; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

CmoCh17G003910 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh17G003910
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
DescriptiontRNA pseudouridine synthase
Genome locationCmo_Chr17:2448557..2452285
RNA-Seq ExpressionCmoCh17G003910
SyntenyCmoCh17G003910
Gene Ontology termsGO:0001522 - pseudouridine synthesis (biological process)
GO:0008033 - tRNA processing (biological process)
GO:0034196 - acylglycerol transport (biological process)
GO:1990052 - ER to chloroplast lipid transport (biological process)
GO:0003723 - RNA binding (molecular function)
GO:0070300 - phosphatidic acid binding (molecular function)
GO:0106029 - tRNA pseudouridine synthase activity (molecular function)
InterPro domainsIPR001406 - Pseudouridine synthase I, TruA
IPR020094 - Pseudouridine synthase TruA/RsuA/RluB/E/F, N-terminal
IPR020095 - Pseudouridine synthase I, TruA, C-terminal
IPR020097 - Pseudouridine synthase I, TruA, alpha/beta domain
IPR020103 - Pseudouridine synthase, catalytic domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6575158.1 hypothetical protein SDJN03_25797, partial [Cucurbita argyrosperma subsp. sororia]3.3e-19199.7Show/hide
Query:  MSYWAVGSAVLPSVPRLLSPSIPSRNGDSSPTGRGFPISEDSSCVTEPDFPSFKWRLVIAYDGTRYAGWQYQRSPPTIQCLVEEALTGATRLERKDLHLV
        MSYWAVGSAVLPSVPRLLSPSIPSRNGDSSP GRGFPISEDSSCVTEPDFPSFKWRLVIAYDGTRYAGWQYQRSPPTIQCLVEEALTGATRLERKDLHLV
Subjt:  MSYWAVGSAVLPSVPRLLSPSIPSRNGDSSPTGRGFPISEDSSCVTEPDFPSFKWRLVIAYDGTRYAGWQYQRSPPTIQCLVEEALTGATRLERKDLHLV

Query:  GASRTDTGVHAWGQVAHFITPFNYDSLDRIHAALNGLLPADIRVREMSPAVPDFHARFSTLSKVYHYKIYNDAILDPFQRCYTYHCVYKLNYAAMKEAAN
        GASRTDTGVHAWGQVAHFITPFNYDSLDRIHAALNGLLPADIRVREMSPAVPDFHARFSTLSKVYHYKIYNDAILDPFQRCYTYHCVYKLNYAAMKEAAN
Subjt:  GASRTDTGVHAWGQVAHFITPFNYDSLDRIHAALNGLLPADIRVREMSPAVPDFHARFSTLSKVYHYKIYNDAILDPFQRCYTYHCVYKLNYAAMKEAAN

Query:  YFVGKHDFSAFANTAHNDRVVNPVKVIFRFDVIEMGALIQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATRDRKELAKYTTCIPPQGLCLV
        YFVGKHDFSAFANTAHNDRVVNPVKVIFRFDVIEMGALIQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATRDRKELAKYTTCIPPQGLCLV
Subjt:  YFVGKHDFSAFANTAHNDRVVNPVKVIFRFDVIEMGALIQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATRDRKELAKYTTCIPPQGLCLV

Query:  RINYKEDHLKLPSDCPGTSFGRSHSVSK
        RINYKEDHLKLPSDCPGTSFGRSHSVSK
Subjt:  RINYKEDHLKLPSDCPGTSFGRSHSVSK

KAG7013715.1 truA1, partial [Cucurbita argyrosperma subsp. argyrosperma]2.0e-18897.01Show/hide
Query:  MSYWAVGSAVLPSVPRLLSPSIPSRNGDSSPTGRGFPISEDSSCVTEPDFPSFKWRLVIAYDGTRYAGWQYQRSPPTIQCLVEEALTGATRLERKDLHLV
        MSYWAVGSAVLPSVPRLLSPSIPSRNGDSSPTGRGFPISEDSSCVTEPDFPSFKWRLVIAYDGTRYAGWQYQRSPPTIQCLVEEALTGATRLERKDLHLV
Subjt:  MSYWAVGSAVLPSVPRLLSPSIPSRNGDSSPTGRGFPISEDSSCVTEPDFPSFKWRLVIAYDGTRYAGWQYQRSPPTIQCLVEEALTGATRLERKDLHLV

Query:  GASRTDTGVHAWGQVAHFITPFNYDSLDRIHAALNGLLPADIRVREMSPAVPDFHARFSTLSKVYHYKIYNDAILDPFQRCYTYHCVYKLNYAAMKEAAN
        GASRTDTGVHAWGQVAHFITPFNYDSLDRIHAALNGLLPADIRVREMSPAVPDFHARFSTLSKVYHYKIYNDAILDPFQRCYTYHCVYKLNYAAMKEAAN
Subjt:  GASRTDTGVHAWGQVAHFITPFNYDSLDRIHAALNGLLPADIRVREMSPAVPDFHARFSTLSKVYHYKIYNDAILDPFQRCYTYHCVYKLNYAAMKEAAN

Query:  YFVGKHDFSAFANTAHNDRVVNPVKVIFRFDVIEMGALIQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATRDRKELAKYTTCIPPQGLCLV
        YFVGKHDFSAFANTAHNDRVVNPVK          GALIQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATRDRKELAKYTTCIPPQGLCLV
Subjt:  YFVGKHDFSAFANTAHNDRVVNPVKVIFRFDVIEMGALIQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATRDRKELAKYTTCIPPQGLCLV

Query:  RINYKEDHLKLPSDCPGTSFGRSHSVSKCKLPFY
        RINYKEDHLKLPSDCPGTSFGRSHSVSKCKLPFY
Subjt:  RINYKEDHLKLPSDCPGTSFGRSHSVSKCKLPFY

XP_022959477.1 uncharacterized protein LOC111460439 isoform X1 [Cucurbita moschata]6.4e-19599.4Show/hide
Query:  MSYWAVGSAVLPSVPRLLSPSIPSRNGDSSPTGRGFP--ISEDSSCVTEPDFPSFKWRLVIAYDGTRYAGWQYQRSPPTIQCLVEEALTGATRLERKDLH
        MSYWAVGSAVLPSVPRLLSPSIPSRNGDSSPTGRGFP  ISEDSSCVTEPDFPSFKWRLVIAYDGTRYAGWQYQRSPPTIQCLVEEALTGATRLERKDLH
Subjt:  MSYWAVGSAVLPSVPRLLSPSIPSRNGDSSPTGRGFP--ISEDSSCVTEPDFPSFKWRLVIAYDGTRYAGWQYQRSPPTIQCLVEEALTGATRLERKDLH

Query:  LVGASRTDTGVHAWGQVAHFITPFNYDSLDRIHAALNGLLPADIRVREMSPAVPDFHARFSTLSKVYHYKIYNDAILDPFQRCYTYHCVYKLNYAAMKEA
        LVGASRTDTGVHAWGQVAHFITPFNYDSLDRIHAALNGLLPADIRVREMSPAVPDFHARFSTLSKVYHYKIYNDAILDPFQRCYTYHCVYKLNYAAMKEA
Subjt:  LVGASRTDTGVHAWGQVAHFITPFNYDSLDRIHAALNGLLPADIRVREMSPAVPDFHARFSTLSKVYHYKIYNDAILDPFQRCYTYHCVYKLNYAAMKEA

Query:  ANYFVGKHDFSAFANTAHNDRVVNPVKVIFRFDVIEMGALIQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATRDRKELAKYTTCIPPQGLC
        ANYFVGKHDFSAFANTAHNDRVVNPVKVIFRFDVIEMGALIQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATRDRKELAKYTTCIPPQGLC
Subjt:  ANYFVGKHDFSAFANTAHNDRVVNPVKVIFRFDVIEMGALIQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATRDRKELAKYTTCIPPQGLC

Query:  LVRINYKEDHLKLPSDCPGTSFGRSHSVSKCKLPFY
        LVRINYKEDHLKLPSDCPGTSFGRSHSVSKCKLPFY
Subjt:  LVRINYKEDHLKLPSDCPGTSFGRSHSVSKCKLPFY

XP_022959478.1 uncharacterized protein LOC111460439 isoform X2 [Cucurbita moschata]2.0e-196100Show/hide
Query:  MSYWAVGSAVLPSVPRLLSPSIPSRNGDSSPTGRGFPISEDSSCVTEPDFPSFKWRLVIAYDGTRYAGWQYQRSPPTIQCLVEEALTGATRLERKDLHLV
        MSYWAVGSAVLPSVPRLLSPSIPSRNGDSSPTGRGFPISEDSSCVTEPDFPSFKWRLVIAYDGTRYAGWQYQRSPPTIQCLVEEALTGATRLERKDLHLV
Subjt:  MSYWAVGSAVLPSVPRLLSPSIPSRNGDSSPTGRGFPISEDSSCVTEPDFPSFKWRLVIAYDGTRYAGWQYQRSPPTIQCLVEEALTGATRLERKDLHLV

Query:  GASRTDTGVHAWGQVAHFITPFNYDSLDRIHAALNGLLPADIRVREMSPAVPDFHARFSTLSKVYHYKIYNDAILDPFQRCYTYHCVYKLNYAAMKEAAN
        GASRTDTGVHAWGQVAHFITPFNYDSLDRIHAALNGLLPADIRVREMSPAVPDFHARFSTLSKVYHYKIYNDAILDPFQRCYTYHCVYKLNYAAMKEAAN
Subjt:  GASRTDTGVHAWGQVAHFITPFNYDSLDRIHAALNGLLPADIRVREMSPAVPDFHARFSTLSKVYHYKIYNDAILDPFQRCYTYHCVYKLNYAAMKEAAN

Query:  YFVGKHDFSAFANTAHNDRVVNPVKVIFRFDVIEMGALIQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATRDRKELAKYTTCIPPQGLCLV
        YFVGKHDFSAFANTAHNDRVVNPVKVIFRFDVIEMGALIQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATRDRKELAKYTTCIPPQGLCLV
Subjt:  YFVGKHDFSAFANTAHNDRVVNPVKVIFRFDVIEMGALIQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATRDRKELAKYTTCIPPQGLCLV

Query:  RINYKEDHLKLPSDCPGTSFGRSHSVSKCKLPFY
        RINYKEDHLKLPSDCPGTSFGRSHSVSKCKLPFY
Subjt:  RINYKEDHLKLPSDCPGTSFGRSHSVSKCKLPFY

XP_023549337.1 uncharacterized protein LOC111807720 isoform X4 [Cucurbita pepo subsp. pepo]4.0e-18996.41Show/hide
Query:  MSYWAVGSAVLPSVPRLLSPSIPSRNGDSSPTGRGFPISEDSSCVTEPDFPSFKWRLVIAYDGTRYAGWQYQRSPPTIQCLVEEALTGATRLERKDLHLV
        MS WAVGSAVLPSVPR LSP IPSRNGDS  TGRGFPISEDSSCVTEPDFPSFKWRLV+AYDGTRYAGWQYQRSPPTIQCL+EEALTGATRLERKDLHLV
Subjt:  MSYWAVGSAVLPSVPRLLSPSIPSRNGDSSPTGRGFPISEDSSCVTEPDFPSFKWRLVIAYDGTRYAGWQYQRSPPTIQCLVEEALTGATRLERKDLHLV

Query:  GASRTDTGVHAWGQVAHFITPFNYDSLDRIHAALNGLLPADIRVREMSPAVPDFHARFSTLSKVYHYKIYNDAILDPFQRCYTYHCVYKLNYAAMKEAAN
        GASRTDTGVHAWGQVAHFITPFNYDSLDRIHAALNGLLPADIRVRE+SPAVPDFHARFSTLSKVYHYKIYNDAILDPFQRCYTYHCVYKLNYAAMKEAAN
Subjt:  GASRTDTGVHAWGQVAHFITPFNYDSLDRIHAALNGLLPADIRVREMSPAVPDFHARFSTLSKVYHYKIYNDAILDPFQRCYTYHCVYKLNYAAMKEAAN

Query:  YFVGKHDFSAFANTAHNDRVVNPVKVIFRFDVIEMGALIQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATRDRKELAKYTTCIPPQGLCLV
        YFVGKHDFSAFAN AHNDRVVNPVKV+FRFDVIEMGALIQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPD+VPKILATRDRKELAKYTTCIPP GLCLV
Subjt:  YFVGKHDFSAFANTAHNDRVVNPVKVIFRFDVIEMGALIQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATRDRKELAKYTTCIPPQGLCLV

Query:  RINYKEDHLKLPSDCPGTSFGRSHSVSKCKLPFY
        RINYKEDHLKLPSDCPGTSFGRSHSVSKCKLPFY
Subjt:  RINYKEDHLKLPSDCPGTSFGRSHSVSKCKLPFY

TrEMBL top hitse value%identityAlignment
A0A6J1H4M7 tRNA pseudouridine synthase3.1e-19599.4Show/hide
Query:  MSYWAVGSAVLPSVPRLLSPSIPSRNGDSSPTGRGFP--ISEDSSCVTEPDFPSFKWRLVIAYDGTRYAGWQYQRSPPTIQCLVEEALTGATRLERKDLH
        MSYWAVGSAVLPSVPRLLSPSIPSRNGDSSPTGRGFP  ISEDSSCVTEPDFPSFKWRLVIAYDGTRYAGWQYQRSPPTIQCLVEEALTGATRLERKDLH
Subjt:  MSYWAVGSAVLPSVPRLLSPSIPSRNGDSSPTGRGFP--ISEDSSCVTEPDFPSFKWRLVIAYDGTRYAGWQYQRSPPTIQCLVEEALTGATRLERKDLH

Query:  LVGASRTDTGVHAWGQVAHFITPFNYDSLDRIHAALNGLLPADIRVREMSPAVPDFHARFSTLSKVYHYKIYNDAILDPFQRCYTYHCVYKLNYAAMKEA
        LVGASRTDTGVHAWGQVAHFITPFNYDSLDRIHAALNGLLPADIRVREMSPAVPDFHARFSTLSKVYHYKIYNDAILDPFQRCYTYHCVYKLNYAAMKEA
Subjt:  LVGASRTDTGVHAWGQVAHFITPFNYDSLDRIHAALNGLLPADIRVREMSPAVPDFHARFSTLSKVYHYKIYNDAILDPFQRCYTYHCVYKLNYAAMKEA

Query:  ANYFVGKHDFSAFANTAHNDRVVNPVKVIFRFDVIEMGALIQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATRDRKELAKYTTCIPPQGLC
        ANYFVGKHDFSAFANTAHNDRVVNPVKVIFRFDVIEMGALIQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATRDRKELAKYTTCIPPQGLC
Subjt:  ANYFVGKHDFSAFANTAHNDRVVNPVKVIFRFDVIEMGALIQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATRDRKELAKYTTCIPPQGLC

Query:  LVRINYKEDHLKLPSDCPGTSFGRSHSVSKCKLPFY
        LVRINYKEDHLKLPSDCPGTSFGRSHSVSKCKLPFY
Subjt:  LVRINYKEDHLKLPSDCPGTSFGRSHSVSKCKLPFY

A0A6J1H621 tRNA pseudouridine synthase9.7e-197100Show/hide
Query:  MSYWAVGSAVLPSVPRLLSPSIPSRNGDSSPTGRGFPISEDSSCVTEPDFPSFKWRLVIAYDGTRYAGWQYQRSPPTIQCLVEEALTGATRLERKDLHLV
        MSYWAVGSAVLPSVPRLLSPSIPSRNGDSSPTGRGFPISEDSSCVTEPDFPSFKWRLVIAYDGTRYAGWQYQRSPPTIQCLVEEALTGATRLERKDLHLV
Subjt:  MSYWAVGSAVLPSVPRLLSPSIPSRNGDSSPTGRGFPISEDSSCVTEPDFPSFKWRLVIAYDGTRYAGWQYQRSPPTIQCLVEEALTGATRLERKDLHLV

Query:  GASRTDTGVHAWGQVAHFITPFNYDSLDRIHAALNGLLPADIRVREMSPAVPDFHARFSTLSKVYHYKIYNDAILDPFQRCYTYHCVYKLNYAAMKEAAN
        GASRTDTGVHAWGQVAHFITPFNYDSLDRIHAALNGLLPADIRVREMSPAVPDFHARFSTLSKVYHYKIYNDAILDPFQRCYTYHCVYKLNYAAMKEAAN
Subjt:  GASRTDTGVHAWGQVAHFITPFNYDSLDRIHAALNGLLPADIRVREMSPAVPDFHARFSTLSKVYHYKIYNDAILDPFQRCYTYHCVYKLNYAAMKEAAN

Query:  YFVGKHDFSAFANTAHNDRVVNPVKVIFRFDVIEMGALIQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATRDRKELAKYTTCIPPQGLCLV
        YFVGKHDFSAFANTAHNDRVVNPVKVIFRFDVIEMGALIQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATRDRKELAKYTTCIPPQGLCLV
Subjt:  YFVGKHDFSAFANTAHNDRVVNPVKVIFRFDVIEMGALIQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATRDRKELAKYTTCIPPQGLCLV

Query:  RINYKEDHLKLPSDCPGTSFGRSHSVSKCKLPFY
        RINYKEDHLKLPSDCPGTSFGRSHSVSKCKLPFY
Subjt:  RINYKEDHLKLPSDCPGTSFGRSHSVSKCKLPFY

A0A6J1H863 tRNA pseudouridine synthase3.1e-17993.15Show/hide
Query:  MSYWAVGSAVLPSVPRLLSPSIPSRNGDSSPTGRGFP--ISEDSSCVTEPDFPSFKWRLVIAYDGTRYAGWQYQRSPPTIQCLVEEALTGATRLERKDLH
        MSYWAVGSAVLPSVPRLLSPSIPSRNGDSSPTGRGFP  ISEDSSCVTEPDFPSFKWRLVIAYDGTRYAGWQYQRSPPTIQCLVEEALTGATRLERKDLH
Subjt:  MSYWAVGSAVLPSVPRLLSPSIPSRNGDSSPTGRGFP--ISEDSSCVTEPDFPSFKWRLVIAYDGTRYAGWQYQRSPPTIQCLVEEALTGATRLERKDLH

Query:  LVGASRTDTGVHAWGQVAHFITPFNYDSLDRIHAALNGLLPADIRVREMSPAVPDFHARFSTLSKVYHYKIYNDAILDPFQRCYTYHCVYKLNYAAMKEA
        LVGASRTDTGVHAWGQVAHFITPFNYDSLDRIHAALNGLLPADIRVREMSPAVPDFHARFSTLSKVYHYKIYNDAILDPFQRCYTYHCVYKLNYAAMKEA
Subjt:  LVGASRTDTGVHAWGQVAHFITPFNYDSLDRIHAALNGLLPADIRVREMSPAVPDFHARFSTLSKVYHYKIYNDAILDPFQRCYTYHCVYKLNYAAMKEA

Query:  ANYFVGKHDFSAFANTAHNDRVVNPVKVIFRFDVIEMGALIQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATRDRKELAKYTTCIPPQGLC
        ANYFVGKHDFSAFANTAHNDRVVNPVKVIFRFDVIE                     MVALLLQIGKEAIPPDIVPKILATRDRKELAKYTTCIPPQGLC
Subjt:  ANYFVGKHDFSAFANTAHNDRVVNPVKVIFRFDVIEMGALIQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATRDRKELAKYTTCIPPQGLC

Query:  LVRINYKEDHLKLPSDCPGTSFGRSHSVSKCKLPFY
        LVRINYKEDHLKLPSDCPGTSFGRSHSVSKCKLPFY
Subjt:  LVRINYKEDHLKLPSDCPGTSFGRSHSVSKCKLPFY

A0A6J1L0L1 tRNA pseudouridine synthase3.5e-18695.81Show/hide
Query:  MSYWAVGSAVLPSVPRLLSPSIPSRNGDSSPTGRGFPISEDSSCVTEPDFPSFKWRLVIAYDGTRYAGWQYQRSPPTIQCLVEEALTGATRLERKDLHLV
        MS WAVGSAVLPSVPR LSPSIPSR G  S TGRGFP SEDSSCV EPDFPSFKWRLVIAYDGTRYAGWQYQRSPPTIQCL+EEALTGATRLERKDLHLV
Subjt:  MSYWAVGSAVLPSVPRLLSPSIPSRNGDSSPTGRGFPISEDSSCVTEPDFPSFKWRLVIAYDGTRYAGWQYQRSPPTIQCLVEEALTGATRLERKDLHLV

Query:  GASRTDTGVHAWGQVAHFITPFNYDSLDRIHAALNGLLPADIRVREMSPAVPDFHARFSTLSKVYHYKIYNDAILDPFQRCYTYHCVYKLNYAAMKEAAN
        GASRTD GVHAWGQVAHFITPFNYDSLDRIHAALNGLLPADIRVRE+SPAVPDFHARFSTLSKVYHYKIYNDAILDPFQRCYTYHCVYKLNYAAMKEAAN
Subjt:  GASRTDTGVHAWGQVAHFITPFNYDSLDRIHAALNGLLPADIRVREMSPAVPDFHARFSTLSKVYHYKIYNDAILDPFQRCYTYHCVYKLNYAAMKEAAN

Query:  YFVGKHDFSAFANTAHNDRVVNPVKVIFRFDVIEMGALIQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATRDRKELAKYTTCIPPQGLCLV
        YFVGKHDFSAFANTAHNDRVVNPVKVIFRFDVIEMGALIQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPD+VPKILA+RDRK LAKYTTCIPPQGLCLV
Subjt:  YFVGKHDFSAFANTAHNDRVVNPVKVIFRFDVIEMGALIQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATRDRKELAKYTTCIPPQGLCLV

Query:  RINYKEDHLKLPSDCPGTSFGRSHSVSKCKLPFY
        RINYKEDHLKLPSDCPGTSFGRSHSVSKCKLPFY
Subjt:  RINYKEDHLKLPSDCPGTSFGRSHSVSKCKLPFY

A0A6J1L2M8 tRNA pseudouridine synthase2.2e-18595.24Show/hide
Query:  MSYWAVGSAVLPSVPRLLSPSIPSRNGDSSPTGRGFPI--SEDSSCVTEPDFPSFKWRLVIAYDGTRYAGWQYQRSPPTIQCLVEEALTGATRLERKDLH
        MS WAVGSAVLPSVPR LSPSIPSR G  S TGRGFP+  SEDSSCV EPDFPSFKWRLVIAYDGTRYAGWQYQRSPPTIQCL+EEALTGATRLERKDLH
Subjt:  MSYWAVGSAVLPSVPRLLSPSIPSRNGDSSPTGRGFPI--SEDSSCVTEPDFPSFKWRLVIAYDGTRYAGWQYQRSPPTIQCLVEEALTGATRLERKDLH

Query:  LVGASRTDTGVHAWGQVAHFITPFNYDSLDRIHAALNGLLPADIRVREMSPAVPDFHARFSTLSKVYHYKIYNDAILDPFQRCYTYHCVYKLNYAAMKEA
        LVGASRTD GVHAWGQVAHFITPFNYDSLDRIHAALNGLLPADIRVRE+SPAVPDFHARFSTLSKVYHYKIYNDAILDPFQRCYTYHCVYKLNYAAMKEA
Subjt:  LVGASRTDTGVHAWGQVAHFITPFNYDSLDRIHAALNGLLPADIRVREMSPAVPDFHARFSTLSKVYHYKIYNDAILDPFQRCYTYHCVYKLNYAAMKEA

Query:  ANYFVGKHDFSAFANTAHNDRVVNPVKVIFRFDVIEMGALIQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATRDRKELAKYTTCIPPQGLC
        ANYFVGKHDFSAFANTAHNDRVVNPVKVIFRFDVIEMGALIQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPD+VPKILA+RDRK LAKYTTCIPPQGLC
Subjt:  ANYFVGKHDFSAFANTAHNDRVVNPVKVIFRFDVIEMGALIQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATRDRKELAKYTTCIPPQGLC

Query:  LVRINYKEDHLKLPSDCPGTSFGRSHSVSKCKLPFY
        LVRINYKEDHLKLPSDCPGTSFGRSHSVSKCKLPFY
Subjt:  LVRINYKEDHLKLPSDCPGTSFGRSHSVSKCKLPFY

SwissProt top hitse value%identityAlignment
A3DJK8 tRNA pseudouridine synthase A7.5e-4540.16Show/hide
Query:  RLVIAYDGTRYAGWQYQRSPPTIQCLVEEALTGATRLERKDLHLVGASRTDTGVHAWGQVAHFITPFNYDSLDRIHAALNGLLPADIRVREMSPAVPDFH
        +L+I YDGT Y GWQ Q++  T+Q  +E A+ G T    + + L+GASRTD GVHA GQVA+FIT       DR   ALN +LP DI ++E      DFH
Subjt:  RLVIAYDGTRYAGWQYQRSPPTIQCLVEEALTGATRLERKDLHLVGASRTDTGVHAWGQVAHFITPFNYDSLDRIHAALNGLLPADIRVREMSPAVPDFH

Query:  ARFSTLSKVYHYKIYNDAILDPFQRCYTYHCVYKLNYAAMKEAANYFVGKHDFSAFANTAHNDRVVNPVKVIFRFDVIEMGALIQLEVEGSGFLYRQVRN
        AR+    K Y Y IYN        R  TYH  +KL++ +M+ AA+YF+G HDFSAF ++  + +    V+ I    +     +++ E+ G GFLY  VR 
Subjt:  ARFSTLSKVYHYKIYNDAILDPFQRCYTYHCVYKLNYAAMKEAANYFVGKHDFSAFANTAHNDRVVNPVKVIFRFDVIEMGALIQLEVEGSGFLYRQVRN

Query:  MVALLLQIGKEAIPPDIVPKILATRDRKELAKYTTCIPPQGLCLVRINY
        +V  L+++G   I  D +P+I+ +R RK   +     P +GL LV + Y
Subjt:  MVALLLQIGKEAIPPDIVPKILATRDRKELAKYTTCIPPQGLCLVRINY

A4J151 tRNA pseudouridine synthase A8.3e-4440.24Show/hide
Query:  RLVIAYDGTRYAGWQYQRSP--PTIQCLVEEALTGATRLERKDLHLVGASRTDTGVHAWGQVAHFITPFNYDSLDRIHAALNGLLPADIRVREMSPAVPD
        +L +AYDGT Y G+Q QR     TIQ  +E+AL   + + +  + ++GA RTD GVHA GQV +F +       ++   ALN LLP DI+V +      D
Subjt:  RLVIAYDGTRYAGWQYQRSP--PTIQCLVEEALTGATRLERKDLHLVGASRTDTGVHAWGQVAHFITPFNYDSLDRIHAALNGLLPADIRVREMSPAVPD

Query:  FHARFSTLSKVYHYKIYNDAILDPFQRCYTYHCVYKLNYAAMKEAANYFVGKHDFSAFANTAHNDRVVNPVKVIFRFDVIEMGALIQLEVEGSGFLYRQV
        FHARFS ++K Y Y IY+  ++ PF R Y YH   +L+  AM+E A Y +G +DF +F   A    V + ++ I+R D+IE   +I L + G+GFLY  V
Subjt:  FHARFSTLSKVYHYKIYNDAILDPFQRCYTYHCVYKLNYAAMKEAANYFVGKHDFSAFANTAHNDRVVNPVKVIFRFDVIEMGALIQLEVEGSGFLYRQV

Query:  RNMVALLLQIGKEAIPPDIVPKILATRDRKELAKYTTCIPPQGLCLVRINY
        R +   LL IG   I P+ + KI+ +++R       T  PPQGLCL+ + Y
Subjt:  RNMVALLLQIGKEAIPPDIVPKILATRDRKELAKYTTCIPPQGLCLVRINY

B1I1B5 tRNA pseudouridine synthase A6.8e-4641.83Show/hide
Query:  RLVIAYDGTRYAGWQYQRSP--PTIQCLVEEALTGATRLERKDLHLVGASRTDTGVHAWGQVAHFITPFNYDSLDRIHAALNGLLPADIRVREMSPAVPD
        RL +AYDGT Y G+Q Q     PTIQ  +E  L     L    L + GASRTD GVHA GQV +F+T       +RI AALNG+LP DI   +      D
Subjt:  RLVIAYDGTRYAGWQYQRSP--PTIQCLVEEALTGATRLERKDLHLVGASRTDTGVHAWGQVAHFITPFNYDSLDRIHAALNGLLPADIRVREMSPAVPD

Query:  FHARFSTLSKVYHYKIYNDAILDPFQRCYTYHCVYKLNYAAMKEAANYFVGKHDFSAFANTAHNDRVVNPVKVIFRFDVIEMGALIQLEVEGSGFLYRQV
        FHAR+S ++K Y Y +YN  +  PFQR Y+ H    L+  AM+ AA + +G+HDFS F   A    V + V+ + R D+     L++L     GFLY  V
Subjt:  FHARFSTLSKVYHYKIYNDAILDPFQRCYTYHCVYKLNYAAMKEAANYFVGKHDFSAFANTAHNDRVVNPVKVIFRFDVIEMGALIQLEVEGSGFLYRQV

Query:  RNMVALLLQIGKEAIPPDIVPKILATRDRKELAKYTTCIPPQGLCLVRINY
        R M   LL++G E + P+ +P I+A+ DR   A+    +PP GLCL  + Y
Subjt:  RNMVALLLQIGKEAIPPDIVPKILATRDRKELAKYTTCIPPQGLCLVRINY

Q6MEE7 tRNA pseudouridine synthase A 16.7e-5440.78Show/hide
Query:  WRLVIAYDGTRYAGWQYQRSPPTIQCLVEEALTGATRLERKDLHLVGASRTDTGVHAWGQVAHFITPFNYDSLDRIHAALNGLLPADIRVREMSPAVPDF
        ++L IAYDGT Y+GWQ Q +  +IQ  ++EAL     L+++ + LVG+ RTD GVHA GQVAHF    +Y  L R+H +LNGLLP DIR++ + P  P F
Subjt:  WRLVIAYDGTRYAGWQYQRSPPTIQCLVEEALTGATRLERKDLHLVGASRTDTGVHAWGQVAHFITPFNYDSLDRIHAALNGLLPADIRVREMSPAVPDF

Query:  HARFSTLSKVYHYKIYNDAILDPFQRCYTYHCVYKLNYAAMKEAANYFVGKHDFSAFANTAHNDRVV-NPVKVIFRFDVIEMGALIQLEVEGSGFLYRQV
        H+++S + K YHY ++ + ++DPFQR Y++H   K++   +K+AA  F G HDF++FAN AH      NPV+ ++R D+      ++LE EG GFLY+ V
Subjt:  HARFSTLSKVYHYKIYNDAILDPFQRCYTYHCVYKLNYAAMKEAANYFVGKHDFSAFANTAHNDRVV-NPVKVIFRFDVIEMGALIQLEVEGSGFLYRQV

Query:  RNMVALLLQIGKEAIPPDIVPKILATRDRKELAKYTTCIPPQGLCLVRINYKEDH
        RN+V  L+ +       + + +I A ++R++    +   PP+GL L+++ Y+ ++
Subjt:  RNMVALLLQIGKEAIPPDIVPKILATRDRKELAKYTTCIPPQGLCLVRINYKEDH

Q8R7Y7 tRNA pseudouridine synthase A5.2e-4644.35Show/hide
Query:  LVIAYDGTRYAGWQYQRSPPTIQCLVEEALTGATRLERKDLHLVGASRTDTGVHAWGQVAHFITPFNYDSLDRIHAALNGLLPADIRVREMSPAVPDFHA
        L+I YDGT Y GWQYQ++  T+Q ++E+A+   T    + ++L+G+SRTDTGVHA  QVA+F T       +++  ALN +LP D+ V +       FHA
Subjt:  LVIAYDGTRYAGWQYQRSPPTIQCLVEEALTGATRLERKDLHLVGASRTDTGVHAWGQVAHFITPFNYDSLDRIHAALNGLLPADIRVREMSPAVPDFHA

Query:  RFSTLSKVYHYKIYNDAILDPFQRCYTYHCVYKLNYAAMKEAANYFVGKHDFSAFANTAHNDRVVNPVKVIFRFDVIEMGALIQLEVEGSGFLYRQVRNM
        R+S  SK Y Y I N     P  R Y +H  Y L+  AMK+AA +F G HDFSAF   A  ++ VNPVK IF   V + G LI++EVE  GFLY  VR +
Subjt:  RFSTLSKVYHYKIYNDAILDPFQRCYTYHCVYKLNYAAMKEAANYFVGKHDFSAFANTAHNDRVVNPVKVIFRFDVIEMGALIQLEVEGSGFLYRQVRNM

Query:  VALLLQIGKEAIPPDIVPKILATRDRKELAKYTTCIPPQGLCLVRINY
        V  L+ +G   I    +P I+ ++DR    K     PPQGL LVRI Y
Subjt:  VALLLQIGKEAIPPDIVPKILATRDRKELAKYTTCIPPQGLCLVRINY

Arabidopsis top hitse value%identityAlignment
AT1G34150.1 Pseudouridine synthase family protein1.2e-1631.01Show/hide
Query:  LVIAYDGTRYAGWQYQ-RSPPTIQCLVEEALTGATRL---ERKDLHLVGASRTDTGVHAWGQVAHFITPFNY-----DSLDRIHA------------ALN
        L I Y G R+ G+  + +  P+I+  V +AL   TRL   ++KD       RTD GV + GQV              DS  +++              LN
Subjt:  LVIAYDGTRYAGWQYQ-RSPPTIQCLVEEALTGATRL---ERKDLHLVGASRTDTGVHAWGQVAHFITPFNY-----DSLDRIHA------------ALN

Query:  GLLPADIRVREMSPAVPDFHARFSTLSKVYHYKIYNDAILDPFQRCYTYHCVYKLNYAAMKEAANYFVGKHDFSAF-----ANTAHNDRVVNPVKVIFRF
          LP DIRV   SPA  DFHARFS  ++ Y Y  +                   LN +AM  A   F+G+HDF  F     AN     R V   +V    
Subjt:  GLLPADIRVREMSPAVPDFHARFSTLSKVYHYKIYNDAILDPFQRCYTYHCVYKLNYAAMKEAANYFVGKHDFSAF-----ANTAHNDRVVNPVKVIFRF

Query:  DVIEMGALIQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATRDRKELAKY
        +  E   L    + GS FL+ Q+R MVA+L  IG+     D++  +L T+      +Y
Subjt:  DVIEMGALIQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATRDRKELAKY

AT3G06950.1 Pseudouridine synthase family protein4.1e-12365.85Show/hide
Query:  SAVLPSVPRLLSPSIPSRNGDSSPTGRGFPISEDSSCVTEPDFPSFKWRLVIAYDGTRYAGWQYQRSPPTIQCLVEEALTGATRLERKDLHLVGASRTDT
        S V P++P    PS+ +    SSP  +   ++  +S V   D  ++KWRLVIAYDGTR+AGWQYQ SPPTIQ ++E+AL   T L RK+L L+GA RTD 
Subjt:  SAVLPSVPRLLSPSIPSRNGDSSPTGRGFPISEDSSCVTEPDFPSFKWRLVIAYDGTRYAGWQYQRSPPTIQCLVEEALTGATRLERKDLHLVGASRTDT

Query:  GVHAWGQVAHFITPFNYDSLDRIHAALNGLLPADIRVREMSPAVPDFHARFSTLSKVYHYKIYNDAILDPFQRCYTYHCVYKLNYAAMKEAANYFVGKHD
        GVHAWGQVAHF+TPFNY SLD  HAALNGLLP DIRVRE+S AVP+FHARFS  SKVY Y+IYND  +DPFQR + YHC YKLN + M+EAAN FVGKHD
Subjt:  GVHAWGQVAHFITPFNYDSLDRIHAALNGLLPADIRVREMSPAVPDFHARFSTLSKVYHYKIYNDAILDPFQRCYTYHCVYKLNYAAMKEAANYFVGKHD

Query:  FSAFANTAHNDRVVNPVKVIFRFDVIEMGALIQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATRDRKELAKYTTC-IPPQGLCLVRINYKE
        FSAFAN    D V +P+K I RFDVI+MG+L+QLEVEGSGFLYRQVRNMVALL+QIGKEA+  DIVP IL T+DR+ LAKYT+    P GLCLV + YKE
Subjt:  FSAFANTAHNDRVVNPVKVIFRFDVIEMGALIQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATRDRKELAKYTTC-IPPQGLCLVRINYKE

Query:  DHLKLPSDCPGTSFGRSHSVSKCKLPFY
        DHLKLP DCP TS GR H+++KCKLPFY
Subjt:  DHLKLPSDCPGTSFGRSHSVSKCKLPFY

AT5G35400.1 Pseudouridine synthase family protein2.0e-0832.85Show/hide
Query:  TEPDFPSFKW-----RLVIAYDGTRYAGWQYQRSPPTIQCLVEEALTG------ATRLERKDLHLVG----ASRTDTGVHAWGQVAHFITPFNYDSLDRI
        T  D  S +W     ++V++Y+G  + GWQ Q    T+Q +VE++L G      A  L++K   L G    A RTD GV A  QV  F T         I
Subjt:  TEPDFPSFKW-----RLVIAYDGTRYAGWQYQRSPPTIQCLVEEALTG------ATRLERKDLHLVG----ASRTDTGVHAWGQVAHFITPFNYDSLDRI

Query:  HAALNGLLPADIRVREMSPAVPDFHARFSTLSKVYHY
          A+N      +RV  +S     FH  FS   + Y Y
Subjt:  HAALNGLLPADIRVREMSPAVPDFHARFSTLSKVYHY

AT5G35400.2 Pseudouridine synthase family protein2.0e-0832.85Show/hide
Query:  TEPDFPSFKW-----RLVIAYDGTRYAGWQYQRSPPTIQCLVEEALTG------ATRLERKDLHLVG----ASRTDTGVHAWGQVAHFITPFNYDSLDRI
        T  D  S +W     ++V++Y+G  + GWQ Q    T+Q +VE++L G      A  L++K   L G    A RTD GV A  QV  F T         I
Subjt:  TEPDFPSFKW-----RLVIAYDGTRYAGWQYQRSPPTIQCLVEEALTG------ATRLERKDLHLVG----ASRTDTGVHAWGQVAHFITPFNYDSLDRI

Query:  HAALNGLLPADIRVREMSPAVPDFHARFSTLSKVYHY
          A+N      +RV  +S     FH  FS   + Y Y
Subjt:  HAALNGLLPADIRVREMSPAVPDFHARFSTLSKVYHY


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGTTACTGGGCGGTGGGTTCTGCGGTTCTTCCCTCCGTTCCCCGTCTTCTTTCACCAAGCATCCCATCTCGAAATGGCGATTCATCTCCCACCGGTCGTGGATTTCC
GATTTCGGAGGATTCTTCTTGTGTTACAGAGCCCGATTTCCCCAGCTTCAAATGGCGGTTGGTCATTGCTTATGACGGCACTCGATATGCAGGTTGGCAATATCAGCGGT
CACCACCTACTATTCAGTGCCTTGTTGAAGAAGCCTTGACCGGAGCAACAAGGCTTGAGAGGAAGGATCTCCATTTAGTTGGTGCAAGCAGAACAGATACGGGAGTTCAT
GCCTGGGGTCAGGTGGCTCACTTTATTACACCATTTAACTACGACAGCTTGGACAGAATTCATGCTGCTCTGAATGGTCTTCTTCCTGCGGATATAAGAGTTCGAGAGAT
GAGTCCTGCTGTGCCTGACTTTCATGCTCGGTTTTCTACATTAAGCAAGGTTTATCACTACAAGATATATAATGACGCCATCTTGGATCCATTTCAGCGTTGCTACACTT
ACCACTGTGTTTATAAACTCAATTATGCAGCCATGAAAGAGGCTGCAAATTATTTCGTTGGAAAGCATGATTTTTCTGCCTTTGCTAATACAGCGCATAACGATCGAGTG
GTAAATCCAGTGAAGGTCATTTTTCGTTTTGACGTCATAGAAATGGGAGCTCTTATTCAGCTAGAAGTTGAGGGTTCTGGGTTCCTGTATAGACAAGTTCGGAATATGGT
TGCCTTGTTGCTTCAAATTGGAAAAGAAGCAATTCCTCCTGACATTGTTCCTAAGATTTTGGCTACTCGAGATCGCAAGGAGCTTGCCAAGTATACGACGTGCATTCCTC
CTCAGGGTCTCTGTCTTGTGAGAATTAATTATAAAGAGGACCATTTAAAGCTTCCATCTGATTGCCCTGGGACTAGTTTTGGCAGGAGTCATAGTGTGAGTAAATGTAAG
CTCCCTTTTTATTGA
mRNA sequenceShow/hide mRNA sequence
ATGAGTTACTGGGCGGTGGGTTCTGCGGTTCTTCCCTCCGTTCCCCGTCTTCTTTCACCAAGCATCCCATCTCGAAATGGCGATTCATCTCCCACCGGTCGTGGATTTCC
GATTTCGGAGGATTCTTCTTGTGTTACAGAGCCCGATTTCCCCAGCTTCAAATGGCGGTTGGTCATTGCTTATGACGGCACTCGATATGCAGGTTGGCAATATCAGCGGT
CACCACCTACTATTCAGTGCCTTGTTGAAGAAGCCTTGACCGGAGCAACAAGGCTTGAGAGGAAGGATCTCCATTTAGTTGGTGCAAGCAGAACAGATACGGGAGTTCAT
GCCTGGGGTCAGGTGGCTCACTTTATTACACCATTTAACTACGACAGCTTGGACAGAATTCATGCTGCTCTGAATGGTCTTCTTCCTGCGGATATAAGAGTTCGAGAGAT
GAGTCCTGCTGTGCCTGACTTTCATGCTCGGTTTTCTACATTAAGCAAGGTTTATCACTACAAGATATATAATGACGCCATCTTGGATCCATTTCAGCGTTGCTACACTT
ACCACTGTGTTTATAAACTCAATTATGCAGCCATGAAAGAGGCTGCAAATTATTTCGTTGGAAAGCATGATTTTTCTGCCTTTGCTAATACAGCGCATAACGATCGAGTG
GTAAATCCAGTGAAGGTCATTTTTCGTTTTGACGTCATAGAAATGGGAGCTCTTATTCAGCTAGAAGTTGAGGGTTCTGGGTTCCTGTATAGACAAGTTCGGAATATGGT
TGCCTTGTTGCTTCAAATTGGAAAAGAAGCAATTCCTCCTGACATTGTTCCTAAGATTTTGGCTACTCGAGATCGCAAGGAGCTTGCCAAGTATACGACGTGCATTCCTC
CTCAGGGTCTCTGTCTTGTGAGAATTAATTATAAAGAGGACCATTTAAAGCTTCCATCTGATTGCCCTGGGACTAGTTTTGGCAGGAGTCATAGTGTGAGTAAATGTAAG
CTCCCTTTTTATTGAACTAATGACGGCTCTGTTCTTGCACTTCTGCCATGAGAATAATCTGGGTTGCAGGGTGTCCAACAGCTTAGGAGGCTGAGATATTAGATAAGCAG
TGTAGTTTAAGTAAACAAAATTTTGGATTAGTTGGTCTTTATTAATTTATGAATTAGAATTCTAGAGTGTGTTAGTTTGTTATTTGTCCATTTTTTCTTAGGCTAGAAGT
GGGCTTTTTTAGTGTTGTATTGGGACTTTTGGAGCTTTGCACATTATTATTGCAAAACGTGGTATTTTAGAGGGTTTCTCTCAATTATGGAGAATGGAAGGTT
Protein sequenceShow/hide protein sequence
MSYWAVGSAVLPSVPRLLSPSIPSRNGDSSPTGRGFPISEDSSCVTEPDFPSFKWRLVIAYDGTRYAGWQYQRSPPTIQCLVEEALTGATRLERKDLHLVGASRTDTGVH
AWGQVAHFITPFNYDSLDRIHAALNGLLPADIRVREMSPAVPDFHARFSTLSKVYHYKIYNDAILDPFQRCYTYHCVYKLNYAAMKEAANYFVGKHDFSAFANTAHNDRV
VNPVKVIFRFDVIEMGALIQLEVEGSGFLYRQVRNMVALLLQIGKEAIPPDIVPKILATRDRKELAKYTTCIPPQGLCLVRINYKEDHLKLPSDCPGTSFGRSHSVSKCK
LPFY