CuGenDBv2

Gene ID	CmoCh17G003100
Organism	Cucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
Description	40S ribosomal protein S21
Genome location	Cmo_Chr17:1882835..1884731
RNA-Seq Expression	CmoCh17G003100
Synteny	CmoCh17G003100
Gene Ontology terms	GO:0000447 - endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) (biological process) GO:0000461 - endonucleolytic cleavage to generate mature 3'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA) (biological process) GO:0006412 - translation (biological process) GO:0022627 - cytosolic small ribosomal subunit (cellular component) GO:0003735 - structural constituent of ribosome (molecular function)
InterPro domains	IPR001931 - Ribosomal protein S21e IPR038579 - Ribosomal protein S21e superfamily

Homology

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GenBank top hits

e value

%identity

Alignment

KAG6575063.1 40S ribosomal protein S21-2, partial [Cucurbita argyrosperma subsp. sororia]

1.8e-35

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Query:  MQNEEGKITELYIPRKWCVVSAIRFSATNRLITSKDHASVQINVGHLDENGIYTGQFSTFALCGYIRAQGDADSAIDRLWQKKKVEVRQQ
        MQNEEGKITELYIPRK         SATNRLITSKDHASVQINVGHLDENGIYTGQFSTFALCGYIRAQGDADSAIDRLWQKKKVEVRQQ
Subjt:  MQNEEGKITELYIPRKWCVVSAIRFSATNRLITSKDHASVQINVGHLDENGIYTGQFSTFALCGYIRAQGDADSAIDRLWQKKKVEVRQQ

XP_022930553.1 40S ribosomal protein S21-2-like [Cucurbita moschata]

3.1e-35

88.89

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Query:  MQNEEGKITELYIPRKWCVVSAIRFSATNRLITSKDHASVQINVGHLDENGIYTGQFSTFALCGYIRAQGDADSAIDRLWQKKKVEVRQQ
        MQNEEGKITELYIPRK         SATNRLITSKDHASVQINVGHLDENGIYTGQFSTFALCGYIRAQGDADSA+DRLWQKKKVEVRQQ
Subjt:  MQNEEGKITELYIPRKWCVVSAIRFSATNRLITSKDHASVQINVGHLDENGIYTGQFSTFALCGYIRAQGDADSAIDRLWQKKKVEVRQQ

XP_022959408.1 40S ribosomal protein S21-2 isoform X1 [Cucurbita moschata]

1.8e-35

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Query:  MQNEEGKITELYIPRKWCVVSAIRFSATNRLITSKDHASVQINVGHLDENGIYTGQFSTFALCGYIRAQGDADSAIDRLWQKKKVEVRQQ
        MQNEEGKITELYIPRK         SATNRLITSKDHASVQINVGHLDENGIYTGQFSTFALCGYIRAQGDADSAIDRLWQKKKVEVRQQ
Subjt:  MQNEEGKITELYIPRKWCVVSAIRFSATNRLITSKDHASVQINVGHLDENGIYTGQFSTFALCGYIRAQGDADSAIDRLWQKKKVEVRQQ

XP_022959410.1 40S ribosomal protein S21-2 isoform X2 [Cucurbita moschata]

1.8e-35

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Query:  MQNEEGKITELYIPRKWCVVSAIRFSATNRLITSKDHASVQINVGHLDENGIYTGQFSTFALCGYIRAQGDADSAIDRLWQKKKVEVRQQ
        MQNEEGKITELYIPRK         SATNRLITSKDHASVQINVGHLDENGIYTGQFSTFALCGYIRAQGDADSAIDRLWQKKKVEVRQQ
Subjt:  MQNEEGKITELYIPRKWCVVSAIRFSATNRLITSKDHASVQINVGHLDENGIYTGQFSTFALCGYIRAQGDADSAIDRLWQKKKVEVRQQ

XP_023006434.1 40S ribosomal protein S21-2 [Cucurbita maxima]

6.9e-35

88.76

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Query:  MQNEEGKITELYIPRKWCVVSAIRFSATNRLITSKDHASVQINVGHLDENGIYTGQFSTFALCGYIRAQGDADSAIDRLWQKKKVEVRQ
        MQNEEGKITELYIPRK         SATNRLITSKDHASVQINVGHLDENGIYTGQFSTFALCGYIRAQGDADSAIDRLWQKKKVE+RQ
Subjt:  MQNEEGKITELYIPRKWCVVSAIRFSATNRLITSKDHASVQINVGHLDENGIYTGQFSTFALCGYIRAQGDADSAIDRLWQKKKVEVRQ

TrEMBL top hits

e value

%identity

Alignment

A0A6J1EVJ7 40S ribosomal protein S21

1.5e-35

88.89

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Query:  MQNEEGKITELYIPRKWCVVSAIRFSATNRLITSKDHASVQINVGHLDENGIYTGQFSTFALCGYIRAQGDADSAIDRLWQKKKVEVRQQ
        MQNEEGKITELYIPRK         SATNRLITSKDHASVQINVGHLDENGIYTGQFSTFALCGYIRAQGDADSA+DRLWQKKKVEVRQQ
Subjt:  MQNEEGKITELYIPRKWCVVSAIRFSATNRLITSKDHASVQINVGHLDENGIYTGQFSTFALCGYIRAQGDADSAIDRLWQKKKVEVRQQ

A0A6J1H674 40S ribosomal protein S21

8.8e-36

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Query:  MQNEEGKITELYIPRKWCVVSAIRFSATNRLITSKDHASVQINVGHLDENGIYTGQFSTFALCGYIRAQGDADSAIDRLWQKKKVEVRQQ
        MQNEEGKITELYIPRK         SATNRLITSKDHASVQINVGHLDENGIYTGQFSTFALCGYIRAQGDADSAIDRLWQKKKVEVRQQ
Subjt:  MQNEEGKITELYIPRKWCVVSAIRFSATNRLITSKDHASVQINVGHLDENGIYTGQFSTFALCGYIRAQGDADSAIDRLWQKKKVEVRQQ

A0A6J1H7Z5 40S ribosomal protein S21-2 isoform X1

8.8e-36

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Query:  MQNEEGKITELYIPRKWCVVSAIRFSATNRLITSKDHASVQINVGHLDENGIYTGQFSTFALCGYIRAQGDADSAIDRLWQKKKVEVRQQ
        MQNEEGKITELYIPRK         SATNRLITSKDHASVQINVGHLDENGIYTGQFSTFALCGYIRAQGDADSAIDRLWQKKKVEVRQQ
Subjt:  MQNEEGKITELYIPRKWCVVSAIRFSATNRLITSKDHASVQINVGHLDENGIYTGQFSTFALCGYIRAQGDADSAIDRLWQKKKVEVRQQ

A0A6J1KDN2 40S ribosomal protein S21

1.5e-35

88.89

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Query:  MQNEEGKITELYIPRKWCVVSAIRFSATNRLITSKDHASVQINVGHLDENGIYTGQFSTFALCGYIRAQGDADSAIDRLWQKKKVEVRQQ
        MQNEEGKITELYIPRK         SATNRLITSKDHASVQINVGHLDENGIYTGQFSTFALCGYIRAQGDADSA+DRLWQKKKVEVRQQ
Subjt:  MQNEEGKITELYIPRKWCVVSAIRFSATNRLITSKDHASVQINVGHLDENGIYTGQFSTFALCGYIRAQGDADSAIDRLWQKKKVEVRQQ

A0A6J1L257 40S ribosomal protein S21

3.3e-35

88.76

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Query:  MQNEEGKITELYIPRKWCVVSAIRFSATNRLITSKDHASVQINVGHLDENGIYTGQFSTFALCGYIRAQGDADSAIDRLWQKKKVEVRQ
        MQNEEGKITELYIPRK         SATNRLITSKDHASVQINVGHLDENGIYTGQFSTFALCGYIRAQGDADSAIDRLWQKKKVE+RQ
Subjt:  MQNEEGKITELYIPRKWCVVSAIRFSATNRLITSKDHASVQINVGHLDENGIYTGQFSTFALCGYIRAQGDADSAIDRLWQKKKVEVRQ

SwissProt top hits

e value

%identity

Alignment

P35687 40S ribosomal protein S21

1.1e-30

68.89

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Query:  MQNEEGKITELYIPRKWCVVSAIRFSATNRLITSKDHASVQINVGHLDENGIYTGQFSTFALCGYIRAQGDADSAIDRLWQKKKVEVRQQ
        MQNEEG++ +LY+PRK         SATNR+IT+KDHASVQIN+GH+DENG+Y G+F+TFAL G+IRAQGDADSA+DRLWQK+K EV+QQ
Subjt:  MQNEEGKITELYIPRKWCVVSAIRFSATNRLITSKDHASVQINVGHLDENGIYTGQFSTFALCGYIRAQGDADSAIDRLWQKKKVEVRQQ

Q3E902 40S ribosomal protein S21-2

1.0e-33

75.28

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Query:  MQNEEGKITELYIPRKWCVVSAIRFSATNRLITSKDHASVQINVGHLDENGIYTGQFSTFALCGYIRAQGDADSAIDRLWQKKKVEVRQ
        MQNEEG++TELYIPRK         SATNRLITSKDHASVQ+N+GHLD NG+YTGQF+TFALCG++RAQGDADS +DRLWQKKKVE +Q
Subjt:  MQNEEGKITELYIPRKWCVVSAIRFSATNRLITSKDHASVQINVGHLDENGIYTGQFSTFALCGYIRAQGDADSAIDRLWQKKKVEVRQ

Q41852 40S ribosomal protein S21

9.1e-30

67.42

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Query:  MQNEEGKITELYIPRKWCVVSAIRFSATNRLITSKDHASVQINVGHLDENGIYTGQFSTFALCGYIRAQGDADSAIDRLWQKKKVEVRQ
        MQNEEGK  +LY+PRK         SATNR+IT+KDHASVQIN+GHLD NG+Y G F+TFAL G++RAQGDADS++DRLWQKKK E++Q
Subjt:  MQNEEGKITELYIPRKWCVVSAIRFSATNRLITSKDHASVQINVGHLDENGIYTGQFSTFALCGYIRAQGDADSAIDRLWQKKKVEVRQ

Q9M337 40S ribosomal protein S21-1

1.5e-32

71.11

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Query:  MQNEEGKITELYIPRKWCVVSAIRFSATNRLITSKDHASVQINVGHLDENGIYTGQFSTFALCGYIRAQGDADSAIDRLWQKKKVEVRQQ
        M+N+ G++TELYIPRK         SATNR+ITSKDHASVQ+N+GHLD NG+YTGQF+TFALCG++RAQGDADS +DRLWQKKKVE +QQ
Subjt:  MQNEEGKITELYIPRKWCVVSAIRFSATNRLITSKDHASVQINVGHLDENGIYTGQFSTFALCGYIRAQGDADSAIDRLWQKKKVEVRQQ

Q9SMI2 40S ribosomal protein S21

2.0e-21

59.04

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Query:  MQNEEGKITELYIPRKWCVVSAIRFSATNRLITSKDHASVQINVGHLDEN-GIYTGQFSTFALCGYIRAQGDADSAIDRLWQK
        MQN+EGKI +LYIPRK         SATNRLI++ DHA+VQINVGH+D N G+YTG ++TFALCG++R+ G++D+A++RL  K
Subjt:  MQNEEGKITELYIPRKWCVVSAIRFSATNRLITSKDHASVQINVGHLDEN-GIYTGQFSTFALCGYIRAQGDADSAIDRLWQK

Arabidopsis top hits

e value

%identity

Alignment

AT3G53890.1 Ribosomal protein S21e

1.1e-33

71.11

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Query:  MQNEEGKITELYIPRKWCVVSAIRFSATNRLITSKDHASVQINVGHLDENGIYTGQFSTFALCGYIRAQGDADSAIDRLWQKKKVEVRQQ
        M+N+ G++TELYIPRK         SATNR+ITSKDHASVQ+N+GHLD NG+YTGQF+TFALCG++RAQGDADS +DRLWQKKKVE +QQ
Subjt:  MQNEEGKITELYIPRKWCVVSAIRFSATNRLITSKDHASVQINVGHLDENGIYTGQFSTFALCGYIRAQGDADSAIDRLWQKKKVEVRQQ

AT3G53890.2 Ribosomal protein S21e

1.1e-33

71.11

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Query:  MQNEEGKITELYIPRKWCVVSAIRFSATNRLITSKDHASVQINVGHLDENGIYTGQFSTFALCGYIRAQGDADSAIDRLWQKKKVEVRQQ
        M+N+ G++TELYIPRK         SATNR+ITSKDHASVQ+N+GHLD NG+YTGQF+TFALCG++RAQGDADS +DRLWQKKKVE +QQ
Subjt:  MQNEEGKITELYIPRKWCVVSAIRFSATNRLITSKDHASVQINVGHLDENGIYTGQFSTFALCGYIRAQGDADSAIDRLWQKKKVEVRQQ

AT5G27700.1 Ribosomal protein S21e

7.4e-35

75.28

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Query:  MQNEEGKITELYIPRKWCVVSAIRFSATNRLITSKDHASVQINVGHLDENGIYTGQFSTFALCGYIRAQGDADSAIDRLWQKKKVEVRQ
        MQNEEG++TELYIPRK         SATNRLITSKDHASVQ+N+GHLD NG+YTGQF+TFALCG++RAQGDADS +DRLWQKKKVE +Q
Subjt:  MQNEEGKITELYIPRKWCVVSAIRFSATNRLITSKDHASVQINVGHLDENGIYTGQFSTFALCGYIRAQGDADSAIDRLWQKKKVEVRQ

Sequences

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CDS sequence

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mRNA sequence

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ATGCAGAACGAAGAAGGAAAGATCACTGAGCTCTACATTCCTAGGAAATGGTGCGTAGTCAGCGCAATTCGTTTCTCTGCGACGAACCGACTTATCACCTCCAAGGACCA
CGCTTCGGTTCAGATTAATGTTGGTCACTTGGATGAGAATGGCATCTACACAGGTCAATTCTCCACTTTCGCACTCTGCGGTTATATCCGTGCTCAGGGAGACGCGGACA
GTGCTATAGACAGGTTATGGCAGAAGAAGAAAGTTGAAGTTCGCCAACAGTAGAAGTTGCTAAATTTATTTCCATTCGAGTTTTTAGTTAATTGCGAATTATGGATGTTT
TGAGAATTCCTTTGGTAACCTTTTGATGAACACGTTTATAAAGTTCTAGTGTTTGTTGAAATGTTCATTTGATGAAACCTGAATTTTGATCACTCATTAGTAGATTCATG
TTCGTACTTTTTATCAATATCGATTTATTATAGTAATTTTTTTTT

Protein sequence

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MQNEEGKITELYIPRKWCVVSAIRFSATNRLITSKDHASVQINVGHLDENGIYTGQFSTFALCGYIRAQGDADSAIDRLWQKKKVEVRQQ

CmoCh17G003100 (gene) of Cucurbita moschata (Rifu) v1 genome