; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

CmoCh17G003960 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh17G003960
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
DescriptionLINE-1 retrotransposable element ORF2 protein
Genome locationCmo_Chr17:2585707..2589354
RNA-Seq ExpressionCmoCh17G003960
SyntenyCmoCh17G003960
Gene Ontology termsGO:0016020 - membrane (cellular component)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG7013723.1 hypothetical protein SDJN02_23890, partial [Cucurbita argyrosperma subsp. argyrosperma]1.8e-9193.3Show/hide
Query:  MFLVQLQQFEPLLDATSLLTQISKDADVRFTAFMLSLIASHTSPRFVATLQMSCRLFTNYSVDHYYSSKVSLESFHDAMLDGGSFSSMSIHVLESRQQMI
        MFLVQLQQFEPLLDATSLLTQISKDADVRFTAFMLSLIASHTSPRFVATLQMSCRLFTNYSVDHYYSSKVSLESFHDAMLDGGSFSSMSIHVLESRQQMI
Subjt:  MFLVQLQQFEPLLDATSLLTQISKDADVRFTAFMLSLIASHTSPRFVATLQMSCRLFTNYSVDHYYSSKVSLESFHDAMLDGGSFSSMSIHVLESRQQMI

Query:  LRYENPSSNDPPLYLELPLSPPQAESLGQVEYGKFFTVNSKVLRKIIKELPLFHDDLVRVAATSTRVKFSIASKEITVTKEIHSFALGGFHSRN
        LRYENPSSNDPPL+LELPLSPPQAESLGQVEYGKFFTVNSKVLRKIIKELPLFHDDLVRVAATSTRVKFSIASKEITVTKE  +  + G+   +
Subjt:  LRYENPSSNDPPLYLELPLSPPQAESLGQVEYGKFFTVNSKVLRKIIKELPLFHDDLVRVAATSTRVKFSIASKEITVTKEIHSFALGGFHSRN

TYK02993.1 uncharacterized protein E5676_scaffold46G00820 [Cucumis melo var. makuwa]2.2e-4962.09Show/hide
Query:  MFLVQLQQFEPLLDATSLLTQISKDADVRFTAFMLSLIASHTSPRFVATLQMSCRLFTNYSVDHYYSSKVSLESFHDAMLDGGSFSSMSIHVLESRQQMI
        MFLV+L+QFEPL+DATSLL Q++KDADV+FT  ML +I S+ SP+FVATLQ+S RLFTN+SVDH  SSKVSL+ FHDAMLDGG                 
Subjt:  MFLVQLQQFEPLLDATSLLTQISKDADVRFTAFMLSLIASHTSPRFVATLQMSCRLFTNYSVDHYYSSKVSLESFHDAMLDGGSFSSMSIHVLESRQQMI

Query:  LRYENPSSNDPPLYLELPLSPPQAESLGQVEYGKFFTVNSKVLRKIIKELPLFHDDLVRVAATSTRVKFSIASKEITVTKEI
              S + PPL+ EL LSPPQAE+LGQVEYG FFTV S+ LR+IIKELPLFH D V V  T ++VKFSI SKEI +TKE+
Subjt:  LRYENPSSNDPPLYLELPLSPPQAESLGQVEYGKFFTVNSKVLRKIIKELPLFHDDLVRVAATSTRVKFSIASKEITVTKEI

XP_008458682.1 PREDICTED: uncharacterized protein LOC103498010 [Cucumis melo]3.8e-6270.17Show/hide
Query:  MFLVQLQQFEPLLDATSLLTQISKDADVRFTAFMLSLIASHTSPRFVATLQMSCRLFTNYSVDHYYSSKVSLESFHDAMLDGGSFSSMSIHVLESRQQMI
        MFLV+L+QFEPL+DATSLL Q++KDADV+FT  ML +I S+ SP+FVATLQ+S RLFTN+SVDH  SSKVSL+ FHDAMLDGGSFSSM+IH+L++  QM+
Subjt:  MFLVQLQQFEPLLDATSLLTQISKDADVRFTAFMLSLIASHTSPRFVATLQMSCRLFTNYSVDHYYSSKVSLESFHDAMLDGGSFSSMSIHVLESRQQMI

Query:  LRYENPSSNDPPLYLELPLSPPQAESLGQVEYGKFFTVNSKVLRKIIKELPLFHDDLVRVAATSTRVKFSIASKEITVTKE
        LR+E PS + PPL+ EL LSPPQAE+LGQVEYG FFTV S+ LR+IIKELPLFH D V V  T ++VKFSI SKEI +TKE
Subjt:  LRYENPSSNDPPLYLELPLSPPQAESLGQVEYGKFFTVNSKVLRKIIKELPLFHDDLVRVAATSTRVKFSIASKEITVTKE

XP_031743987.1 uncharacterized protein LOC116404759 [Cucumis sativus]3.2e-4860.32Show/hide
Query:  MFLVQLQQFEPLLDATSLLTQIS-KDADVRFTAFMLSLIASHTSPRFVATLQMSCRLFTNYSVDHYYSSKVSLESFHDAMLDGGSFSSMSIHVLESRQQM
        MFLV+L  F+PLLDATS   QIS  DADV+FT     +I+SH SPRF+ATLQ+S + FT++SVDH +SSKVSLESFHDA+LDGGSF+SM+IH+L+   Q+
Subjt:  MFLVQLQQFEPLLDATSLLTQIS-KDADVRFTAFMLSLIASHTSPRFVATLQMSCRLFTNYSVDHYYSSKVSLESFHDAMLDGGSFSSMSIHVLESRQQM

Query:  ILRYENPSSNDPPLYLELPLSPPQAE--SLGQ--VEYGKFFTVNSKVLRKIIKELPLF-HDDLVRVAATSTRVKFSIASKEITVTKEIH
        ILR++ PSS   PL+ EL LSPPQAE   +GQ  ++ GK+F V SK LR+IIKELP+F +D +V V  T++RVKFSIASKEI + +  H
Subjt:  ILRYENPSSNDPPLYLELPLSPPQAE--SLGQ--VEYGKFFTVNSKVLRKIIKELPLF-HDDLVRVAATSTRVKFSIASKEITVTKEIH

XP_038875055.1 uncharacterized protein LOC120067580 [Benincasa hispida]1.5e-5062.5Show/hide
Query:  MFLVQLQQFEPLLDATSLLTQISKDADVRFTAFMLSLIASHTSPRFVATLQMSCRLFTNYSVDHYYSSKVSLESFHDAMLDGGSFSSMSIHVLESRQQMI
        MFLV+L  FEPLLDATS L QIS  ADV+FT     LIA + SPRFVATLQ+S + FTNYSVDH ++SKV LESFHDA+LDGGSF+SM+IH+LE   QMI
Subjt:  MFLVQLQQFEPLLDATSLLTQISKDADVRFTAFMLSLIASHTSPRFVATLQMSCRLFTNYSVDHYYSSKVSLESFHDAMLDGGSFSSMSIHVLESRQQMI

Query:  LRYENPSSNDPPLYLELPLSPPQAESL---GQVEYGKFFTVNSKVLRKIIKELPLFHDD-LVRVAATSTRVKFSIASKEITVTKEIHSFALG
        LR++ PSS  PPL+ EL  SPPQ       GQ+E GKFF V S+ LR+IIKELP+F DD +V V  TS+++KFSIASKEI V K  H   +G
Subjt:  LRYENPSSNDPPLYLELPLSPPQAESL---GQVEYGKFFTVNSKVLRKIIKELPLFHDD-LVRVAATSTRVKFSIASKEITVTKEIHSFALG

TrEMBL top hitse value%identityAlignment
A0A1S3C8J1 uncharacterized protein LOC1034980101.9e-6270.17Show/hide
Query:  MFLVQLQQFEPLLDATSLLTQISKDADVRFTAFMLSLIASHTSPRFVATLQMSCRLFTNYSVDHYYSSKVSLESFHDAMLDGGSFSSMSIHVLESRQQMI
        MFLV+L+QFEPL+DATSLL Q++KDADV+FT  ML +I S+ SP+FVATLQ+S RLFTN+SVDH  SSKVSL+ FHDAMLDGGSFSSM+IH+L++  QM+
Subjt:  MFLVQLQQFEPLLDATSLLTQISKDADVRFTAFMLSLIASHTSPRFVATLQMSCRLFTNYSVDHYYSSKVSLESFHDAMLDGGSFSSMSIHVLESRQQMI

Query:  LRYENPSSNDPPLYLELPLSPPQAESLGQVEYGKFFTVNSKVLRKIIKELPLFHDDLVRVAATSTRVKFSIASKEITVTKE
        LR+E PS + PPL+ EL LSPPQAE+LGQVEYG FFTV S+ LR+IIKELPLFH D V V  T ++VKFSI SKEI +TKE
Subjt:  LRYENPSSNDPPLYLELPLSPPQAESLGQVEYGKFFTVNSKVLRKIIKELPLFHDDLVRVAATSTRVKFSIASKEITVTKE

A0A1S3CL88 uncharacterized protein LOC1035022505.8e-4860.32Show/hide
Query:  MFLVQLQQFEPLLDATSLLTQISKD-ADVRFTAFMLSLIASHTSPRFVATLQMSCRLFTNYSVDHYYSSKVSLESFHDAMLDGGSFSSMSIHVLESRQQM
        MFLV+L+ F+PLLDATS L QIS D AD++FT     +IASH SPRF+ATLQ+S + FT +SVD+ +SSKVSLESFHDA+LDGGSF+SM+IH+L+   QM
Subjt:  MFLVQLQQFEPLLDATSLLTQISKD-ADVRFTAFMLSLIASHTSPRFVATLQMSCRLFTNYSVDHYYSSKVSLESFHDAMLDGGSFSSMSIHVLESRQQM

Query:  ILRYENPSSNDPPLYLELPLSPPQAE--SLGQVEYG--KFFTVNSKVLRKIIKELPLF-HDDLVRVAATSTRVKFSIASKEITVTKEIH
        ILR++ PSS   PL+ EL LSPPQAE   +GQ E    K+F V SK LR+IIK+LP+F +D ++ V  T++RVKFSIASKEI +T+  H
Subjt:  ILRYENPSSNDPPLYLELPLSPPQAE--SLGQVEYG--KFFTVNSKVLRKIIKELPLF-HDDLVRVAATSTRVKFSIASKEITVTKEIH

A0A1S4E4N8 uncharacterized protein LOC1035022635.8e-4856.35Show/hide
Query:  MFLVQLQQFEPLLDATSLLTQISKDADVRFTAFMLSLIASHTSPRFVATLQMSCRLFTNYSVDHYYSSKVSLESFHDAMLDGGSFSSMSIHVLESRQQMI
        MFLV+L+ F+PL DATS L QI+++AD++FT    S+IAS+ SPRFVA LQM+   F NY VD+ ++S++SLESFHDA+LDGG+  SM+IH+L + +Q+I
Subjt:  MFLVQLQQFEPLLDATSLLTQISKDADVRFTAFMLSLIASHTSPRFVATLQMSCRLFTNYSVDHYYSSKVSLESFHDAMLDGGSFSSMSIHVLESRQQMI

Query:  LRYENPSSNDPPLYLELPLSPPQAESLGQVEYGKFFTVNSKVLRKIIKELPLFHDDLVRVAATSTRVKFSIASKEITVTKE
        LR+E+ SS+ P ++ EL L+P Q E LG+V+Y KFF+++SK LR++I+ LP+FH D + V AT ++VKFSIASKEI +TKE
Subjt:  LRYENPSSNDPPLYLELPLSPPQAESLGQVEYGKFFTVNSKVLRKIIKELPLFHDDLVRVAATSTRVKFSIASKEITVTKE

A0A5D3BTK3 Uncharacterized protein1.1e-4962.09Show/hide
Query:  MFLVQLQQFEPLLDATSLLTQISKDADVRFTAFMLSLIASHTSPRFVATLQMSCRLFTNYSVDHYYSSKVSLESFHDAMLDGGSFSSMSIHVLESRQQMI
        MFLV+L+QFEPL+DATSLL Q++KDADV+FT  ML +I S+ SP+FVATLQ+S RLFTN+SVDH  SSKVSL+ FHDAMLDGG                 
Subjt:  MFLVQLQQFEPLLDATSLLTQISKDADVRFTAFMLSLIASHTSPRFVATLQMSCRLFTNYSVDHYYSSKVSLESFHDAMLDGGSFSSMSIHVLESRQQMI

Query:  LRYENPSSNDPPLYLELPLSPPQAESLGQVEYGKFFTVNSKVLRKIIKELPLFHDDLVRVAATSTRVKFSIASKEITVTKEI
              S + PPL+ EL LSPPQAE+LGQVEYG FFTV S+ LR+IIKELPLFH D V V  T ++VKFSI SKEI +TKE+
Subjt:  LRYENPSSNDPPLYLELPLSPPQAESLGQVEYGKFFTVNSKVLRKIIKELPLFHDDLVRVAATSTRVKFSIASKEITVTKEI

A0A5D3DZ07 LINE-1 retrotransposable element ORF2 protein5.8e-4860.32Show/hide
Query:  MFLVQLQQFEPLLDATSLLTQISKD-ADVRFTAFMLSLIASHTSPRFVATLQMSCRLFTNYSVDHYYSSKVSLESFHDAMLDGGSFSSMSIHVLESRQQM
        MFLV+L+ F+PLLDATS L QIS D AD++FT     +IASH SPRF+ATLQ+S + FT +SVD+ +SSKVSLESFHDA+LDGGSF+SM+IH+L+   QM
Subjt:  MFLVQLQQFEPLLDATSLLTQISKD-ADVRFTAFMLSLIASHTSPRFVATLQMSCRLFTNYSVDHYYSSKVSLESFHDAMLDGGSFSSMSIHVLESRQQM

Query:  ILRYENPSSNDPPLYLELPLSPPQAE--SLGQVEYG--KFFTVNSKVLRKIIKELPLF-HDDLVRVAATSTRVKFSIASKEITVTKEIH
        ILR++ PSS   PL+ EL LSPPQAE   +GQ E    K+F V SK LR+IIK+LP+F +D ++ V  T++RVKFSIASKEI +T+  H
Subjt:  ILRYENPSSNDPPLYLELPLSPPQAE--SLGQVEYG--KFFTVNSKVLRKIIKELPLF-HDDLVRVAATSTRVKFSIASKEITVTKEIH

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTTCTTGGTCCAGCTTCAACAATTTGAACCTCTTCTGGACGCAACCTCCCTACTAACTCAAATTTCTAAGGACGCCGACGTGAGATTCACCGCGTTTATGCTCTCGTT
AATTGCCTCGCACACTTCCCCTCGCTTCGTCGCAACGCTGCAAATGTCGTGCCGATTGTTCACCAACTACTCCGTCGACCATTATTACAGTTCGAAGGTTTCCCTCGAGT
CCTTCCACGATGCTATGTTGGATGGTGGAAGTTTTTCTTCAATGTCAATCCATGTTTTGGAATCAAGACAACAAATGATCCTTAGATATGAGAATCCATCAAGCAATGAC
CCACCATTGTATCTTGAATTGCCATTGTCACCACCACAAGCCGAGAGCTTAGGCCAAGTTGAATATGGCAAATTTTTCACTGTTAATTCTAAAGTGTTAAGGAAAATTAT
AAAAGAATTGCCTCTCTTCCACGATGATTTAGTTCGTGTCGCTGCAACGAGTACTCGAGTCAAGTTCTCAATAGCATCTAAGGAGATTACTGTTACTAAAGAGATACACA
GCTTTGCACTCGGAGGATTCCACTCAAGAAATTCTGCCATTATTTGA
mRNA sequenceShow/hide mRNA sequence
ATGTTCTTGGTCCAGCTTCAACAATTTGAACCTCTTCTGGACGCAACCTCCCTACTAACTCAAATTTCTAAGGACGCCGACGTGAGATTCACCGCGTTTATGCTCTCGTT
AATTGCCTCGCACACTTCCCCTCGCTTCGTCGCAACGCTGCAAATGTCGTGCCGATTGTTCACCAACTACTCCGTCGACCATTATTACAGTTCGAAGGTTTCCCTCGAGT
CCTTCCACGATGCTATGTTGGATGGTGGAAGTTTTTCTTCAATGTCAATCCATGTTTTGGAATCAAGACAACAAATGATCCTTAGATATGAGAATCCATCAAGCAATGAC
CCACCATTGTATCTTGAATTGCCATTGTCACCACCACAAGCCGAGAGCTTAGGCCAAGTTGAATATGGCAAATTTTTCACTGTTAATTCTAAAGTGTTAAGGAAAATTAT
AAAAGAATTGCCTCTCTTCCACGATGATTTAGTTCGTGTCGCTGCAACGAGTACTCGAGTCAAGTTCTCAATAGCATCTAAGGAGATTACTGTTACTAAAGAGATACACA
GCTTTGCACTCGGAGGATTCCACTCAAGAAATTCTGCCATTATTTGA
Protein sequenceShow/hide protein sequence
MFLVQLQQFEPLLDATSLLTQISKDADVRFTAFMLSLIASHTSPRFVATLQMSCRLFTNYSVDHYYSSKVSLESFHDAMLDGGSFSSMSIHVLESRQQMILRYENPSSND
PPLYLELPLSPPQAESLGQVEYGKFFTVNSKVLRKIIKELPLFHDDLVRVAATSTRVKFSIASKEITVTKEIHSFALGGFHSRNSAII