; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

CmoCh17G003570 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh17G003570
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
DescriptionABC transporter ABCE
Genome locationCmo_Chr17:2178696..2182637
RNA-Seq ExpressionCmoCh17G003570
SyntenyCmoCh17G003570
Gene Ontology termsGO:0000054 - ribosomal subunit export from nucleus (biological process)
GO:0006413 - translational initiation (biological process)
GO:0006415 - translational termination (biological process)
GO:0016020 - membrane (cellular component)
GO:0005506 - iron ion binding (molecular function)
GO:0005524 - ATP binding (molecular function)
GO:0043024 - ribosomal small subunit binding (molecular function)
GO:0051536 - iron-sulfur cluster binding (molecular function)
InterPro domainsIPR013283 - RLI1
IPR021039 - Iron-sulphur binding protein LdpA, C-terminal


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6575112.1 hypothetical protein SDJN03_25751, partial [Cucurbita argyrosperma subsp. sororia]3.3e-10794.04Show/hide
Query:  EIHTNGRQTTPFQELWDKLGDSSKYLRLVAVSLPNIGDLTISTMKTMFSIMESQLRCSNLWQLDGRPMSGDIGRGATRETIAFAAQLALSNDRPPGFLQL
        EIHTNGRQTTPFQELWDKLGDSSKYLRLVAVSLPNIGDLTISTMKTMFSIMESQLRCSNLWQLDGRPMSGDIGRGATRETIAFAAQLALSNDRPPGFLQL
Subjt:  EIHTNGRQTTPFQELWDKLGDSSKYLRLVAVSLPNIGDLTISTMKTMFSIMESQLRCSNLWQLDGRPMSGDIGRGATRETIAFAAQLALSNDRPPGFLQL

Query:  AGGTNFYTVDGLKKQGLFQSTSTRKSNICLLHLEDLMNKELSSSLHALIGGIAYGGYARKIVGRVLSSMQAQSGDSNIENYPDYLLAALVEALALVGTVK
        AGGTNFYTVDGLKKQGLFQSTSTRK         DLMNKELSSSLHALIGGIAYGGYARKIVGRVLSS+QAQSGDSNIE+YPD+LLAALVEALALVGTVK
Subjt:  AGGTNFYTVDGLKKQGLFQSTSTRKSNICLLHLEDLMNKELSSSLHALIGGIAYGGYARKIVGRVLSSMQAQSGDSNIENYPDYLLAALVEALALVGTVK

Query:  CYDPSLISSAKVNNSLSL
        CYDPSLISSAKVNNS SL
Subjt:  CYDPSLISSAKVNNSLSL

KAG7013681.1 hypothetical protein SDJN02_23848 [Cucurbita argyrosperma subsp. argyrosperma]2.8e-11498.17Show/hide
Query:  EIHTNGRQTTPFQELWDKLGDSSKYLRLVAVSLPNIGDLTISTMKTMFSIMESQLRCSNLWQLDGRPMSGDIGRGATRETIAFAAQLALSNDRPPGFLQL
        EIHTNGRQTTPFQELWDKLGDSSKYLRLVAVSLPNIGDLTISTMKTMFSIMESQLRCSNLWQLDGRPMSGDIGRGATRETIAFAAQLALSNDRPPGFLQL
Subjt:  EIHTNGRQTTPFQELWDKLGDSSKYLRLVAVSLPNIGDLTISTMKTMFSIMESQLRCSNLWQLDGRPMSGDIGRGATRETIAFAAQLALSNDRPPGFLQL

Query:  AGGTNFYTVDGLKKQGLFQSTSTRKSNICLLHLEDLMNKELSSSLHALIGGIAYGGYARKIVGRVLSSMQAQSGDSNIENYPDYLLAALVEALALVGTVK
        AGGTNFYTVDGLKKQGLFQSTSTRKSNI LLHLEDLMNKELSSSLHALIGGIAYGGYARKIVGRVLSSMQAQSGDSNIE+YPD+LLAALVEALALVGTVK
Subjt:  AGGTNFYTVDGLKKQGLFQSTSTRKSNICLLHLEDLMNKELSSSLHALIGGIAYGGYARKIVGRVLSSMQAQSGDSNIENYPDYLLAALVEALALVGTVK

Query:  CYDPSLISSAKVNNSLSL
        CYDPSLISSAKVNNS SL
Subjt:  CYDPSLISSAKVNNSLSL

XP_022958999.1 uncharacterized protein LOC111460121 [Cucurbita moschata]2.1e-10995.87Show/hide
Query:  EIHTNGRQTTPFQELWDKLGDSSKYLRLVAVSLPNIGDLTISTMKTMFSIMESQLRCSNLWQLDGRPMSGDIGRGATRETIAFAAQLALSNDRPPGFLQL
        EIHTNGRQTTPFQELWDKLGDSSKYLRLVAVSLPNIGDLTISTMKTMFSIMESQLRCSNLWQLDGRPMSGDIGRGATRETIAFAAQLALSNDRPPGFLQL
Subjt:  EIHTNGRQTTPFQELWDKLGDSSKYLRLVAVSLPNIGDLTISTMKTMFSIMESQLRCSNLWQLDGRPMSGDIGRGATRETIAFAAQLALSNDRPPGFLQL

Query:  AGGTNFYTVDGLKKQGLFQSTSTRKSNICLLHLEDLMNKELSSSLHALIGGIAYGGYARKIVGRVLSSMQAQSGDSNIENYPDYLLAALVEALALVGTVK
        AGGTNFYTVDGLKKQGLFQSTSTRK         DLMNKELSSSLHALIGGIAYGGYARKIVGRVLSSMQAQSGDSNIENYPDYLLAALVEALALVGTVK
Subjt:  AGGTNFYTVDGLKKQGLFQSTSTRKSNICLLHLEDLMNKELSSSLHALIGGIAYGGYARKIVGRVLSSMQAQSGDSNIENYPDYLLAALVEALALVGTVK

Query:  CYDPSLISSAKVNNSLSL
        CYDPSLISSAKVNNSLSL
Subjt:  CYDPSLISSAKVNNSLSL

XP_023006432.1 uncharacterized protein LOC111499161 isoform X1 [Cucurbita maxima]2.5e-10290.83Show/hide
Query:  EIHTNGRQTTPFQELWDKLGDSSKYLRLVAVSLPNIGDLTISTMKTMFSIMESQLRCSNLWQLDGRPMSGDIGRGATRETIAFAAQLALSNDRPPGFLQL
        EIHTNGRQTTPFQELW+KLGDSSKYLRLVAVSLPNIGDLTISTMKTMFSIMESQLRC NLWQLDGRPMSGDIGRGATRETIAFAAQLALSNDRPPGFLQL
Subjt:  EIHTNGRQTTPFQELWDKLGDSSKYLRLVAVSLPNIGDLTISTMKTMFSIMESQLRCSNLWQLDGRPMSGDIGRGATRETIAFAAQLALSNDRPPGFLQL

Query:  AGGTNFYTVDGLKKQGLFQSTSTRKSNICLLHLEDLMNKELSSSLHALIGGIAYGGYARKIVGRVLSSMQAQSGDSNIENYPDYLLAALVEALALVGTVK
        AGGTNFYTVDGLKKQGLFQS             +DLM+KELSSSLHALIGGIAYGGYARKIVGRVLSSMQAQSGDSNIE+YPDYLLAALVEAL LVGTVK
Subjt:  AGGTNFYTVDGLKKQGLFQSTSTRKSNICLLHLEDLMNKELSSSLHALIGGIAYGGYARKIVGRVLSSMQAQSGDSNIENYPDYLLAALVEALALVGTVK

Query:  CYDPSLISSAKVNNSLSL
         YDPSLISSAKVNNSLSL
Subjt:  CYDPSLISSAKVNNSLSL

XP_023547405.1 uncharacterized protein LOC111806365 isoform X1 [Cucurbita pepo subsp. pepo]2.8e-10693.58Show/hide
Query:  EIHTNGRQTTPFQELWDKLGDSSKYLRLVAVSLPNIGDLTISTMKTMFSIMESQLRCSNLWQLDGRPMSGDIGRGATRETIAFAAQLALSNDRPPGFLQL
        EIHTNGRQTT FQELWDKLGDSSKYLRLVAVSLPNIGDLTISTMKTMFSIMESQLRCSNLWQLDGRPMSGDIGRGATRETIAFAA LALSNDRPPGFLQL
Subjt:  EIHTNGRQTTPFQELWDKLGDSSKYLRLVAVSLPNIGDLTISTMKTMFSIMESQLRCSNLWQLDGRPMSGDIGRGATRETIAFAAQLALSNDRPPGFLQL

Query:  AGGTNFYTVDGLKKQGLFQSTSTRKSNICLLHLEDLMNKELSSSLHALIGGIAYGGYARKIVGRVLSSMQAQSGDSNIENYPDYLLAALVEALALVGTVK
        AGGTNFYTVDGLKKQGLFQSTSTRK         DLMNKELSSSLHALIGGIAYGGYARKIVGRVLSSMQAQSGDSNIE+YPD+LLAALVEALALVGTVK
Subjt:  AGGTNFYTVDGLKKQGLFQSTSTRKSNICLLHLEDLMNKELSSSLHALIGGIAYGGYARKIVGRVLSSMQAQSGDSNIENYPDYLLAALVEALALVGTVK

Query:  CYDPSLISSAKVNNSLSL
        CYDPSLISSAK NNSLSL
Subjt:  CYDPSLISSAKVNNSLSL

TrEMBL top hitse value%identityAlignment
A0A1S3C7S6 uncharacterized protein LOC103497790 isoform X12.3e-9084.36Show/hide
Query:  EIHTNGRQTTPFQELWDKLGDSSKYLRLVAVSLPNIG-DLTISTMKTMFSIMESQLRCSNLWQLDGRPMSGDIGRGATRETIAFAAQLALSNDRPPGFLQ
        EIHTNGRQTT FQELWDKLGDSSKYLRLVAVSLPNIG DLT+STMKTMFSIMESQL C NLWQLDGRPMSGDIGRGATRETIAFAAQLA +NDRPPGFLQ
Subjt:  EIHTNGRQTTPFQELWDKLGDSSKYLRLVAVSLPNIG-DLTISTMKTMFSIMESQLRCSNLWQLDGRPMSGDIGRGATRETIAFAAQLALSNDRPPGFLQ

Query:  LAGGTNFYTVDGLKKQGLFQSTSTRKSNICLLHLEDLMNKELSSSLHALIGGIAYGGYARKIVGRVLSSMQAQSGDSNIENYPDYLLAALVEALALVGTV
        LAGGTNF+TVDGLKK+ LFQSTS          +E+  N+ELSSSL+ALIGGIAYGGYARKIVGRVLSSMQ Q+GD+NIE+YPD LLAALVEAL LVGTV
Subjt:  LAGGTNFYTVDGLKKQGLFQSTSTRKSNICLLHLEDLMNKELSSSLHALIGGIAYGGYARKIVGRVLSSMQAQSGDSNIENYPDYLLAALVEALALVGTV

Query:  KCYDPSLISSA
        KCYDPS ISSA
Subjt:  KCYDPSLISSA

A0A5D3BV06 Uncharacterized protein2.3e-9084.36Show/hide
Query:  EIHTNGRQTTPFQELWDKLGDSSKYLRLVAVSLPNIG-DLTISTMKTMFSIMESQLRCSNLWQLDGRPMSGDIGRGATRETIAFAAQLALSNDRPPGFLQ
        EIHTNGRQTT FQELWDKLGDSSKYLRLVAVSLPNIG DLT+STMKTMFSIMESQL C NLWQLDGRPMSGDIGRGATRETIAFAAQLA +NDRPPGFLQ
Subjt:  EIHTNGRQTTPFQELWDKLGDSSKYLRLVAVSLPNIG-DLTISTMKTMFSIMESQLRCSNLWQLDGRPMSGDIGRGATRETIAFAAQLALSNDRPPGFLQ

Query:  LAGGTNFYTVDGLKKQGLFQSTSTRKSNICLLHLEDLMNKELSSSLHALIGGIAYGGYARKIVGRVLSSMQAQSGDSNIENYPDYLLAALVEALALVGTV
        LAGGTNF+TVDGLKK+ LFQSTS          +E+  N+ELSSSL+ALIGGIAYGGYARKIVGRVLSSMQ Q+GD+NIE+YPD LLAALVEAL LVGTV
Subjt:  LAGGTNFYTVDGLKKQGLFQSTSTRKSNICLLHLEDLMNKELSSSLHALIGGIAYGGYARKIVGRVLSSMQAQSGDSNIENYPDYLLAALVEALALVGTV

Query:  KCYDPSLISSA
        KCYDPS ISSA
Subjt:  KCYDPSLISSA

A0A6J1CA44 uncharacterized protein LOC1110096021.0e-9382.57Show/hide
Query:  EIHTNGRQTTPFQELWDKLGDSSKYLRLVAVSLPNIGDLTISTMKTMFSIMESQLRCSNLWQLDGRPMSGDIGRGATRETIAFAAQLALSNDRPPGFLQL
        EIHTNGRQTTPFQE WD+LGD+SKYLRLVAVSLPNIGDLT+STMKTM+SIMES+L CSNLWQLDGRPMSGDIG+GATRETIAF+AQLALSNDRPPGFLQL
Subjt:  EIHTNGRQTTPFQELWDKLGDSSKYLRLVAVSLPNIGDLTISTMKTMFSIMESQLRCSNLWQLDGRPMSGDIGRGATRETIAFAAQLALSNDRPPGFLQL

Query:  AGGTNFYTVDGLKKQGLFQSTSTRKSNICLLHLEDLMNKEL----SSSLHALIGGIAYGGYARKIVGRVLSSMQAQSGDSNIENYPDYLLAALVEALALV
        AGGTN +TVDGLKK+ LFQSTST  +         LMN+EL    SSS+HALIGGIAYGGYARKIVGRVLSSMQ Q+GD+NIENYPDYLLAAL EALALV
Subjt:  AGGTNFYTVDGLKKQGLFQSTSTRKSNICLLHLEDLMNKEL----SSSLHALIGGIAYGGYARKIVGRVLSSMQAQSGDSNIENYPDYLLAALVEALALV

Query:  GTVKCYDPSLISSAKVNN
        GTVKCYDPSL+SSAKV +
Subjt:  GTVKCYDPSLISSAKVNN

A0A6J1H6Q4 uncharacterized protein LOC1114601211.0e-10995.87Show/hide
Query:  EIHTNGRQTTPFQELWDKLGDSSKYLRLVAVSLPNIGDLTISTMKTMFSIMESQLRCSNLWQLDGRPMSGDIGRGATRETIAFAAQLALSNDRPPGFLQL
        EIHTNGRQTTPFQELWDKLGDSSKYLRLVAVSLPNIGDLTISTMKTMFSIMESQLRCSNLWQLDGRPMSGDIGRGATRETIAFAAQLALSNDRPPGFLQL
Subjt:  EIHTNGRQTTPFQELWDKLGDSSKYLRLVAVSLPNIGDLTISTMKTMFSIMESQLRCSNLWQLDGRPMSGDIGRGATRETIAFAAQLALSNDRPPGFLQL

Query:  AGGTNFYTVDGLKKQGLFQSTSTRKSNICLLHLEDLMNKELSSSLHALIGGIAYGGYARKIVGRVLSSMQAQSGDSNIENYPDYLLAALVEALALVGTVK
        AGGTNFYTVDGLKKQGLFQSTSTRK         DLMNKELSSSLHALIGGIAYGGYARKIVGRVLSSMQAQSGDSNIENYPDYLLAALVEALALVGTVK
Subjt:  AGGTNFYTVDGLKKQGLFQSTSTRKSNICLLHLEDLMNKELSSSLHALIGGIAYGGYARKIVGRVLSSMQAQSGDSNIENYPDYLLAALVEALALVGTVK

Query:  CYDPSLISSAKVNNSLSL
        CYDPSLISSAKVNNSLSL
Subjt:  CYDPSLISSAKVNNSLSL

A0A6J1KVU8 uncharacterized protein LOC111499161 isoform X11.2e-10290.83Show/hide
Query:  EIHTNGRQTTPFQELWDKLGDSSKYLRLVAVSLPNIGDLTISTMKTMFSIMESQLRCSNLWQLDGRPMSGDIGRGATRETIAFAAQLALSNDRPPGFLQL
        EIHTNGRQTTPFQELW+KLGDSSKYLRLVAVSLPNIGDLTISTMKTMFSIMESQLRC NLWQLDGRPMSGDIGRGATRETIAFAAQLALSNDRPPGFLQL
Subjt:  EIHTNGRQTTPFQELWDKLGDSSKYLRLVAVSLPNIGDLTISTMKTMFSIMESQLRCSNLWQLDGRPMSGDIGRGATRETIAFAAQLALSNDRPPGFLQL

Query:  AGGTNFYTVDGLKKQGLFQSTSTRKSNICLLHLEDLMNKELSSSLHALIGGIAYGGYARKIVGRVLSSMQAQSGDSNIENYPDYLLAALVEALALVGTVK
        AGGTNFYTVDGLKKQGLFQS             +DLM+KELSSSLHALIGGIAYGGYARKIVGRVLSSMQAQSGDSNIE+YPDYLLAALVEAL LVGTVK
Subjt:  AGGTNFYTVDGLKKQGLFQSTSTRKSNICLLHLEDLMNKELSSSLHALIGGIAYGGYARKIVGRVLSSMQAQSGDSNIENYPDYLLAALVEALALVGTVK

Query:  CYDPSLISSAKVNNSLSL
         YDPSLISSAKVNNSLSL
Subjt:  CYDPSLISSAKVNNSLSL

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAAGAGATTCACACCAATGGAAGGCAAACCACTCCTTTTCAAGAACTATGGGATAAATTAGGGGACTCATCCAAATATCTAAGGCTTGTTGCAGTAAGCCTGCCCAA
TATTGGCGATTTAACAATATCTACAATGAAAACGATGTTCTCGATCATGGAATCACAGCTCCGTTGTTCGAACTTATGGCAGTTAGACGGTCGGCCGATGAGTGGAGATA
TCGGACGAGGCGCTACAAGGGAAACTATTGCTTTCGCTGCTCAGTTAGCTCTTTCCAATGACCGTCCTCCTGGCTTCCTTCAACTGGCTGGTGGTACAAATTTCTACACT
GTTGATGGCTTGAAGAAACAGGGACTTTTTCAATCCACATCAACTCGTAAATCAAATATTTGTCTGCTACATTTAGAGGATTTGATGAACAAAGAGCTATCAAGTTCATT
GCACGCGTTGATTGGCGGTATTGCTTATGGGGGCTATGCCCGAAAAATAGTTGGAAGGGTCTTGAGTTCAATGCAAGCACAAAGTGGAGATTCCAATATTGAAAACTACC
CGGACTATCTCTTGGCTGCACTTGTGGAAGCCTTGGCTTTGGTGGGAACAGTCAAATGCTATGATCCTTCTCTTATCAGCTCAGCAAAAGTTAACAACTCCTTAAGTTTG
TAG
mRNA sequenceShow/hide mRNA sequence
TCTAGCGGTTGCGGCAGGAAGAATCAATATCAAAATGGCTTTGAGCTTGTCCTGCCATGCCGCGCTTCGCCTTCAACATCAAGTGGCTTCCGGAAACCACAGCAACAAGA
ACCTCGACAATGTAAGACGTCTCGTAAATCGAATTGGAATTGCTTCAGTTCAATCTTCTCCTCTTGAATCGCTTCGAGATGGCAACTGGATCAAGCTTATTTGCGGTGCA
AGTTTCGAGGATGTGGTTGATATTAGGAATCTCTCTCTTGTTTACACACTTGCTGGTGTTGATTGTATTGACTGTGCTGCTGATGCCTCGGTTGTTAGTGCTGTGAATGA
GGGAATTCAAGCGGCAAGGGATATCGTTGACGTTCGCAGGCCGTGGGTGATGATTAGTGTCAATGATGTCCAAGATCTTCACTTCCGCAAAGCTGAGTTTGATCCTGAGA
ATTGTCCACTTGACTGTTCAAGGCCTTGCGAAATTGTTTGCCCTGCTAATGCAATTTCACTACGGGAAGAAATAATGAACGAGCCTTCTGAAGTGGCCAGTTTGTCTGGA
GCATTGAAGGGCGGAGTTATCACAGAGCGATGTTACGGTTGCGGCCGCTGCTCTCCAGTCTGCCCATATGATAAAATAAATCTAGTCACATATGTAAGGGATGCAGCTAC
TACTGCTAAACTTATAAAACGGGGCGACGTCGATGCTTTAGAGATTCACACCAATGGAAGAGATTCACACCAATGGAAGGCAAACCACTCCTTTTCAAGAACTATGGGAT
AAATTAGGGGACTCATCCAAATATCTAAGGCTTGTTGCAGTAAGCCTGCCCAATATTGGCGATTTAACAATATCTACAATGAAAACGATGTTCTCGATCATGGAATCACA
GCTCCGTTGTTCGAACTTATGGCAGTTAGACGGTCGGCCGATGAGTGGAGATATCGGACGAGGCGCTACAAGGGAAACTATTGCTTTCGCTGCTCAGTTAGCTCTTTCCA
ATGACCGTCCTCCTGGCTTCCTTCAACTGGCTGGTGGTACAAATTTCTACACTGTTGATGGCTTGAAGAAACAGGGACTTTTTCAATCCACATCAACTCGTAAATCAAAT
ATTTGTCTGCTACATTTAGAGGATTTGATGAACAAAGAGCTATCAAGTTCATTGCACGCGTTGATTGGCGGTATTGCTTATGGGGGCTATGCCCGAAAAATAGTTGGAAG
GGTCTTGAGTTCAATGCAAGCACAAAGTGGAGATTCCAATATTGAAAACTACCCGGACTATCTCTTGGCTGCACTTGTGGAAGCCTTGGCTTTGGTGGGAACAGTCAAAT
GCTATGATCCTTCTCTTATCAGCTCAGCAAAAGTTAACAACTCCTTAAGTTTGTAGTTCATTTCAAACCACACGTCGGATACTTTTGTTGTCATATCTGTCCGTTTCGTG
TTGAAGTACATTTTCTTGTCGACTACTTCGGTAAACAAGCTCGAGACAAGAAGACGGAGACCATGGAAGATCAATTGAAGCAACAACCACAGAGCATGCTTAGAATTCCG
AGAGAACGTCAAAGTCCAAGCCTCACTCTAATACCAACAATTGGAAGCTTTGTTCATAATGATGTAGCTTTAGAGATTAGTTTGAAGAATACAACATTTTAACTGAATTA
AATTTACTGTGGTGAAATAGGGTGGGAGAAATGACATTATGTGGAATAAAAGTGGAGAATTTTCACCTTTTTG
Protein sequenceShow/hide protein sequence
MEEIHTNGRQTTPFQELWDKLGDSSKYLRLVAVSLPNIGDLTISTMKTMFSIMESQLRCSNLWQLDGRPMSGDIGRGATRETIAFAAQLALSNDRPPGFLQLAGGTNFYT
VDGLKKQGLFQSTSTRKSNICLLHLEDLMNKELSSSLHALIGGIAYGGYARKIVGRVLSSMQAQSGDSNIENYPDYLLAALVEALALVGTVKCYDPSLISSAKVNNSLSL