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CmoCh17G004080 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh17G004080
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
DescriptionBeta-amylase
Genome locationCmo_Chr17:2708732..2709750
RNA-Seq ExpressionCmoCh17G004080
SyntenyCmoCh17G004080
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG7013734.1 hypothetical protein SDJN02_23901 [Cucurbita argyrosperma subsp. argyrosperma]2.5e-0671.74Show/hide
Query:  MLLDSSPVGTRLIDGKLSLEYLAFRRK----------EFGAEICRL
        MLLDSSP G RLIDGKLSLEYLAFRRK          EFGAEICR+
Subjt:  MLLDSSPVGTRLIDGKLSLEYLAFRRK----------EFGAEICRL

KAG7026001.1 hypothetical protein SDJN02_12499 [Cucurbita argyrosperma subsp. argyrosperma]1.7e-0737.72Show/hide
Query:  MLLDSSPVGTRLIDGKLSLEYLAFRRKEF--------------GAEICRLGEER-------------------------KMKYDVLESTLSCSICKEVHV
        M LDSSPV   L+DGK  L+YLAFR K F              G    R G E                          K+K DVL+ T SC +C+EV  
Subjt:  MLLDSSPVGTRLIDGKLSLEYLAFRRKEF--------------GAEICRLGEER-------------------------KMKYDVLESTLSCSICKEVHV

Query:  HSSSGNIWSVLSGR
        HS SG IW+ LSG+
Subjt:  HSSSGNIWSVLSGR

XP_022964581.1 beta-amylase 7-like isoform X2 [Cucurbita moschata]4.0e-0441.3Show/hide
Query:  MLLDSSPVGTRLIDGKLSLEYLAFRRKEF--------------------GAEIC--RLGEER----KMKYDVLESTLSCSICKEVHVHSSSG
        M LDSSPV   L+DGK  L+YLAFR K F                      E C    G  R    K+K DVL+ T SC +C+EV  HS SG
Subjt:  MLLDSSPVGTRLIDGKLSLEYLAFRRKEF--------------------GAEIC--RLGEER----KMKYDVLESTLSCSICKEVHVHSSSG

XP_022964582.1 beta-amylase 7-like isoform X3 [Cucurbita moschata]8.1e-0544.19Show/hide
Query:  MLLDSSPVGTRLIDGKLSLEYLAFRRKEF--------------GAEIC--RLGEER----KMKYDVLESTLSCSICKEVHVHSSSG
        M LDSSPV   L+DGK  L+YLAFR K F                E C    G  R    K+K DVL+ T SC +C+EV  HS SG
Subjt:  MLLDSSPVGTRLIDGKLSLEYLAFRRKEF--------------GAEIC--RLGEER----KMKYDVLESTLSCSICKEVHVHSSSG

XP_022964593.1 beta-amylase 7-like isoform X6 [Cucurbita moschata]4.0e-0441.3Show/hide
Query:  MLLDSSPVGTRLIDGKLSLEYLAFRRKEF--------------------GAEIC--RLGEER----KMKYDVLESTLSCSICKEVHVHSSSG
        M LDSSPV   L+DGK  L+YLAFR K F                      E C    G  R    K+K DVL+ T SC +C+EV  HS SG
Subjt:  MLLDSSPVGTRLIDGKLSLEYLAFRRKEF--------------------GAEIC--RLGEER----KMKYDVLESTLSCSICKEVHVHSSSG

TrEMBL top hitse value%identityAlignment
A0A6J1HI67 Beta-amylase3.9e-0544.19Show/hide
Query:  MLLDSSPVGTRLIDGKLSLEYLAFRRKEF--------------GAEIC--RLGEER----KMKYDVLESTLSCSICKEVHVHSSSG
        M LDSSPV   L+DGK  L+YLAFR K F                E C    G  R    K+K DVL+ T SC +C+EV  HS SG
Subjt:  MLLDSSPVGTRLIDGKLSLEYLAFRRKEF--------------GAEIC--RLGEER----KMKYDVLESTLSCSICKEVHVHSSSG

A0A6J1HJC8 Beta-amylase2.0e-0441.3Show/hide
Query:  MLLDSSPVGTRLIDGKLSLEYLAFRRKEF--------------------GAEIC--RLGEER----KMKYDVLESTLSCSICKEVHVHSSSG
        M LDSSPV   L+DGK  L+YLAFR K F                      E C    G  R    K+K DVL+ T SC +C+EV  HS SG
Subjt:  MLLDSSPVGTRLIDGKLSLEYLAFRRKEF--------------------GAEIC--RLGEER----KMKYDVLESTLSCSICKEVHVHSSSG

A0A6J1HL80 Beta-amylase2.0e-0441.3Show/hide
Query:  MLLDSSPVGTRLIDGKLSLEYLAFRRKEF--------------------GAEIC--RLGEER----KMKYDVLESTLSCSICKEVHVHSSSG
        M LDSSPV   L+DGK  L+YLAFR K F                      E C    G  R    K+K DVL+ T SC +C+EV  HS SG
Subjt:  MLLDSSPVGTRLIDGKLSLEYLAFRRKEF--------------------GAEIC--RLGEER----KMKYDVLESTLSCSICKEVHVHSSSG

A0A6J1HLB5 Beta-amylase2.0e-0441.3Show/hide
Query:  MLLDSSPVGTRLIDGKLSLEYLAFRRKEF--------------------GAEIC--RLGEER----KMKYDVLESTLSCSICKEVHVHSSSG
        M LDSSPV   L+DGK  L+YLAFR K F                      E C    G  R    K+K DVL+ T SC +C+EV  HS SG
Subjt:  MLLDSSPVGTRLIDGKLSLEYLAFRRKEF--------------------GAEIC--RLGEER----KMKYDVLESTLSCSICKEVHVHSSSG

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCTCCTTGATTCTTCTCCGGTCGGAACCAGACTGATCGACGGAAAGTTGTCTCTGGAGTACCTTGCCTTTCGCCGGAAAGAATTTGGTGCTGAGATTTGTAGACTTGG
CGAAGAAAGGAAAATGAAATATGACGTTCTTGAGAGTACTCTTTCCTGCTCGATTTGCAAAGAAGTTCATGTACATAGTAGTAGTGGTAACATATGGAGCGTGTTATCTG
GACGTTAA
mRNA sequenceShow/hide mRNA sequence
TACAAAACACGTGTGACCCACACGGGAACACGTCCCATCCACCCGCTTCACGTTCACTCGGTTATACCCTTACACGCCTCCTTCGTGCGTGCCAATTTTCCCAATTCTGA
ATCACCTCCACACGCGCGCGCGTGCGAAACCCTTCCCCTCGCATGCTCGCACGCTTGAGAATCAATCTCTCTCTCTCCCTCTCCCTCTCTCCTCTGTCGCCGGACTAGCG
AGTCGCCGGTGAATTCTAGAATCCATGCTCCTTGATTCTTCTCCGGTCGGAACCAGACTGATCGACGGAAAGTTGTCTCTGGAGTACCTTGCCTTTCGCCGGAAAGAATT
TGGTGCTGAGATTTGTAGACTTGGCGAAGAAAGGAAAATGAAATATGACGTTCTTGAGAGTACTCTTTCCTGCTCGATTTGCAAAGAAGTTCATGTACATAGTAGTAGTG
GTAACATATGGAGCGTGTTATCTGGACGTTAA
Protein sequenceShow/hide protein sequence
MLLDSSPVGTRLIDGKLSLEYLAFRRKEFGAEICRLGEERKMKYDVLESTLSCSICKEVHVHSSSGNIWSVLSGR