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CmoCh17G003250 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh17G003250
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
DescriptionDynein light chain
Genome locationCmo_Chr17:1965954..1968646
RNA-Seq ExpressionCmoCh17G003250
SyntenyCmoCh17G003250
Gene Ontology termsGO:0007017 - microtubule-based process (biological process)
GO:0005737 - cytoplasm (cellular component)
GO:0005874 - microtubule (cellular component)
GO:0016021 - integral component of membrane (cellular component)
GO:0030286 - dynein complex (cellular component)
GO:0045505 - dynein intermediate chain binding (molecular function)
GO:0051959 - dynein light intermediate chain binding (molecular function)
InterPro domainsIPR001372 - Dynein light chain, type 1/2
IPR037177 - Dynein light chain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG7013650.1 Dynein light chain 1, cytoplasmic [Cucurbita argyrosperma subsp. argyrosperma]2.4e-42100Show/hide
Query:  MSNDAKRSIQGNLMVKSVSEDRKPLAVATTGKKIVIKSADMFGDVQKEAIDVAIAAFEKHSVEKDVAEYIKKEFDKRHGPTWHCIVGRNFG
        MSNDAKRSIQGNLMVKSVSEDRKPLAVATTGKKIVIKSADMFGDVQKEAIDVAIAAFEKHSVEKDVAEYIKKEFDKRHGPTWHCIVGRNFG
Subjt:  MSNDAKRSIQGNLMVKSVSEDRKPLAVATTGKKIVIKSADMFGDVQKEAIDVAIAAFEKHSVEKDVAEYIKKEFDKRHGPTWHCIVGRNFG

XP_022930226.1 dynein light chain 1, cytoplasmic-like [Cucurbita moschata]1.7e-4094.51Show/hide
Query:  MSNDAKRSIQGNLMVKSVSEDRKPLAVATTGKKIVIKSADMFGDVQKEAIDVAIAAFEKHSVEKDVAEYIKKEFDKRHGPTWHCIVGRNFG
        MSNDAKRSIQGN MVK+VSEDRKP+AVATTGKKIVIKSADMFGDVQKEA+DVAI AFEKHSVEKDVAEYIKKEFDKRHGPTWHCIVGRNFG
Subjt:  MSNDAKRSIQGNLMVKSVSEDRKPLAVATTGKKIVIKSADMFGDVQKEAIDVAIAAFEKHSVEKDVAEYIKKEFDKRHGPTWHCIVGRNFG

XP_022959519.1 dynein light chain 1, cytoplasmic-like [Cucurbita moschata]2.4e-42100Show/hide
Query:  MSNDAKRSIQGNLMVKSVSEDRKPLAVATTGKKIVIKSADMFGDVQKEAIDVAIAAFEKHSVEKDVAEYIKKEFDKRHGPTWHCIVGRNFG
        MSNDAKRSIQGNLMVKSVSEDRKPLAVATTGKKIVIKSADMFGDVQKEAIDVAIAAFEKHSVEKDVAEYIKKEFDKRHGPTWHCIVGRNFG
Subjt:  MSNDAKRSIQGNLMVKSVSEDRKPLAVATTGKKIVIKSADMFGDVQKEAIDVAIAAFEKHSVEKDVAEYIKKEFDKRHGPTWHCIVGRNFG

XP_023006429.1 dynein light chain 1, cytoplasmic [Cucurbita maxima]1.6e-4197.8Show/hide
Query:  MSNDAKRSIQGNLMVKSVSEDRKPLAVATTGKKIVIKSADMFGDVQKEAIDVAIAAFEKHSVEKDVAEYIKKEFDKRHGPTWHCIVGRNFG
        MSNDAKRSIQGNLMVKSVSEDRKPL +ATTGKKIVIKSADMFGDVQKEAIDVAIAAFEKHSVEKDVAEYIKKEFDKRHGPTWHCIVGRNFG
Subjt:  MSNDAKRSIQGNLMVKSVSEDRKPLAVATTGKKIVIKSADMFGDVQKEAIDVAIAAFEKHSVEKDVAEYIKKEFDKRHGPTWHCIVGRNFG

XP_023513722.1 dynein light chain 1, cytoplasmic-like [Cucurbita pepo subsp. pepo]7.7e-4195.6Show/hide
Query:  MSNDAKRSIQGNLMVKSVSEDRKPLAVATTGKKIVIKSADMFGDVQKEAIDVAIAAFEKHSVEKDVAEYIKKEFDKRHGPTWHCIVGRNFG
        MSNDAKRSIQGN MVKSVSEDRKP+AVATTGKKIVIKSADMFGDVQKEA+DVAI AFEKHSVEKDVAEYIKKEFDKRHGPTWHCIVGRNFG
Subjt:  MSNDAKRSIQGNLMVKSVSEDRKPLAVATTGKKIVIKSADMFGDVQKEAIDVAIAAFEKHSVEKDVAEYIKKEFDKRHGPTWHCIVGRNFG

TrEMBL top hitse value%identityAlignment
A0A1S3C7T8 Dynein light chain1.2e-3994.51Show/hide
Query:  MSNDAKRSIQGNLMVKSVSEDRKPLAVATTGKKIVIKSADMFGDVQKEAIDVAIAAFEKHSVEKDVAEYIKKEFDKRHGPTWHCIVGRNFG
        MSNDAKRSIQGNLMVKSVSEDRKP AV  TGKKIVIKSADMFGDVQKEAIDVAIAAFEKHSVEKD+AE IKKEFDKRHGPTWHCIVGRNFG
Subjt:  MSNDAKRSIQGNLMVKSVSEDRKPLAVATTGKKIVIKSADMFGDVQKEAIDVAIAAFEKHSVEKDVAEYIKKEFDKRHGPTWHCIVGRNFG

A0A6J1EQC6 Dynein light chain8.4e-4194.51Show/hide
Query:  MSNDAKRSIQGNLMVKSVSEDRKPLAVATTGKKIVIKSADMFGDVQKEAIDVAIAAFEKHSVEKDVAEYIKKEFDKRHGPTWHCIVGRNFG
        MSNDAKRSIQGN MVK+VSEDRKP+AVATTGKKIVIKSADMFGDVQKEA+DVAI AFEKHSVEKDVAEYIKKEFDKRHGPTWHCIVGRNFG
Subjt:  MSNDAKRSIQGNLMVKSVSEDRKPLAVATTGKKIVIKSADMFGDVQKEAIDVAIAAFEKHSVEKDVAEYIKKEFDKRHGPTWHCIVGRNFG

A0A6J1H8A5 Dynein light chain1.2e-42100Show/hide
Query:  MSNDAKRSIQGNLMVKSVSEDRKPLAVATTGKKIVIKSADMFGDVQKEAIDVAIAAFEKHSVEKDVAEYIKKEFDKRHGPTWHCIVGRNFG
        MSNDAKRSIQGNLMVKSVSEDRKPLAVATTGKKIVIKSADMFGDVQKEAIDVAIAAFEKHSVEKDVAEYIKKEFDKRHGPTWHCIVGRNFG
Subjt:  MSNDAKRSIQGNLMVKSVSEDRKPLAVATTGKKIVIKSADMFGDVQKEAIDVAIAAFEKHSVEKDVAEYIKKEFDKRHGPTWHCIVGRNFG

A0A6J1KH59 Dynein light chain1.1e-4093.41Show/hide
Query:  MSNDAKRSIQGNLMVKSVSEDRKPLAVATTGKKIVIKSADMFGDVQKEAIDVAIAAFEKHSVEKDVAEYIKKEFDKRHGPTWHCIVGRNFG
        MSNDAKRSIQGN MVK+VSEDRKP+AVATTGKKIVIKSADMFGDVQKEA+D+AI AFEKHSVEKDVAEYIKKEFDKRHGPTWHCIVGRNFG
Subjt:  MSNDAKRSIQGNLMVKSVSEDRKPLAVATTGKKIVIKSADMFGDVQKEAIDVAIAAFEKHSVEKDVAEYIKKEFDKRHGPTWHCIVGRNFG

A0A6J1L253 Dynein light chain7.6e-4297.8Show/hide
Query:  MSNDAKRSIQGNLMVKSVSEDRKPLAVATTGKKIVIKSADMFGDVQKEAIDVAIAAFEKHSVEKDVAEYIKKEFDKRHGPTWHCIVGRNFG
        MSNDAKRSIQGNLMVKSVSEDRKPL +ATTGKKIVIKSADMFGDVQKEAIDVAIAAFEKHSVEKDVAEYIKKEFDKRHGPTWHCIVGRNFG
Subjt:  MSNDAKRSIQGNLMVKSVSEDRKPLAVATTGKKIVIKSADMFGDVQKEAIDVAIAAFEKHSVEKDVAEYIKKEFDKRHGPTWHCIVGRNFG

SwissProt top hitse value%identityAlignment
Q22799 Dynein light chain 1, cytoplasmic2.5e-1857.53Show/hide
Query:  KKIVIKSADMFGDVQKEAIDVAIAAFEKHSVEKDVAEYIKKEFDKRHGPTWHCIVGRNFGKDLSLPLKFQLKF
        +K VIK+ADM  D+Q++AID A  A EK+++EKD+A YIKKEFDK++ PTWHCIVGRNFG  ++   K  + F
Subjt:  KKIVIKSADMFGDVQKEAIDVAIAAFEKHSVEKDVAEYIKKEFDKRHGPTWHCIVGRNFGKDLSLPLKFQLKF

Q3MHR3 Dynein light chain 2, cytoplasmic4.3e-1856.16Show/hide
Query:  KKIVIKSADMFGDVQKEAIDVAIAAFEKHSVEKDVAEYIKKEFDKRHGPTWHCIVGRNFGKDLSLPLKFQLKF
        +K VIK+ADM  D+Q++A+D A  A EK+++EKD+A YIKKEFDK++ PTWHCIVGRNFG  ++   K  + F
Subjt:  KKIVIKSADMFGDVQKEAIDVAIAAFEKHSVEKDVAEYIKKEFDKRHGPTWHCIVGRNFGKDLSLPLKFQLKF

Q78P75 Dynein light chain 2, cytoplasmic4.3e-1856.16Show/hide
Query:  KKIVIKSADMFGDVQKEAIDVAIAAFEKHSVEKDVAEYIKKEFDKRHGPTWHCIVGRNFGKDLSLPLKFQLKF
        +K VIK+ADM  D+Q++A+D A  A EK+++EKD+A YIKKEFDK++ PTWHCIVGRNFG  ++   K  + F
Subjt:  KKIVIKSADMFGDVQKEAIDVAIAAFEKHSVEKDVAEYIKKEFDKRHGPTWHCIVGRNFGKDLSLPLKFQLKF

Q96FJ2 Dynein light chain 2, cytoplasmic4.3e-1856.16Show/hide
Query:  KKIVIKSADMFGDVQKEAIDVAIAAFEKHSVEKDVAEYIKKEFDKRHGPTWHCIVGRNFGKDLSLPLKFQLKF
        +K VIK+ADM  D+Q++A+D A  A EK+++EKD+A YIKKEFDK++ PTWHCIVGRNFG  ++   K  + F
Subjt:  KKIVIKSADMFGDVQKEAIDVAIAAFEKHSVEKDVAEYIKKEFDKRHGPTWHCIVGRNFGKDLSLPLKFQLKF

Q9D0M5 Dynein light chain 2, cytoplasmic4.3e-1856.16Show/hide
Query:  KKIVIKSADMFGDVQKEAIDVAIAAFEKHSVEKDVAEYIKKEFDKRHGPTWHCIVGRNFGKDLSLPLKFQLKF
        +K VIK+ADM  D+Q++A+D A  A EK+++EKD+A YIKKEFDK++ PTWHCIVGRNFG  ++   K  + F
Subjt:  KKIVIKSADMFGDVQKEAIDVAIAAFEKHSVEKDVAEYIKKEFDKRHGPTWHCIVGRNFGKDLSLPLKFQLKF

Arabidopsis top hitse value%identityAlignment
AT1G52240.2 RHO guanyl-nucleotide exchange factor 112.3e-0640.98Show/hide
Query:  KIVIKSADMFGDVQKEAIDVAIAAFEKHSVE--KDVAEYIKKEFDKRHGPTWHCIVGRNFG
        K +++ +DM   +Q +A+  A  A +   V   K +A +IKKEFD+R+G  W C+VG NFG
Subjt:  KIVIKSADMFGDVQKEAIDVAIAAFEKHSVE--KDVAEYIKKEFDKRHGPTWHCIVGRNFG

AT3G16120.1 Dynein light chain type 1 family protein1.1e-0537.7Show/hide
Query:  KIVIKSADMFGDVQKEAIDVAIAAFEKHSV--EKDVAEYIKKEFDKRHGPTWHCIVGRNFG
        K  ++  DM   +Q +A+ +A  + +   V     +A +IKKEFD+R+G  W C+VG NFG
Subjt:  KIVIKSADMFGDVQKEAIDVAIAAFEKHSV--EKDVAEYIKKEFDKRHGPTWHCIVGRNFG

AT4G15930.1 Dynein light chain type 1 family protein1.8e-2459.34Show/hide
Query:  KRSIQGNLMVKSVSEDRKPL-----AVATTGKKIVIKSADMFGDVQKEAIDVAIAAFEKHSVEKDVAEYIKKEFDKRHGPTWHCIVGRNFG
        K+S+ G    +++ +DR+       A    GK+ VIKSADM  D+QKEAI++AI+AFEK+SVEKD+AE IKKEFDK+HG TWHCIVGRNFG
Subjt:  KRSIQGNLMVKSVSEDRKPL-----AVATTGKKIVIKSADMFGDVQKEAIDVAIAAFEKHSVEKDVAEYIKKEFDKRHGPTWHCIVGRNFG

AT4G27360.1 Dynein light chain type 1 family protein1.5e-0537.7Show/hide
Query:  KIVIKSADMFGDVQKEAIDVAIAAFEKHSVEK--DVAEYIKKEFDKRHGPTWHCIVGRNFG
        K V+   DM   ++++A+ +A  A +   V +   +A +IKKEFD+ +G  W CIVG +FG
Subjt:  KIVIKSADMFGDVQKEAIDVAIAAFEKHSVEK--DVAEYIKKEFDKRHGPTWHCIVGRNFG

AT5G20110.1 Dynein light chain type 1 family protein1.7e-0639.53Show/hide
Query:  QGNLMVKSVSEDRKP-LAVATTGKKIVIKSADMFGDVQKEAIDVA---IAAFEKHSVEKDVAEYIKKEFDKRHGPTWHCIVGRNFG
        +G   V  V  D    +  A     + I +ADM G +Q  A   A   + + EK S  K +A  +KKEFDK +GP WHCIVG +FG
Subjt:  QGNLMVKSVSEDRKP-LAVATTGKKIVIKSADMFGDVQKEAIDVA---IAAFEKHSVEKDVAEYIKKEFDKRHGPTWHCIVGRNFG


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGTAACGATGCTAAGAGAAGCATTCAAGGGAATCTAATGGTGAAATCTGTGTCGGAGGATCGGAAACCGCTGGCCGTGGCGACGACTGGCAAGAAAATCGTTATAAA
GAGTGCCGATATGTTTGGTGATGTGCAGAAGGAGGCCATCGATGTTGCCATAGCTGCATTTGAAAAGCATAGTGTTGAGAAAGATGTAGCAGAGTATATTAAGAAAGAGT
TCGATAAGAGGCATGGACCGACCTGGCACTGCATTGTTGGCCGTAATTTTGGTAAGGATCTCTCTCTTCCTCTAAAATTTCAACTCAAATTTTTGTGTTTTTGCTGA
mRNA sequenceShow/hide mRNA sequence
CTCTCAGATTCTGAGAATTCACGAGTTTTTCTTACAATTTCCAGTCAAATGATGAAGTAATTCCAAATTTCTTGAAACGAAAAAGTTGCAGAGATTGCAAAAAGGTTCCT
CTTCTCGCTACCGAATCGGCACAGAAGATCAGAGAAGAAGAAGAAGAAGAAGAAGCTGAAAATGAGTAACGATGCTAAGAGAAGCATTCAAGGGAATCTAATGGTGAAAT
CTGTGTCGGAGGATCGGAAACCGCTGGCCGTGGCGACGACTGGCAAGAAAATCGTTATAAAGAGTGCCGATATGTTTGGTGATGTGCAGAAGGAGGCCATCGATGTTGCC
ATAGCTGCATTTGAAAAGCATAGTGTTGAGAAAGATGTAGCAGAGTATATTAAGAAAGAGTTCGATAAGAGGCATGGACCGACCTGGCACTGCATTGTTGGCCGTAATTT
TGGTAAGGATCTCTCTCTTCCTCTAAAATTTCAACTCAAATTTTTGTGTTTTTGCTGATTGATAACATGCCTTCTGGCTTCAAGTTTGGTGGCGAAGGTTTACATTGTGA
ATGGAATAGATCTATGCTTGTAGGTTGCTTATGATGAATGTTTGATCTGGTTAAACTAGTCGAGTACTAAAAGGAGTTACTATTTCTAGATTGTGAATGTTCGATTTTTC
ACCTGCATTTGATAAACAAGAAGTCCTTCCACAAGATTTCATTTAATTGAGCTGATTTAGATTTGTAAAGTGTAACTTTTACAGGGAACATAAAAGTTTTTCTTCTCAAA
ATTTCACATTCCCTTTCCTTCTAACGTCTGATTTTAGTTTTTCATGAAATTTGAACTCAAAATCACCCTGGACTAATTTAGTGTTATGAGAGTGCGACGAGGCCACCACG
GTGTGGCTTACGATTTTAATAAGTTGGATGTATGAGGGTGAAATAACTCAAATCTATAGAAGTGATTATTAGGGGCGTGCTGAATTTTGAATCCACATCCAACCGTTATT
ACGAATAGCCACATTATGGTGACCTCATAGAACCATTTTTTCTTGTTGGAAAGTTAGATTAGTAAAGATGTAAATAGGTGAACCATAAGTTACCTCAAAAAAGAAACTGA
TACTATTGTCCCTTGCGGCTTCTAGAAGCTAGAAACTCTCCCTTCTGAACATAAGAACCTCTTAATCCTTTGAGCTGACTTCTACGGTAGGTTCGACGAACGTTTCTGTA
GGAGTTTTTGTTTTCGTTTTTGAGTTGGCAACCTATTCAATGAAGGTCACGCAGCCTAATGGAAAAGTGTCCCTTCCTGGCCCAGGGAGTGAGAGAGAGTCTAATCTGTC
ATCCACAACATTTGTCAAGTTCGTGCAGCACATTTATGTCCCTTTTTACTTCCATAATTTGACCAAGGTTTGAAAATTCTTACAAATTGCTTTTAGTTCTTGCTAACCAA
AACATATCCAGATCCGGAGACAGATTAGACATCCCAAATAATTCAACAAGAGAAAAGAATGGATTTGTTCATATTTGTGAGATCCCACATCGGTTGGAGAGGGGAACGAA
GCATTCCTTAGAAGGGTGTGGAAACCTCTTCCTAGAAGACACGTTTTAAAATCTTGAGGGAATCTCGAAAGGGAAAGCCTAAAGAGGACCATATTTGCTAGTGGTGGCTT
TGGGCCATTACAAATAGTATCATAGGCCGATACCAGGCGGTGTGCCAGCAAGGATGCTGGGTTTCCAAGGGGAGGGTGGATTGTGAGATCCCACATCGGTTGGAGAGGGG
AACAAAACATTCCTTATAAAGGTGTGGAAACCTCTCCCTAAAGGACGCGTTTTAAAACCTTGGGGGAAGTCTGAAAGGGAAAGCCCAAAAATGACAATATCTGCTAGCGG
TATCCTTGGGCCGTTGCAATATTTCTTGCAACCTCCCGAGTGGTCAACGTCCATGTTATCAACATCTAAGGATTTGAGATATGAATGGACTTGTCCATTCACTCTTTCAG
CAACGAAACCGCGTAATTCCTCCATATAAATTCCTTTATCTTTGTGAAGGAAGGCATTTTTACCATCAAGCTGATGCAAATACCAATCATGAGTCGTGGCTGTCAACGTG
ACATAAGTTGATCATTTGAGGGTTTCAAAATTTATTCTGTTATCTTTGTGAGAGAAAAAAAAAACATTCTTAACATCAAGTTGATGCAAAGCCAAAGCCAACGACGGGTA
GTGGTGATCGAAACGAATAACGTGACATAAGTCGAGAATTTTAGGTCGATGATCCTTAATGTTGAATTTCTGTTGTTTTTATGGCAGGTTCATATGTGACCCACGAGACA
AACCACTTTGTTTACTTCTACCTGGATCAGAAAGCAGTTTTACTATTCAAATCTGGTTGATAAACATGTATATTATGCAGATTAATGAATATGTTTAACTGATTATGATC
ATCGCTATTTAATCAAATGATGATATCCTTGTGGACAAGACAGTCTTCCCTTCTGCAACCTTTTTTTCCCCTTCTTATCTATGGATTTTGCTTAATACACTCTATCCTTT
TACTCTAGACATAATCAGCTTGTTCGCCCGTGTGAACAAAGCATTCG
Protein sequenceShow/hide protein sequence
MSNDAKRSIQGNLMVKSVSEDRKPLAVATTGKKIVIKSADMFGDVQKEAIDVAIAAFEKHSVEKDVAEYIKKEFDKRHGPTWHCIVGRNFGKDLSLPLKFQLKFLCFC