-like6.3e-3161.36Show/hide
Query:  MADSHRRTSTPAGASRRHPPPQQQPGCFRSRAPASLQINRPDWKVAIPLLTPLVSPSSPKEIQTWAPNSGEGSSNSS-------------------NHKE
        MADSHRRTS     + RHP   QQP   + RAPASLQINR DWKVAIPLL+PLVSPSSPK+IQ W P+S E SS SS                   +HKE
Subjt:  MADSHRRTSTPAGASRRHPPPQQQPGCFRSRAPASLQINRPDWKVAIPLLTPLVSPSSPKEIQTWAPNSGEGSSNSS-------------------NHKE

Query:  SEPEKPPVFKKWQHPAAPFQYDSGPMDPRFIP
         E EK PVFKKWQHPAAPF YDSGP  PRF+P
Subjt:  SEPEKPPVFKKWQHPAAPFQYDSGPMDPRFIP

A0A6J1ER11 uncharacterized protein At4g14450, chloroplastic-like1.7e-2864.71Show/hide
Query:  MADSHRRTSTPAGASRRHPPPQQQPGCFRSRAPASLQINRPDWKVAIPLLTPLVSPSSPKEIQTWAPNSGEGSSNSS-----NHKESEPEKPPVFKKWQH
        MA+S RR   P+G + R    +QQP   + RAPASLQI+R DWKVAIPLL+PLVSPSSP EIQ W  +SG  SS+SS     +HKESEPEKPPVFKKWQH
Subjt:  MADSHRRTSTPAGASRRHPPPQQQPGCFRSRAPASLQINRPDWKVAIPLLTPLVSPSSPKEIQTWAPNSGEGSSNSS-----NHKESEPEKPPVFKKWQH

Query:  PAAPFQYDSGPMDPR-FIP
        PAAPF YDSG   PR F+P
Subjt:  PAAPFQYDSGPMDPR-FIP

A0A6J1H320 uncharacterized protein At4g14450, chloroplastic-like4.2e-59100Show/hide
Query:  MADSHRRTSTPAGASRRHPPPQQQPGCFRSRAPASLQINRPDWKVAIPLLTPLVSPSSPKEIQTWAPNSGEGSSNSSNHKESEPEKPPVFKKWQHPAAPF
        MADSHRRTSTPAGASRRHPPPQQQPGCFRSRAPASLQINRPDWKVAIPLLTPLVSPSSPKEIQTWAPNSGEGSSNSSNHKESEPEKPPVFKKWQHPAAPF
Subjt:  MADSHRRTSTPAGASRRHPPPQQQPGCFRSRAPASLQINRPDWKVAIPLLTPLVSPSSPKEIQTWAPNSGEGSSNSSNHKESEPEKPPVFKKWQHPAAPF

Query:  QYDSGPMDPRFIPA
        QYDSGPMDPRFIPA
Subjt:  QYDSGPMDPRFIPA

A0A6J1KKB8 uncharacterized protein At4g14450, chloroplastic-like2.3e-2864.46Show/hide
Query:  MADSHRRTSTPAGASRRHPPPQQQPGCFRSRAPASLQINRPDWKVAIPLLTPLVSPSSPKEIQTWAPNSGEGSSNSS-------NHKESEPEKPPVFKKW
        MA+S RR S   GA+ R    +QQP   + RAPASLQI+R DWKVAIPLL+PLVSPSSP EIQ W  +SG  SS+SS       +HKESEPEKPPVFKKW
Subjt:  MADSHRRTSTPAGASRRHPPPQQQPGCFRSRAPASLQINRPDWKVAIPLLTPLVSPSSPKEIQTWAPNSGEGSSNSS-------NHKESEPEKPPVFKKW

Query:  QHPAAPFQYDSGPMDPR-FIP
        QHPAAPF YDSG   PR F+P
Subjt:  QHPAAPFQYDSGPMDPR-FIP

A0A6J1KWP9 uncharacterized protein At4g14450, chloroplastic-like5.7e-5695.61Show/hide
Query:  MADSHRRTSTPAGASRRHPPPQQQPGCFRSRAPASLQINRPDWKVAIPLLTPLVSPSSPKEIQTWAPNSGEGSSNSSNHKESEPEKPPVFKKWQHPAAPF
        MADSHRR STPAG SR HPPPQQQPGCFRSRAPASLQINRPDWKVAIPLLTPLVSPSSPKEIQTWAPNSGEGSSNSSNHKESEPEKPPVFKKWQHPAAPF
Subjt:  MADSHRRTSTPAGASRRHPPPQQQPGCFRSRAPASLQINRPDWKVAIPLLTPLVSPSSPKEIQTWAPNSGEGSSNSSNHKESEPEKPPVFKKWQHPAAPF

Query:  QYDSGPMDPRFIPA
        QYDSGPMD RF+PA
Subjt:  QYDSGPMDPRFIPA

SwissProt top hitse value%identityAlignment
Q6NN02 Uncharacterized protein At4g14450, chloroplastic8.0e-0735.96Show/hide
Query:  MADSHRRTSTPAGASRRHPPPQQQPGCFRSRAPASL--QINRPDWKVAIPLLTPLVSPSSPKEIQTWAPNSGEGSSNSSNHKESEPEKPPVFKKWQHPAA
        MA + +RTS+ A ++ R      Q    + RAP+ +    +  +W VAIPLL+PL    +    Q+  P      + +    E E +K PVFKKWQHPA+
Subjt:  MADSHRRTSTPAGASRRHPPPQQQPGCFRSRAPASL--QINRPDWKVAIPLLTPLVSPSSPKEIQTWAPNSGEGSSNSSNHKESEPEKPPVFKKWQHPAA

Query:  PFQYDSGPMDPRFI
        PF Y+     P FI
Subjt:  PFQYDSGPMDPRFI

Arabidopsis top hitse value%identityAlignment
AT1G04330.1 unknown protein9.4e-1146.43Show/hide
Query:  RAPASLQIN--RPDWKVAIPLLTPLVSPSS------PKEIQTWAPNSGEGSSNSSNHKESEPEKPPVFKKWQHPAAPFQYDSGP
        RAP  L+IN    +WKVAIPLL+P  SP         +E Q W                 E EKPPVFKKWQHPAAPF Y   P
Subjt:  RAPASLQIN--RPDWKVAIPLLTPLVSPSS------PKEIQTWAPNSGEGSSNSSNHKESEPEKPPVFKKWQHPAAPFQYDSGP

AT3G23170.1 unknown protein2.2e-0738.1Show/hide
Query:  STPAGASRRHPPPQQQPGCFRSRAPASLQINRPDWKVAIPLLTPLVSPSSPKEIQTWAPNSGEGSSNSSNHKESEPEKPPVFKKWQHPAAPFQYDSGPMD
        S+ +G  RR P    +        PA+   N  +W  AIPLL+PL    SP+      P   +  S +        EK PVFKKWQHPAAPF Y+S    
Subjt:  STPAGASRRHPPPQQQPGCFRSRAPASLQINRPDWKVAIPLLTPLVSPSSPKEIQTWAPNSGEGSSNSSNHKESEPEKPPVFKKWQHPAAPFQYDSGPMD

Query:  PRFIP
        P F+P
Subjt:  PRFIP

AT4G14450.1 unknown protein5.7e-0835.96Show/hide
Query:  MADSHRRTSTPAGASRRHPPPQQQPGCFRSRAPASL--QINRPDWKVAIPLLTPLVSPSSPKEIQTWAPNSGEGSSNSSNHKESEPEKPPVFKKWQHPAA
        MA + +RTS+ A ++ R      Q    + RAP+ +    +  +W VAIPLL+PL    +    Q+  P      + +    E E +K PVFKKWQHPA+
Subjt:  MADSHRRTSTPAGASRRHPPPQQQPGCFRSRAPASL--QINRPDWKVAIPLLTPLVSPSSPKEIQTWAPNSGEGSSNSSNHKESEPEKPPVFKKWQHPAA

Query:  PFQYDSGPMDPRFI
        PF Y+     P FI
Subjt:  PFQYDSGPMDPRFI


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCTGATTCACACAGACGAACCTCCACTCCCGCCGGTGCCTCTCGCCGCCATCCGCCGCCGCAGCAGCAGCCAGGCTGCTTCCGGAGCCGGGCGCCAGCGTCCCTGCA
AATCAACCGCCCCGATTGGAAGGTCGCCATCCCTCTCTTGACCCCGCTCGTCTCCCCATCCTCACCCAAAGAGATACAAACTTGGGCGCCTAATTCCGGCGAAGGATCCT
CCAATTCTTCAAATCATAAAGAATCGGAGCCGGAGAAGCCGCCGGTTTTTAAGAAATGGCAGCATCCGGCGGCCCCTTTTCAGTACGATTCCGGCCCTATGGATCCCAGA
TTCATCCCTGCTTAG
mRNA sequenceShow/hide mRNA sequence
ATGGCTGATTCACACAGACGAACCTCCACTCCCGCCGGTGCCTCTCGCCGCCATCCGCCGCCGCAGCAGCAGCCAGGCTGCTTCCGGAGCCGGGCGCCAGCGTCCCTGCA
AATCAACCGCCCCGATTGGAAGGTCGCCATCCCTCTCTTGACCCCGCTCGTCTCCCCATCCTCACCCAAAGAGATACAAACTTGGGCGCCTAATTCCGGCGAAGGATCCT
CCAATTCTTCAAATCATAAAGAATCGGAGCCGGAGAAGCCGCCGGTTTTTAAGAAATGGCAGCATCCGGCGGCCCCTTTTCAGTACGATTCCGGCCCTATGGATCCCAGA
TTCATCCCTGCTTAG
Protein sequenceShow/hide protein sequence
MADSHRRTSTPAGASRRHPPPQQQPGCFRSRAPASLQINRPDWKVAIPLLTPLVSPSSPKEIQTWAPNSGEGSSNSSNHKESEPEKPPVFKKWQHPAAPFQYDSGPMDPR
FIPA