CuGenDBv2

Gene ID	CmoCh17G004050
Organism	Cucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
Description	shootin-1-like
Genome location	Cmo_Chr17:2690868..2694947
RNA-Seq Expression	CmoCh17G004050
Synteny	CmoCh17G004050
Gene Ontology terms	NA
InterPro domains	NA

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAG6575171.1 hypothetical protein SDJN03_25810, partial [Cucurbita argyrosperma subsp. sororia]

2.9e-105

99.51

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Query:  MEEIKAPQSAPLPPSTAPSQPTPPLPPLPPKPKKRPLDRNAYIQYTKMRAVIRDLRPHFLEVLKTPEFRNCKAANEIRERIKLLQDMYIMMMATTSESLY
        MEEIKAPQSAPLPPSTAPSQPTPPLPPLPPKPKKRPLDRNAYIQYTKMRAVIRDLRPHFLEVLKTPEFRNCKAANEIRERIKLLQDMYIMMMATTSESLY
Subjt:  MEEIKAPQSAPLPPSTAPSQPTPPLPPLPPKPKKRPLDRNAYIQYTKMRAVIRDLRPHFLEVLKTPEFRNCKAANEIRERIKLLQDMYIMMMATTSESLY

Query:  IEKTSNVLDGQSLSVDNQDQRSREQHHDGKQGGKSSTKSYESNHPSSHAPEKHGANDGQTSGTYIVGGSAFGWNFIAFTGTEPVYYGVTKEEFRKKNPIV
        IEKTSNVLDGQSLSVDNQDQRSREQHHDGKQGGKSSTKSYESNHPSSHAPEK GANDGQTSGTYIVGGSAFGWNFIAFTGTEPVYYGVTKEEFRKKNPIV
Subjt:  IEKTSNVLDGQSLSVDNQDQRSREQHHDGKQGGKSSTKSYESNHPSSHAPEKHGANDGQTSGTYIVGGSAFGWNFIAFTGTEPVYYGVTKEEFRKKNPIV

Query:  SSES
        SSES
Subjt:  SSES

KAG7013731.1 hypothetical protein SDJN02_23898 [Cucurbita argyrosperma subsp. argyrosperma]

2.5e-104

99.02

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Query:  MEEIKAPQSAPLPPSTAPSQPTPPLPPLPPKPKKRPLDRNAYIQYTKMRAVIRDLRPHFLEVLKTPEFRNCKAANEIRERIKLLQDMYIMMMATTSESLY
        MEEIKAPQSAPLPPSTAPSQPTPPLPPLPPKPKKRPLDRNAYIQYTKMRAVIRDLRPHFLEVLKT EFRNCKAANEIRERIKLLQDMYIMMMATTSESLY
Subjt:  MEEIKAPQSAPLPPSTAPSQPTPPLPPLPPKPKKRPLDRNAYIQYTKMRAVIRDLRPHFLEVLKTPEFRNCKAANEIRERIKLLQDMYIMMMATTSESLY

Query:  IEKTSNVLDGQSLSVDNQDQRSREQHHDGKQGGKSSTKSYESNHPSSHAPEKHGANDGQTSGTYIVGGSAFGWNFIAFTGTEPVYYGVTKEEFRKKNPIV
        IEKTSNVLDGQSLSVDNQDQRSREQHHDGKQGGKSSTKSYESNHPSSHAPEK GANDGQTSGTYIVGGSAFGWNFIAFTGTEPVYYGVTKEEFRKKNPIV
Subjt:  IEKTSNVLDGQSLSVDNQDQRSREQHHDGKQGGKSSTKSYESNHPSSHAPEKHGANDGQTSGTYIVGGSAFGWNFIAFTGTEPVYYGVTKEEFRKKNPIV

Query:  SSES
        SSES
Subjt:  SSES

XP_022959506.1 uncharacterized protein LOC111460466 [Cucurbita moschata]

3.4e-106

100

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Query:  MEEIKAPQSAPLPPSTAPSQPTPPLPPLPPKPKKRPLDRNAYIQYTKMRAVIRDLRPHFLEVLKTPEFRNCKAANEIRERIKLLQDMYIMMMATTSESLY
        MEEIKAPQSAPLPPSTAPSQPTPPLPPLPPKPKKRPLDRNAYIQYTKMRAVIRDLRPHFLEVLKTPEFRNCKAANEIRERIKLLQDMYIMMMATTSESLY
Subjt:  MEEIKAPQSAPLPPSTAPSQPTPPLPPLPPKPKKRPLDRNAYIQYTKMRAVIRDLRPHFLEVLKTPEFRNCKAANEIRERIKLLQDMYIMMMATTSESLY

Query:  IEKTSNVLDGQSLSVDNQDQRSREQHHDGKQGGKSSTKSYESNHPSSHAPEKHGANDGQTSGTYIVGGSAFGWNFIAFTGTEPVYYGVTKEEFRKKNPIV
        IEKTSNVLDGQSLSVDNQDQRSREQHHDGKQGGKSSTKSYESNHPSSHAPEKHGANDGQTSGTYIVGGSAFGWNFIAFTGTEPVYYGVTKEEFRKKNPIV
Subjt:  IEKTSNVLDGQSLSVDNQDQRSREQHHDGKQGGKSSTKSYESNHPSSHAPEKHGANDGQTSGTYIVGGSAFGWNFIAFTGTEPVYYGVTKEEFRKKNPIV

Query:  SSES
        SSES
Subjt:  SSES

XP_023006667.1 uncharacterized protein LOC111499323 [Cucurbita maxima]

1.3e-102

97.06

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Query:  MEEIKAPQSAPLPPSTAPSQPTPPLPPLPPKPKKRPLDRNAYIQYTKMRAVIRDLRPHFLEVLKTPEFRNCKAANEIRERIKLLQDMYIMMMATTSESLY
        MEEIKA QSAPLPPSTAPSQPTPPLPPLPPKPKKRPLDRNAYIQYTKMRAVIRDLRPHFLEVLKTPEFRNCKAANEIRERIKLLQDMYI+MMATTSESLY
Subjt:  MEEIKAPQSAPLPPSTAPSQPTPPLPPLPPKPKKRPLDRNAYIQYTKMRAVIRDLRPHFLEVLKTPEFRNCKAANEIRERIKLLQDMYIMMMATTSESLY

Query:  IEKTSNVLDGQSLSVDNQDQRSREQHHDGKQGGKSSTKSYESNHPSSHAPEKHGANDGQTSGTYIVGGSAFGWNFIAFTGTEPVYYGVTKEEFRKKNPIV
        IEKTSNVLDGQS+SVDNQDQRSREQ+HDGKQGGKSSTKSYESNHPSSHAPEK GANDGQTSGTYIVGGSAFGWNFIAFTGTEPVYYGVTKEEFR+KNPIV
Subjt:  IEKTSNVLDGQSLSVDNQDQRSREQHHDGKQGGKSSTKSYESNHPSSHAPEKHGANDGQTSGTYIVGGSAFGWNFIAFTGTEPVYYGVTKEEFRKKNPIV

Query:  SSES
        SSES
Subjt:  SSES

XP_023548253.1 uncharacterized protein LOC111806942 [Cucurbita pepo subsp. pepo]

2.1e-103

98.04

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Query:  MEEIKAPQSAPLPPSTAPSQPTPPLPPLPPKPKKRPLDRNAYIQYTKMRAVIRDLRPHFLEVLKTPEFRNCKAANEIRERIKLLQDMYIMMMATTSESLY
        MEEIKAPQSAPLPPSTAPSQPTPPLPPLPPKPKKRPLDRNAYIQYTKMRAVIRDLRPHFLEVLKTPEFRNCKAANEIRERIKLLQDMYI+MMATTSESLY
Subjt:  MEEIKAPQSAPLPPSTAPSQPTPPLPPLPPKPKKRPLDRNAYIQYTKMRAVIRDLRPHFLEVLKTPEFRNCKAANEIRERIKLLQDMYIMMMATTSESLY

Query:  IEKTSNVLDGQSLSVDNQDQRSREQHHDGKQGGKSSTKSYESNHPSSHAPEKHGANDGQTSGTYIVGGSAFGWNFIAFTGTEPVYYGVTKEEFRKKNPIV
        IEKTS VLDGQSLSVDNQDQRSREQHHDGKQGGKSSTKSYESNHPSSHAPEK GANDGQTSGTYIVGGSAFGWNFIAFTGTEPVYYGVTKEEFR+KNPIV
Subjt:  IEKTSNVLDGQSLSVDNQDQRSREQHHDGKQGGKSSTKSYESNHPSSHAPEKHGANDGQTSGTYIVGGSAFGWNFIAFTGTEPVYYGVTKEEFRKKNPIV

Query:  SSES
        SSES
Subjt:  SSES

TrEMBL top hits

e value

%identity

Alignment

A0A0A0K7F0 Uncharacterized protein

7.3e-70

74.15

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Query:  MEEIKAPQSAPLPPSTAPSQPTPPLPPLPPKPKKRPLDRNAYIQYTKMRAVIRDLRPHFLEVLKTPEFRNCKAANEIRERIKLLQDMYIMMMATTSESLY
        MEE KA        +TAPSQ    LPPLPPK KKRP DRNAYIQ+TKMR VIRDLRPHFLEV+KTP+FRNCKAA EIRERIK+LQD+Y MMMA TSE+LY
Subjt:  MEEIKAPQSAPLPPSTAPSQPTPPLPPLPPKPKKRPLDRNAYIQYTKMRAVIRDLRPHFLEVLKTPEFRNCKAANEIRERIKLLQDMYIMMMATTSESLY

Query:  IEKT-SNVLDGQSLSVDNQDQRSREQHHDGKQGGKSSTKSYESNHPSSHAPEKHGANDGQTSGTYIVGGSAFGWNFIAFTGTEPVYYGVTKEEFRKKNPI
        IEKT SNVLDG           +REQHHDG  G KSSTKSYESN+PSS+APEK  ANDGQ SG+Y+VGGSAFGWNFIAFTGTEPVYYG+TKE FR+KNPI
Subjt:  IEKT-SNVLDGQSLSVDNQDQRSREQHHDGKQGGKSSTKSYESNHPSSHAPEKHGANDGQTSGTYIVGGSAFGWNFIAFTGTEPVYYGVTKEEFRKKNPI

Query:  VSSES
         SSES
Subjt:  VSSES

A0A1S3C7F7 uncharacterized protein LOC103497729

5.9e-72

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Query:  MEEIKAPQSAPLPPSTAPSQPTPPLPPLPPKPKKRPLDRNAYIQYTKMRAVIRDLRPHFLEVLKTPEFRNCKAANEIRERIKLLQDMYIMMMATTSESLY
        MEE K    A +PP+TAPSQ    LPPLPPK KKRPLDRNAY+Q+TKMRAVIRDLRPHFLEV+KTP+FRNCKAA EIRERIK+LQDMY  MM+ TSE+LY
Subjt:  MEEIKAPQSAPLPPSTAPSQPTPPLPPLPPKPKKRPLDRNAYIQYTKMRAVIRDLRPHFLEVLKTPEFRNCKAANEIRERIKLLQDMYIMMMATTSESLY

Query:  IEKTSNVLDGQSLSVDNQDQRSREQHHDGKQGGKSSTKSYESNHPSSHAPEKHGANDGQTSGTYIVGGSAFGWNFIAFTGTEPVYYGVTKEEFRKKNPIV
        IEKT NVLDG           +REQHHDGK G KSSTKSYESN+PSS+APEK  ANDG  SG+Y+VGGSAFGWNFIAFTGTEPVYYG+TKE FR+KNPI 
Subjt:  IEKTSNVLDGQSLSVDNQDQRSREQHHDGKQGGKSSTKSYESNHPSSHAPEKHGANDGQTSGTYIVGGSAFGWNFIAFTGTEPVYYGVTKEEFRKKNPIV

Query:  SSES
        SSES
Subjt:  SSES

A0A6J1DSC5 uncharacterized protein LOC111023072

3.9e-71

73.66

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Query:  MEEIKAPQSAPLPPSTAPSQPTPPLPPLPPKPKKRPLDRNAYIQYTKMRAVIRDLRPHFLEVLKTPEFRNCKAANEIRERIKLLQDMYIMMMATTSESLY
        MEEIK   S P P +TAPS PT PLPPLPPK KKRPLDR+ ++QY+KMRAVI+DLRPHF+EVLK P+FRNCKAANEIRERIKLLQDMY +MMA+T+E+LY
Subjt:  MEEIKAPQSAPLPPSTAPSQPTPPLPPLPPKPKKRPLDRNAYIQYTKMRAVIRDLRPHFLEVLKTPEFRNCKAANEIRERIKLLQDMYIMMMATTSESLY

Query:  IEKTSNVLDGQSLSVDNQD-QRSREQHHDGKQGGKSSTKSYESNHPSSHAPEKHGANDGQTSGTYIVGGSAFGWNFIAFTGTEPVYYGVTKEEFRKKNPI
        IEKT+N+LDGQSLSVDNQD +R RE HHD K G KSS +SYESN+      EK   NDG +SG YIVGGSAFGWNFI F G EPVYYGVTKE +R+KNPI
Subjt:  IEKTSNVLDGQSLSVDNQD-QRSREQHHDGKQGGKSSTKSYESNHPSSHAPEKHGANDGQTSGTYIVGGSAFGWNFIAFTGTEPVYYGVTKEEFRKKNPI

Query:  VSSES
        VSSES
Subjt:  VSSES

A0A6J1H517 uncharacterized protein LOC111460466

1.7e-106

100

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Query:  MEEIKAPQSAPLPPSTAPSQPTPPLPPLPPKPKKRPLDRNAYIQYTKMRAVIRDLRPHFLEVLKTPEFRNCKAANEIRERIKLLQDMYIMMMATTSESLY
        MEEIKAPQSAPLPPSTAPSQPTPPLPPLPPKPKKRPLDRNAYIQYTKMRAVIRDLRPHFLEVLKTPEFRNCKAANEIRERIKLLQDMYIMMMATTSESLY
Subjt:  MEEIKAPQSAPLPPSTAPSQPTPPLPPLPPKPKKRPLDRNAYIQYTKMRAVIRDLRPHFLEVLKTPEFRNCKAANEIRERIKLLQDMYIMMMATTSESLY

Query:  IEKTSNVLDGQSLSVDNQDQRSREQHHDGKQGGKSSTKSYESNHPSSHAPEKHGANDGQTSGTYIVGGSAFGWNFIAFTGTEPVYYGVTKEEFRKKNPIV
        IEKTSNVLDGQSLSVDNQDQRSREQHHDGKQGGKSSTKSYESNHPSSHAPEKHGANDGQTSGTYIVGGSAFGWNFIAFTGTEPVYYGVTKEEFRKKNPIV
Subjt:  IEKTSNVLDGQSLSVDNQDQRSREQHHDGKQGGKSSTKSYESNHPSSHAPEKHGANDGQTSGTYIVGGSAFGWNFIAFTGTEPVYYGVTKEEFRKKNPIV

Query:  SSES
        SSES
Subjt:  SSES

A0A6J1KWG6 uncharacterized protein LOC111499323

6.5e-103

97.06

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Query:  MEEIKAPQSAPLPPSTAPSQPTPPLPPLPPKPKKRPLDRNAYIQYTKMRAVIRDLRPHFLEVLKTPEFRNCKAANEIRERIKLLQDMYIMMMATTSESLY
        MEEIKA QSAPLPPSTAPSQPTPPLPPLPPKPKKRPLDRNAYIQYTKMRAVIRDLRPHFLEVLKTPEFRNCKAANEIRERIKLLQDMYI+MMATTSESLY
Subjt:  MEEIKAPQSAPLPPSTAPSQPTPPLPPLPPKPKKRPLDRNAYIQYTKMRAVIRDLRPHFLEVLKTPEFRNCKAANEIRERIKLLQDMYIMMMATTSESLY

Query:  IEKTSNVLDGQSLSVDNQDQRSREQHHDGKQGGKSSTKSYESNHPSSHAPEKHGANDGQTSGTYIVGGSAFGWNFIAFTGTEPVYYGVTKEEFRKKNPIV
        IEKTSNVLDGQS+SVDNQDQRSREQ+HDGKQGGKSSTKSYESNHPSSHAPEK GANDGQTSGTYIVGGSAFGWNFIAFTGTEPVYYGVTKEEFR+KNPIV
Subjt:  IEKTSNVLDGQSLSVDNQDQRSREQHHDGKQGGKSSTKSYESNHPSSHAPEKHGANDGQTSGTYIVGGSAFGWNFIAFTGTEPVYYGVTKEEFRKKNPIV

Query:  SSES
        SSES
Subjt:  SSES

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT1G01730.1 unknown protein

1.1e-20

39.81

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Query:  QSAPLPPSTAPSQPTPPLPPLPPKP----KKRPLDRNAYIQ---YTKMRAVIRDLRPHFLEVLKTPEFRNCKAANEIRERIKLLQDMYIMMMATTSESLY
        +SA LP    P+Q T P   +   P    +KR L+ N  I+   Y KMR +++DLRPH LEVL+TP+ RN KA  EI+E++KL+  +Y  M+    ES  
Subjt:  QSAPLPPSTAPSQPTPPLPPLPPKP----KKRPLDRNAYIQ---YTKMRAVIRDLRPHFLEVLKTPEFRNCKAANEIRERIKLLQDMYIMMMATTSESLY

Query:  IEKTSNVLDGQSLSVDNQDQRSREQHHDGKQGGKSSTKSYESNHPSSHAPEKHGANDGQTSGTYIVGGSAFGWNFIAF--TGTEPVYYGVTKEEFRKKNP
         EKT+      SLS                 G  ++T +  ++   S   EKH ++DG   G  +VGGSAFGWNFI     GTEPVY G++KEE+R  +P
Subjt:  IEKTSNVLDGQSLSVDNQDQRSREQHHDGKQGGKSSTKSYESNHPSSHAPEKHGANDGQTSGTYIVGGSAFGWNFIAF--TGTEPVYYGVTKEEFRKKNP

Query:  IVSSES
        I+  E+
Subjt:  IVSSES

Sequences

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CDS sequence

Show/hide CDS sequence

mRNA sequence

Show/hide mRNA sequence

ATGGAGGAAATCAAAGCGCCACAGTCCGCGCCACTTCCTCCAAGCACAGCTCCATCTCAACCCACTCCGCCATTGCCTCCTCTTCCTCCCAAGCCCAAGAAGAGGCCACT
CGACAGAAATGCTTATATCCAATATACAAAGATGCGCGCTGTTATTAGAGATCTTCGTCCTCATTTTCTCGAGGTTTTGAAGACTCCCGAGTTTCGCAATTGCAAGGCAG
CCAATGAAATTCGAGAAAGAATAAAGCTTCTACAGGACATGTATATAATGATGATGGCAACAACTTCAGAATCTCTTTACATCGAAAAGACTAGCAACGTGCTCGATGGT
CAGTCCTTATCAGTTGATAATCAAGATCAACGATCCCGGGAGCAACACCATGATGGTAAACAGGGGGGCAAGTCATCTACAAAATCTTATGAAAGTAACCACCCTTCAAG
TCACGCCCCCGAAAAACATGGAGCAAATGATGGCCAGACATCTGGAACCTATATTGTTGGCGGATCGGCATTTGGCTGGAACTTCATCGCCTTCACAGGTACCGAACCGG
TATATTATGGAGTTACAAAGGAAGAATTTCGGAAAAAAAATCCCATTGTTTCATCAGAGTCATGATCTGGAACACTTAGAAAAGTAGTATGCTGGGGAAATCTTCTTTGT
TATGGTAAGTTTAGAAGAGCATTCAATAGATGAAATAGCTTCCTTCTATTTCTAGTGTGACTATACAATGTAGAAGTTTTTAAGTATGAAGATATTAACACGAGCTTCCT
TTATCTAATACCTCTGATGATGGGGTTTGGGGTCTCTGTTGAGACAATTCCTGAGATTTGTAAATTTTATTAATCCTGATAATTTTATGTAGTCAGCAGATATTATTCAA
GTCCAAATTAGAAGATATTGCTTGTTTTGATTCATTATGTATCGTCGTCAGCCTCATAGTTTTAAAACGCGACTAAAGAGAGGTTTCACTCTTATAAGGACCCCTCTTTG
GAGCTAGCGTCCTTACCAGTACACTGCCTAGTAGTATCTACCTCTGATACCATTTGTAACTGTTAAAGCCCAC

Protein sequence

Show/hide protein sequence

MEEIKAPQSAPLPPSTAPSQPTPPLPPLPPKPKKRPLDRNAYIQYTKMRAVIRDLRPHFLEVLKTPEFRNCKAANEIRERIKLLQDMYIMMMATTSESLYIEKTSNVLDG
QSLSVDNQDQRSREQHHDGKQGGKSSTKSYESNHPSSHAPEKHGANDGQTSGTYIVGGSAFGWNFIAFTGTEPVYYGVTKEEFRKKNPIVSSES

CmoCh17G004050 (gene) of Cucurbita moschata (Rifu) v1 genome