; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

CmoCh17G003630 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh17G003630
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
Descriptionprotein SINE3
Genome locationCmo_Chr17:2229797..2231580
RNA-Seq ExpressionCmoCh17G003630
SyntenyCmoCh17G003630
Gene Ontology termsGO:0016021 - integral component of membrane (cellular component)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6575120.1 hypothetical protein SDJN03_25759, partial [Cucurbita argyrosperma subsp. sororia]1.0e-9186.94Show/hide
Query:  MERRMKDSQTPQRDQAANRRSRKPLK------------------RSSKQDFSSISVVSDVNQIPDIDR-----SFLHDVNPALSACCGSSLIPDLSPSSV
        ME+RMKDSQTPQRDQAANRRSRKPLK                  +SSKQDFS ISVVSDVNQIPDIDR     S+LHDVNPALSACCGSSLIPDLSPSSV
Subjt:  MERRMKDSQTPQRDQAANRRSRKPLK------------------RSSKQDFSSISVVSDVNQIPDIDR-----SFLHDVNPALSACCGSSLIPDLSPSSV

Query:  VTFDNGQLDKVPVNFSGSNDLDETGAGSVGAEIAVSSLSRALTQVLQSTDVDHQAKKLIDASIRIIVDDFLAIPQDRDHIFQIISAKNQVLSISLFLWII
        VTFDNGQLDKVPVNFSGSNDLDETGAGSVGAEIAV+SLSRALTQVLQSTDVDHQAKKLIDASIRIIVDDFLAIPQDRDHIFQ+ISAKNQVLSISLFLWII
Subjt:  VTFDNGQLDKVPVNFSGSNDLDETGAGSVGAEIAVSSLSRALTQVLQSTDVDHQAKKLIDASIRIIVDDFLAIPQDRDHIFQIISAKNQVLSISLFLWII

Query:  VLALAFFFNSEVKSSFIGPLPT
        VLALAFFFNSEVKSSFIGPLPT
Subjt:  VLALAFFFNSEVKSSFIGPLPT

XP_022959315.1 uncharacterized protein LOC111460327 isoform X1 [Cucurbita moschata]7.0e-9691.71Show/hide
Query:  MERRMKDSQTPQRDQAANRRSRKPLK------------------RSSKQDFSSISVVSDVNQIPDIDRSFLHDVNPALSACCGSSLIPDLSPSSVVTFDN
        MERRMKDSQTPQRDQAANRRSRKPLK                  RSSKQDFSSISVVSDVNQIPDIDRSFLHDVNPALSACCGSSLIPDLSPSSVVTFDN
Subjt:  MERRMKDSQTPQRDQAANRRSRKPLK------------------RSSKQDFSSISVVSDVNQIPDIDRSFLHDVNPALSACCGSSLIPDLSPSSVVTFDN

Query:  GQLDKVPVNFSGSNDLDETGAGSVGAEIAVSSLSRALTQVLQSTDVDHQAKKLIDASIRIIVDDFLAIPQDRDHIFQIISAKNQVLSISLFLWIIVLALA
        GQLDKVPVNFSGSNDLDETGAGSVGAEIAVSSLSRALTQVLQSTDVDHQAKKLIDASIRIIVDDFLAIPQDRDHIFQIISAKNQVLSISLFLWIIVLALA
Subjt:  GQLDKVPVNFSGSNDLDETGAGSVGAEIAVSSLSRALTQVLQSTDVDHQAKKLIDASIRIIVDDFLAIPQDRDHIFQIISAKNQVLSISLFLWIIVLALA

Query:  FFFNSEVKSSFIGPLPT
        FFFNSEVKSSFIGPLPT
Subjt:  FFFNSEVKSSFIGPLPT

XP_022959316.1 uncharacterized protein LOC111460327 isoform X2 [Cucurbita moschata]5.7e-9095.85Show/hide
Query:  MERRMKDSQTPQRDQAANRRSRKPLKRSSKQDFSSISVVSDVNQIPDIDRSFLHDVNPALSACCGSSLIPDLSPSSVVTFDNGQLDKVPVNFSGSNDLDE
        MERRMKDSQTPQRDQAANRRSRKPLKRSSKQDFSSISVVSDVNQIPDIDRSFLHDVNPALSACCGSSLIPDLSPSSVVTFDNGQLDKVPVNFSGSNDLDE
Subjt:  MERRMKDSQTPQRDQAANRRSRKPLKRSSKQDFSSISVVSDVNQIPDIDRSFLHDVNPALSACCGSSLIPDLSPSSVVTFDNGQLDKVPVNFSGSNDLDE

Query:  TGAGSVGAEIAVSSLSRALTQVLQSTDVDHQAKKLIDASIRIIVDDFLAIPQDRDHIFQIISAKNQVLSISLFLWIIVLALAFFFNSEVKSSF
        TGAGSVGAEIAVSSLSRALTQVLQSTDVDHQAKKLIDASIRIIVDDFLAIPQDRDHIFQIISAKNQVLSISLFLWIIVLALAF  +  V  +F
Subjt:  TGAGSVGAEIAVSSLSRALTQVLQSTDVDHQAKKLIDASIRIIVDDFLAIPQDRDHIFQIISAKNQVLSISLFLWIIVLALAFFFNSEVKSSF

XP_023548463.1 uncharacterized protein LOC111807117 [Cucurbita pepo subsp. pepo]3.2e-9393.97Show/hide
Query:  MERRMKDSQTPQRDQAANRRSRKPLKRSSKQDFSSISVVSDVNQIPDIDRSFLHDVNPALSACCGSSLIPDLSPSSVVTFDNGQLDKVPVNFSGSNDLDE
        ME+RMKDSQTPQRDQAANRRSRKPLK+SSKQDFSSISVVSDVNQIPDIDR  LHDVNPALSACCGSSLIPDLSPSS+VTFDNGQLDKVPVNFSGSNDLDE
Subjt:  MERRMKDSQTPQRDQAANRRSRKPLKRSSKQDFSSISVVSDVNQIPDIDRSFLHDVNPALSACCGSSLIPDLSPSSVVTFDNGQLDKVPVNFSGSNDLDE

Query:  TGAGSVGAEIAVSSLSRALTQVLQSTDVDHQAKKLIDASIRIIVDDFLAIPQDRDHIFQIISAKNQVLSISLFLWIIVLALAFFFNSEVKSSFIGPLPT
        + AGSVGAEIAV+SLSRALTQVLQSTDVDHQAKKLIDASIRIIVDDFLAIPQDRD IFQ+ISAK+QVLSISLFLWIIVLALAFFF+SEVKSSFIGPLPT
Subjt:  TGAGSVGAEIAVSSLSRALTQVLQSTDVDHQAKKLIDASIRIIVDDFLAIPQDRDHIFQIISAKNQVLSISLFLWIIVLALAFFFNSEVKSSFIGPLPT

XP_038876305.1 uncharacterized protein LOC120068561 [Benincasa hispida]1.9e-6970.05Show/hide
Query:  MERRMKDSQTPQRDQAANRRSRKPLKRS------------------SKQDFSSISVVSDVNQIPDIDRSFLHDVNPALSACCGSSLIPDLSPSSVVTFDN
        ME++MKD QTPQRDQ ANRRSRKP K +                  SK+DFS ISVV+D+NQIPDID +FL  VNPA SA C +SL  DLSPSSVV+FDN
Subjt:  MERRMKDSQTPQRDQAANRRSRKPLKRS------------------SKQDFSSISVVSDVNQIPDIDRSFLHDVNPALSACCGSSLIPDLSPSSVVTFDN

Query:  GQLDKVPVNFSGSNDLDETGAGSVGAEIAVSSLSRALTQVLQSTDVDHQAKKLIDASIRIIVDDFLAIPQDRDHIFQIISAKNQVLSISLFLWIIVLALA
         QLDKVPVNFSGSND+DE  AGSV  +IAV+SL RALTQVLQSTDVDHQ+KKLIDAS+ IIVDDFLAIPQ+RD I Q+IS KN VLS+ +FLWIIVLA+A
Subjt:  GQLDKVPVNFSGSNDLDETGAGSVGAEIAVSSLSRALTQVLQSTDVDHQAKKLIDASIRIIVDDFLAIPQDRDHIFQIISAKNQVLSISLFLWIIVLALA

Query:  FFFNSEVKSSFIGPLPT
        FF  S VKSSFIGPLPT
Subjt:  FFFNSEVKSSFIGPLPT

TrEMBL top hitse value%identityAlignment
A0A6J1EQ83 uncharacterized protein LOC1114368229.6e-6768.2Show/hide
Query:  MERRMKDSQTPQRDQAANRRSRKPLKRSS------------------KQDFSSISVVSDVNQIPDIDRSFLHDVNPALSACCGSSLIPDLSPSSVVTFDN
        ME+R K+ QTP RDQAANRRS+KPLK +                   K+DFS ISVVS+++QIPDID SFL DVNPALS  C SSL P+LSPSSVVTFDN
Subjt:  MERRMKDSQTPQRDQAANRRSRKPLKRSS------------------KQDFSSISVVSDVNQIPDIDRSFLHDVNPALSACCGSSLIPDLSPSSVVTFDN

Query:  GQLDKVPVNFSGSNDLDETGAGSVGAEIAVSSLSRALTQVLQSTDVDHQAKKLIDASIRIIVDDFLAIPQDRDHIFQIISAKNQVLSISLFLWIIVLALA
         QLDKVPVNF GSN+LDE  AGSV AEIAV+ L RAL+QVLQSTDVDHQ+KKLIDAS+RIIVD+FLAIPQ+RD I ++IS+K+ VLS+ LFLWIIVL LA
Subjt:  GQLDKVPVNFSGSNDLDETGAGSVGAEIAVSSLSRALTQVLQSTDVDHQAKKLIDASIRIIVDDFLAIPQDRDHIFQIISAKNQVLSISLFLWIIVLALA

Query:  FFFNSEVKSSFIGPLPT
        FF  S V++ FIGPLPT
Subjt:  FFFNSEVKSSFIGPLPT

A0A6J1H4I4 uncharacterized protein LOC111460327 isoform X22.8e-9095.85Show/hide
Query:  MERRMKDSQTPQRDQAANRRSRKPLKRSSKQDFSSISVVSDVNQIPDIDRSFLHDVNPALSACCGSSLIPDLSPSSVVTFDNGQLDKVPVNFSGSNDLDE
        MERRMKDSQTPQRDQAANRRSRKPLKRSSKQDFSSISVVSDVNQIPDIDRSFLHDVNPALSACCGSSLIPDLSPSSVVTFDNGQLDKVPVNFSGSNDLDE
Subjt:  MERRMKDSQTPQRDQAANRRSRKPLKRSSKQDFSSISVVSDVNQIPDIDRSFLHDVNPALSACCGSSLIPDLSPSSVVTFDNGQLDKVPVNFSGSNDLDE

Query:  TGAGSVGAEIAVSSLSRALTQVLQSTDVDHQAKKLIDASIRIIVDDFLAIPQDRDHIFQIISAKNQVLSISLFLWIIVLALAFFFNSEVKSSF
        TGAGSVGAEIAVSSLSRALTQVLQSTDVDHQAKKLIDASIRIIVDDFLAIPQDRDHIFQIISAKNQVLSISLFLWIIVLALAF  +  V  +F
Subjt:  TGAGSVGAEIAVSSLSRALTQVLQSTDVDHQAKKLIDASIRIIVDDFLAIPQDRDHIFQIISAKNQVLSISLFLWIIVLALAFFFNSEVKSSF

A0A6J1H5Y6 uncharacterized protein LOC111460327 isoform X13.4e-9691.71Show/hide
Query:  MERRMKDSQTPQRDQAANRRSRKPLK------------------RSSKQDFSSISVVSDVNQIPDIDRSFLHDVNPALSACCGSSLIPDLSPSSVVTFDN
        MERRMKDSQTPQRDQAANRRSRKPLK                  RSSKQDFSSISVVSDVNQIPDIDRSFLHDVNPALSACCGSSLIPDLSPSSVVTFDN
Subjt:  MERRMKDSQTPQRDQAANRRSRKPLK------------------RSSKQDFSSISVVSDVNQIPDIDRSFLHDVNPALSACCGSSLIPDLSPSSVVTFDN

Query:  GQLDKVPVNFSGSNDLDETGAGSVGAEIAVSSLSRALTQVLQSTDVDHQAKKLIDASIRIIVDDFLAIPQDRDHIFQIISAKNQVLSISLFLWIIVLALA
        GQLDKVPVNFSGSNDLDETGAGSVGAEIAVSSLSRALTQVLQSTDVDHQAKKLIDASIRIIVDDFLAIPQDRDHIFQIISAKNQVLSISLFLWIIVLALA
Subjt:  GQLDKVPVNFSGSNDLDETGAGSVGAEIAVSSLSRALTQVLQSTDVDHQAKKLIDASIRIIVDDFLAIPQDRDHIFQIISAKNQVLSISLFLWIIVLALA

Query:  FFFNSEVKSSFIGPLPT
        FFFNSEVKSSFIGPLPT
Subjt:  FFFNSEVKSSFIGPLPT

A0A6J1KL67 uncharacterized protein LOC1114942864.8e-6668.2Show/hide
Query:  MERRMKDSQTPQRDQAANRRSRKPLKRSS------------------KQDFSSISVVSDVNQIPDIDRSFLHDVNPALSACCGSSLIPDLSPSSVVTFDN
        ME+R K+ QTP RDQAANRRS+KPLK +                   K+DFS ISVVS+++QIPDID SFL DVNPALS  C SSL P+LSPSSVVTFDN
Subjt:  MERRMKDSQTPQRDQAANRRSRKPLKRSS------------------KQDFSSISVVSDVNQIPDIDRSFLHDVNPALSACCGSSLIPDLSPSSVVTFDN

Query:  GQLDKVPVNFSGSNDLDETGAGSVGAEIAVSSLSRALTQVLQSTDVDHQAKKLIDASIRIIVDDFLAIPQDRDHIFQIISAKNQVLSISLFLWIIVLALA
         QLDKVPVNF  SN+LDE  AGSV AEIAV+ L RAL QVLQSTDVDHQ+KKLIDAS+RIIVDDFLAIPQ+RD I ++IS+K+ VLS+ LFLWIIVL LA
Subjt:  GQLDKVPVNFSGSNDLDETGAGSVGAEIAVSSLSRALTQVLQSTDVDHQAKKLIDASIRIIVDDFLAIPQDRDHIFQIISAKNQVLSISLFLWIIVLALA

Query:  FFFNSEVKSSFIGPLPT
        FF  S V++ FIGPLPT
Subjt:  FFFNSEVKSSFIGPLPT

A0A6J1L4D7 uncharacterized protein LOC1114990371.4e-6291.55Show/hide
Query:  IPDIDRSFLHDVNPALSACCGSSLIPDLSPSSVVTFDNGQLDKVPVNFSGSNDLDETGAGSVGAEIAVSSLSRALTQVLQSTDVDHQAKKLIDASIRIIV
        +PDIDRSFLHDVNPALSACCGSSLIPDLSPSSVVTFDNGQLDKVPVNFSGSNDLDET AGSVGAEIAV+SLSRALTQVLQSTDV HQ+KKLIDASIRIIV
Subjt:  IPDIDRSFLHDVNPALSACCGSSLIPDLSPSSVVTFDNGQLDKVPVNFSGSNDLDETGAGSVGAEIAVSSLSRALTQVLQSTDVDHQAKKLIDASIRIIV

Query:  DDFLAIPQDRDHIFQIISAKNQVLSISLFLWIIVLALAFFFN
        DDF AIPQDRDHIFQ+ISAK+ VLSISLFLWIIVLALAF  +
Subjt:  DDFLAIPQDRDHIFQIISAKNQVLSISLFLWIIVLALAFFFN

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAGAGAAGGATGAAAGACTCCCAAACTCCGCAGAGAGATCAAGCGGCGAATCGTAGATCAAGGAAACCTCTGAAGCGAAGTTCGAAGCAAGACTTCTCTTCGATTTC
TGTTGTCTCAGACGTCAATCAAATTCCAGATATCGATCGAAGTTTCTTGCATGATGTTAATCCGGCTCTTTCTGCTTGCTGCGGGAGCTCGCTTATCCCCGATCTTTCTC
CATCTTCAGTTGTCACTTTTGATAATGGACAGCTTGACAAGGTTCCAGTTAATTTTTCTGGATCTAATGATTTGGATGAAACTGGCGCGGGTTCAGTAGGAGCAGAGATT
GCTGTAAGTTCTTTAAGTCGTGCTCTAACTCAAGTCCTGCAATCCACGGATGTTGATCATCAGGCCAAGAAGCTTATAGATGCATCCATAAGGATCATTGTAGACGATTT
CCTTGCTATACCTCAAGATCGAGACCATATTTTTCAAATTATTTCTGCCAAAAATCAAGTTCTCTCTATATCTTTATTCCTGTGGATCATCGTCTTGGCATTAGCTTTCT
TTTTCAACTCGGAAGTCAAGAGCTCTTTCATCGGGCCATTGCCAACTTAA
mRNA sequenceShow/hide mRNA sequence
CGTATCAAGAATGCCCCCTATAAAAGCAAAAATTTAGTGAGATTGCATACCGTTATTTTATTTGTTTCATATGTTGCACGATATTCCTTGGCGCCAAAGATTAGGTTCAG
AACGTCCGAAAATTTTCCCGCGATATCAAGATGGAGAGAAGGATGAAAGACTCCCAAACTCCGCAGAGAGATCAAGCGGCGAATCGTAGATCAAGGAAACCTCTGAAGCG
AAGTTCGAAGCAAGACTTCTCTTCGATTTCTGTTGTCTCAGACGTCAATCAAATTCCAGATATCGATCGAAGTTTCTTGCATGATGTTAATCCGGCTCTTTCTGCTTGCT
GCGGGAGCTCGCTTATCCCCGATCTTTCTCCATCTTCAGTTGTCACTTTTGATAATGGACAGCTTGACAAGGTTCCAGTTAATTTTTCTGGATCTAATGATTTGGATGAA
ACTGGCGCGGGTTCAGTAGGAGCAGAGATTGCTGTAAGTTCTTTAAGTCGTGCTCTAACTCAAGTCCTGCAATCCACGGATGTTGATCATCAGGCCAAGAAGCTTATAGA
TGCATCCATAAGGATCATTGTAGACGATTTCCTTGCTATACCTCAAGATCGAGACCATATTTTTCAAATTATTTCTGCCAAAAATCAAGTTCTCTCTATATCTTTATTCC
TGTGGATCATCGTCTTGGCATTAGCTTTCTTTTTCAACTCGGAAGTCAAGAGCTCTTTCATCGGGCCATTGCCAACTTAAACTTGCTGTTCGGCATCAGAGCATTGTTGC
ATATCTTTAGCAA
Protein sequenceShow/hide protein sequence
MERRMKDSQTPQRDQAANRRSRKPLKRSSKQDFSSISVVSDVNQIPDIDRSFLHDVNPALSACCGSSLIPDLSPSSVVTFDNGQLDKVPVNFSGSNDLDETGAGSVGAEI
AVSSLSRALTQVLQSTDVDHQAKKLIDASIRIIVDDFLAIPQDRDHIFQIISAKNQVLSISLFLWIIVLALAFFFNSEVKSSFIGPLPT