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CmoCh17G002940 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh17G002940
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
Descriptionclassical arabinogalactan protein 25-like
Genome locationCmo_Chr17:1767314..1770980
RNA-Seq ExpressionCmoCh17G002940
SyntenyCmoCh17G002940
Gene Ontology termsGO:0016021 - integral component of membrane (cellular component)
InterPro domainsIPR039346 - Classical arabinogalactan protein 25/26


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6575045.1 hypothetical protein SDJN03_25684, partial [Cucurbita argyrosperma subsp. sororia]5.2e-5098.26Show/hide
Query:  AAVIMALMASPLLALPSLPNPKLSSSFQELSPDIAPLLPSSGGSIPSASGSIPTIPSNPSPPNPDEFEAPGPDSSALSPLGLPGSFAAPKPLPPYSNSLL
        AAVIMA MASPLLALPSLPNPKLSSSFQELSPDIAPLLPSSGGSIPSASGSIPTIPSNPSPPNPDEFEAPGPDSSALSPLGLPGSFAAPK LPPYSNSLL
Subjt:  AAVIMALMASPLLALPSLPNPKLSSSFQELSPDIAPLLPSSGGSIPSASGSIPTIPSNPSPPNPDEFEAPGPDSSALSPLGLPGSFAAPKPLPPYSNSLL

Query:  LLTALSLHAFYLHLH
        LLTALSLHAFYLHLH
Subjt:  LLTALSLHAFYLHLH

XP_008458497.1 PREDICTED: classical arabinogalactan protein 25 [Cucumis melo]2.6e-3376.92Show/hide
Query:  AAVIMALMASPLLALPSLPNPKLSSSFQELSPDIAPLLPSSGGSIPSASG-SIPTIPSNPSPPNPDEFEAPGPDSSALSPLGLPGSFAAPKPLPPYSN-S
        +AVIM  MASPLLALPS+PNPK SS FQELSP+IAPLLPS+G  IPSA+G SIPTIPSNPSPPNPD+FEA GPDSSALSP GLPGSFA P  LP YSN  
Subjt:  AAVIMALMASPLLALPSLPNPKLSSSFQELSPDIAPLLPSSGGSIPSASG-SIPTIPSNPSPPNPDEFEAPGPDSSALSPLGLPGSFAAPKPLPPYSN-S

Query:  LLLLTALSLHAFYLHLH
        LLLL  L+L AF +HLH
Subjt:  LLLLTALSLHAFYLHLH

XP_022958905.1 classical arabinogalactan protein 25-like [Cucurbita moschata]2.1e-51100Show/hide
Query:  AAVIMALMASPLLALPSLPNPKLSSSFQELSPDIAPLLPSSGGSIPSASGSIPTIPSNPSPPNPDEFEAPGPDSSALSPLGLPGSFAAPKPLPPYSNSLL
        AAVIMALMASPLLALPSLPNPKLSSSFQELSPDIAPLLPSSGGSIPSASGSIPTIPSNPSPPNPDEFEAPGPDSSALSPLGLPGSFAAPKPLPPYSNSLL
Subjt:  AAVIMALMASPLLALPSLPNPKLSSSFQELSPDIAPLLPSSGGSIPSASGSIPTIPSNPSPPNPDEFEAPGPDSSALSPLGLPGSFAAPKPLPPYSNSLL

Query:  LLTALSLHAFYLHLH
        LLTALSLHAFYLHLH
Subjt:  LLTALSLHAFYLHLH

XP_023006472.1 classical arabinogalactan protein 25-like [Cucurbita maxima]4.1e-4793.91Show/hide
Query:  AAVIMALMASPLLALPSLPNPKLSSSFQELSPDIAPLLPSSGGSIPSASGSIPTIPSNPSPPNPDEFEAPGPDSSALSPLGLPGSFAAPKPLPPYSNSLL
        AAVIMA MASPLLALPSLPNPKLS SFQELSPDIAPLLPS+GG+IPSA+GSIPTIPSNPSPPNPDEFEAPGPDSSALSP GLPGSFAAPKPLPPYSNS L
Subjt:  AAVIMALMASPLLALPSLPNPKLSSSFQELSPDIAPLLPSSGGSIPSASGSIPTIPSNPSPPNPDEFEAPGPDSSALSPLGLPGSFAAPKPLPPYSNSLL

Query:  LLTALSLHAFYLHLH
        LLTALSLHAFYLHLH
Subjt:  LLTALSLHAFYLHLH

XP_023547783.1 classical arabinogalactan protein 25-like [Cucurbita pepo subsp. pepo]1.8e-5098.26Show/hide
Query:  AAVIMALMASPLLALPSLPNPKLSSSFQELSPDIAPLLPSSGGSIPSASGSIPTIPSNPSPPNPDEFEAPGPDSSALSPLGLPGSFAAPKPLPPYSNSLL
        AAVIMA MASPLLALPSLPNPKLSSSFQELSPDIAPLLPSSGGSIPSASGSIPTIPSNPSPPNPDEFEAPGPDSSALSP GLPGSFAAPKPLPPYSNSLL
Subjt:  AAVIMALMASPLLALPSLPNPKLSSSFQELSPDIAPLLPSSGGSIPSASGSIPTIPSNPSPPNPDEFEAPGPDSSALSPLGLPGSFAAPKPLPPYSNSLL

Query:  LLTALSLHAFYLHLH
        LLTALSLHAFYLHLH
Subjt:  LLTALSLHAFYLHLH

TrEMBL top hitse value%identityAlignment
A0A0A0KBF8 Uncharacterized protein3.6e-3376.07Show/hide
Query:  AAVIMALMASPLLALPSLPNPKLSSSFQELSPDIAPLLPSSGGSIPSASG-SIPTIPSNPSPPNPDEFEAPGPDSSALSPLGLPGSFAAPKPLPPYSN-S
        +AVIM  MASPLLALPS+PNPK SS FQELSP+IAPLLPS+G  IPSA+G SIPTIPSNPSPPNPD+FEA GPDSSALSP GLPGSFA P  LP YSN  
Subjt:  AAVIMALMASPLLALPSLPNPKLSSSFQELSPDIAPLLPSSGGSIPSASG-SIPTIPSNPSPPNPDEFEAPGPDSSALSPLGLPGSFAAPKPLPPYSN-S

Query:  LLLLTALSLHAFYLHLH
        LLLL  L+L  F +HLH
Subjt:  LLLLTALSLHAFYLHLH

A0A1S3C8K2 classical arabinogalactan protein 251.2e-3376.92Show/hide
Query:  AAVIMALMASPLLALPSLPNPKLSSSFQELSPDIAPLLPSSGGSIPSASG-SIPTIPSNPSPPNPDEFEAPGPDSSALSPLGLPGSFAAPKPLPPYSN-S
        +AVIM  MASPLLALPS+PNPK SS FQELSP+IAPLLPS+G  IPSA+G SIPTIPSNPSPPNPD+FEA GPDSSALSP GLPGSFA P  LP YSN  
Subjt:  AAVIMALMASPLLALPSLPNPKLSSSFQELSPDIAPLLPSSGGSIPSASG-SIPTIPSNPSPPNPDEFEAPGPDSSALSPLGLPGSFAAPKPLPPYSN-S

Query:  LLLLTALSLHAFYLHLH
        LLLL  L+L AF +HLH
Subjt:  LLLLTALSLHAFYLHLH

A0A5A7SSC0 Classical arabinogalactan protein 251.2e-3376.92Show/hide
Query:  AAVIMALMASPLLALPSLPNPKLSSSFQELSPDIAPLLPSSGGSIPSASG-SIPTIPSNPSPPNPDEFEAPGPDSSALSPLGLPGSFAAPKPLPPYSN-S
        +AVIM  MASPLLALPS+PNPK SS FQELSP+IAPLLPS+G  IPSA+G SIPTIPSNPSPPNPD+FEA GPDSSALSP GLPGSFA P  LP YSN  
Subjt:  AAVIMALMASPLLALPSLPNPKLSSSFQELSPDIAPLLPSSGGSIPSASG-SIPTIPSNPSPPNPDEFEAPGPDSSALSPLGLPGSFAAPKPLPPYSN-S

Query:  LLLLTALSLHAFYLHLH
        LLLL  L+L AF +HLH
Subjt:  LLLLTALSLHAFYLHLH

A0A6J1H4T0 classical arabinogalactan protein 25-like1.0e-51100Show/hide
Query:  AAVIMALMASPLLALPSLPNPKLSSSFQELSPDIAPLLPSSGGSIPSASGSIPTIPSNPSPPNPDEFEAPGPDSSALSPLGLPGSFAAPKPLPPYSNSLL
        AAVIMALMASPLLALPSLPNPKLSSSFQELSPDIAPLLPSSGGSIPSASGSIPTIPSNPSPPNPDEFEAPGPDSSALSPLGLPGSFAAPKPLPPYSNSLL
Subjt:  AAVIMALMASPLLALPSLPNPKLSSSFQELSPDIAPLLPSSGGSIPSASGSIPTIPSNPSPPNPDEFEAPGPDSSALSPLGLPGSFAAPKPLPPYSNSLL

Query:  LLTALSLHAFYLHLH
        LLTALSLHAFYLHLH
Subjt:  LLTALSLHAFYLHLH

A0A6J1KVY5 classical arabinogalactan protein 25-like2.0e-4793.91Show/hide
Query:  AAVIMALMASPLLALPSLPNPKLSSSFQELSPDIAPLLPSSGGSIPSASGSIPTIPSNPSPPNPDEFEAPGPDSSALSPLGLPGSFAAPKPLPPYSNSLL
        AAVIMA MASPLLALPSLPNPKLS SFQELSPDIAPLLPS+GG+IPSA+GSIPTIPSNPSPPNPDEFEAPGPDSSALSP GLPGSFAAPKPLPPYSNS L
Subjt:  AAVIMALMASPLLALPSLPNPKLSSSFQELSPDIAPLLPSSGGSIPSASGSIPTIPSNPSPPNPDEFEAPGPDSSALSPLGLPGSFAAPKPLPPYSNSLL

Query:  LLTALSLHAFYLHLH
        LLTALSLHAFYLHLH
Subjt:  LLTALSLHAFYLHLH

SwissProt top hitse value%identityAlignment
Q6NN00 Classical arabinogalactan protein 251.5e-0747.13Show/hide
Query:  SSFQELSPDIAPLLPSSGGSIPSASGSIPTIPSNPSPPNPDEFEAPGPDSSALSPLGLPG-SFAAPKPLPPYSNSLLLLTALSLHAF
        S  Q+LSP+IAPLLPS G ++PS  GS  TIPS+PSPP+PD  +   PD  A SP   P  S  +P P  P +  LL+   +S  +F
Subjt:  SSFQELSPDIAPLLPSSGGSIPSASGSIPTIPSNPSPPNPDEFEAPGPDSSALSPLGLPG-SFAAPKPLPPYSNSLLLLTALSLHAF

Arabidopsis top hitse value%identityAlignment
AT5G18690.1 arabinogalactan protein 251.0e-0847.13Show/hide
Query:  SSFQELSPDIAPLLPSSGGSIPSASGSIPTIPSNPSPPNPDEFEAPGPDSSALSPLGLPG-SFAAPKPLPPYSNSLLLLTALSLHAF
        S  Q+LSP+IAPLLPS G ++PS  GS  TIPS+PSPP+PD  +   PD  A SP   P  S  +P P  P +  LL+   +S  +F
Subjt:  SSFQELSPDIAPLLPSSGGSIPSASGSIPTIPSNPSPPNPDEFEAPGPDSSALSPLGLPG-SFAAPKPLPPYSNSLLLLTALSLHAF


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTTTGAGGTTTCTGCGGGAACAGTTGCGCTTCATGAACTGGCGTCTGATCCTCCACTGATCGCAGCAGTCATTATGGCACTCATGGCCTCACCTTTGCTTGCTTTACC
ATCTCTACCCAATCCAAAACTCAGCTCCTCTTTTCAAGAACTCTCCCCTGATATTGCTCCATTATTGCCTTCTTCAGGCGGTAGCATTCCTTCTGCATCTGGTTCGATTC
CCACCATTCCTTCCAACCCCAGCCCTCCAAATCCAGACGAGTTCGAGGCTCCTGGTCCTGATTCCTCTGCCCTTTCCCCACTTGGGCTACCAGGTTCCTTCGCAGCCCCT
AAACCCCTGCCTCCCTATTCAAATTCCCTTCTTCTTCTCACTGCCCTATCTCTTCATGCCTTCTATCTGCACTTACATTGA
mRNA sequenceShow/hide mRNA sequence
AATAATTAGGGATTAAGTGCGTTGATGTTTAGCAGATGAACAAAATTCTGCACGAAGCAAATTAATAGGTCTCACTTATTGTACGAAGAGTGAATTCTCAGCTGTTTTTT
GCTCCGAGGAGTTTGTACTTCAAATCTCGGAAAAGTAATCACCATTAGAGACTGCTGAATTTGTTTCATCTCTGACTTGTTGAACTTTTGATTTTGCATTGTATACAAGC
TGGAATTTGAATGTTTGAGGTTTCTGCGGGAACAGTTGCGCTTCATGAACTGGCGTCTGATCCTCCACTGATCGCAGCAGTCATTATGGCACTCATGGCCTCACCTTTGC
TTGCTTTACCATCTCTACCCAATCCAAAACTCAGCTCCTCTTTTCAAGAACTCTCCCCTGATATTGCTCCATTATTGCCTTCTTCAGGCGGTAGCATTCCTTCTGCATCT
GGTTCGATTCCCACCATTCCTTCCAACCCCAGCCCTCCAAATCCAGACGAGTTCGAGGCTCCTGGTCCTGATTCCTCTGCCCTTTCCCCACTTGGGCTACCAGGTTCCTT
CGCAGCCCCTAAACCCCTGCCTCCCTATTCAAATTCCCTTCTTCTTCTCACTGCCCTATCTCTTCATGCCTTCTATCTGCACTTACATTGA
Protein sequenceShow/hide protein sequence
MFEVSAGTVALHELASDPPLIAAVIMALMASPLLALPSLPNPKLSSSFQELSPDIAPLLPSSGGSIPSASGSIPTIPSNPSPPNPDEFEAPGPDSSALSPLGLPGSFAAP
KPLPPYSNSLLLLTALSLHAFYLHLH