; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

CmoCh17G004580 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh17G004580
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
Descriptionagamous-like MADS-box protein AGL62
Genome locationCmo_Chr17:3230566..3231929
RNA-Seq ExpressionCmoCh17G004580
SyntenyCmoCh17G004580
Gene Ontology termsGO:0005634 - nucleus (cellular component)
GO:0003677 - DNA binding (molecular function)
GO:0046983 - protein dimerization activity (molecular function)
InterPro domainsIPR002100 - Transcription factor, MADS-box
IPR036879 - Transcription factor, MADS-box superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6574839.1 Agamous-like MADS-box protein AGL62, partial [Cucurbita argyrosperma subsp. sororia]2.0e-2974.07Show/hide
Query:  KTPGRQKIEIKKLEKKSSKLVTFSKRRARLFKKAGELSRLPSLASLRTIRF------FCFAHPNVDVLLDRYLTRNLSPLKPAENFVPVTEFNRDFADLV
        KT GRQKIEIKKLEKKSSK VTFSKRRA LFKKAGELS L   A +  I F      FCF HP+VDVLLDRYLT NLSP KPAE++VPV EFNRDFADLV
Subjt:  KTPGRQKIEIKKLEKKSSKLVTFSKRRARLFKKAGELSRLPSLASLRTIRF------FCFAHPNVDVLLDRYLTRNLSPLKPAENFVPVTEFNRDFADLV

Query:  LKFEVAKK
        L+FE  KK
Subjt:  LKFEVAKK

KAG7013413.1 Agamous-like MADS-box protein AGL62, partial [Cucurbita argyrosperma subsp. argyrosperma]2.0e-2974.07Show/hide
Query:  KTPGRQKIEIKKLEKKSSKLVTFSKRRARLFKKAGELSRLPSLASLRTIRF------FCFAHPNVDVLLDRYLTRNLSPLKPAENFVPVTEFNRDFADLV
        KT GRQKIEIKKLEKKSSK VTFSKRRA LFKKAGELS L   A +  I F      FCF HP+VDVLLDRYLT NLSP KPAE++VPV EFNRDFADLV
Subjt:  KTPGRQKIEIKKLEKKSSKLVTFSKRRARLFKKAGELSRLPSLASLRTIRF------FCFAHPNVDVLLDRYLTRNLSPLKPAENFVPVTEFNRDFADLV

Query:  LKFEVAKK
        L+FE  KK
Subjt:  LKFEVAKK

XP_022959356.1 agamous-like MADS-box protein AGL62 [Cucurbita moschata]2.0e-2974.07Show/hide
Query:  KTPGRQKIEIKKLEKKSSKLVTFSKRRARLFKKAGELSRLPSLASLRTIRF------FCFAHPNVDVLLDRYLTRNLSPLKPAENFVPVTEFNRDFADLV
        KT GRQKIEIKKLEKKSSK VTFSKRRA LFKKAGELS L   A +  I F      FCF HP+VDVLLDRYLT NLSP KPAE++VPV EFNRDFADLV
Subjt:  KTPGRQKIEIKKLEKKSSKLVTFSKRRARLFKKAGELSRLPSLASLRTIRF------FCFAHPNVDVLLDRYLTRNLSPLKPAENFVPVTEFNRDFADLV

Query:  LKFEVAKK
        L+FE  KK
Subjt:  LKFEVAKK

XP_023006252.1 agamous-like MADS-box protein AGL62 [Cucurbita maxima]5.3e-3075Show/hide
Query:  KTPGRQKIEIKKLEKKSSKLVTFSKRRARLFKKAGELSRLPSLASLRTIRF------FCFAHPNVDVLLDRYLTRNLSPLKPAENFVPVTEFNRDFADLV
        KT GRQKIEIKKLEKKSSK VTFSKRRA LFKKAGELS L   A +  I F      FCF HPNVDVLLDRYLT NLSP KPAE++VPV EFNRDFADLV
Subjt:  KTPGRQKIEIKKLEKKSSKLVTFSKRRARLFKKAGELSRLPSLASLRTIRF------FCFAHPNVDVLLDRYLTRNLSPLKPAENFVPVTEFNRDFADLV

Query:  LKFEVAKK
        L+FE  KK
Subjt:  LKFEVAKK

XP_023549141.1 agamous-like MADS-box protein AGL62 [Cucurbita pepo subsp. pepo]2.0e-2974.07Show/hide
Query:  KTPGRQKIEIKKLEKKSSKLVTFSKRRARLFKKAGELSRLPSLASLRTIRF------FCFAHPNVDVLLDRYLTRNLSPLKPAENFVPVTEFNRDFADLV
        KT GRQKIEIKKLEKKSSK VTFSKRRA LFKKAGELS L   A +  I F      FCF HP+VDVLLDRYLT NLSP KPAE++VPV EFNRDFADLV
Subjt:  KTPGRQKIEIKKLEKKSSKLVTFSKRRARLFKKAGELSRLPSLASLRTIRF------FCFAHPNVDVLLDRYLTRNLSPLKPAENFVPVTEFNRDFADLV

Query:  LKFEVAKK
        L+FE  KK
Subjt:  LKFEVAKK

TrEMBL top hitse value%identityAlignment
A0A0A0LE01 MADS-box domain-containing protein1.4e-2871.3Show/hide
Query:  KTPGRQKIEIKKLEKKSSKLVTFSKRRARLFKKAGELSRLPSLASLRTIRF------FCFAHPNVDVLLDRYLTRNLSPLKPAENFVPVTEFNRDFADLV
        KT GRQKIEIKKLEKKSSK VTFSKRRA LFKKAGELS L   A +  I F      FCF HP+VDVLLDRYLT NLSP KPAE+++PV EFNRDFAD  
Subjt:  KTPGRQKIEIKKLEKKSSKLVTFSKRRARLFKKAGELSRLPSLASLRTIRF------FCFAHPNVDVLLDRYLTRNLSPLKPAENFVPVTEFNRDFADLV

Query:  LKFEVAKK
        L+FE  KK
Subjt:  LKFEVAKK

A0A1S3CRI8 agamous-like MADS-box protein AGL621.1e-2871.3Show/hide
Query:  KTPGRQKIEIKKLEKKSSKLVTFSKRRARLFKKAGELSRLPSLASLRTIRF------FCFAHPNVDVLLDRYLTRNLSPLKPAENFVPVTEFNRDFADLV
        KT GRQKIEIKKLEKKSSK VTFSKRRA LFKKAGELS L   A +  I F      FCF HP+VDVLLDRYLT NLSP KPAE+++PV EFNRDFAD  
Subjt:  KTPGRQKIEIKKLEKKSSKLVTFSKRRARLFKKAGELSRLPSLASLRTIRF------FCFAHPNVDVLLDRYLTRNLSPLKPAENFVPVTEFNRDFADLV

Query:  LKFEVAKK
        L+FE  KK
Subjt:  LKFEVAKK

A0A5D3D807 Agamous-like MADS-box protein AGL621.1e-2871.3Show/hide
Query:  KTPGRQKIEIKKLEKKSSKLVTFSKRRARLFKKAGELSRLPSLASLRTIRF------FCFAHPNVDVLLDRYLTRNLSPLKPAENFVPVTEFNRDFADLV
        KT GRQKIEIKKLEKKSSK VTFSKRRA LFKKAGELS L   A +  I F      FCF HP+VDVLLDRYLT NLSP KPAE+++PV EFNRDFAD  
Subjt:  KTPGRQKIEIKKLEKKSSKLVTFSKRRARLFKKAGELSRLPSLASLRTIRF------FCFAHPNVDVLLDRYLTRNLSPLKPAENFVPVTEFNRDFADLV

Query:  LKFEVAKK
        L+FE  KK
Subjt:  LKFEVAKK

A0A6J1H4M6 agamous-like MADS-box protein AGL629.8e-3074.07Show/hide
Query:  KTPGRQKIEIKKLEKKSSKLVTFSKRRARLFKKAGELSRLPSLASLRTIRF------FCFAHPNVDVLLDRYLTRNLSPLKPAENFVPVTEFNRDFADLV
        KT GRQKIEIKKLEKKSSK VTFSKRRA LFKKAGELS L   A +  I F      FCF HP+VDVLLDRYLT NLSP KPAE++VPV EFNRDFADLV
Subjt:  KTPGRQKIEIKKLEKKSSKLVTFSKRRARLFKKAGELSRLPSLASLRTIRF------FCFAHPNVDVLLDRYLTRNLSPLKPAENFVPVTEFNRDFADLV

Query:  LKFEVAKK
        L+FE  KK
Subjt:  LKFEVAKK

A0A6J1KVC9 agamous-like MADS-box protein AGL622.6e-3075Show/hide
Query:  KTPGRQKIEIKKLEKKSSKLVTFSKRRARLFKKAGELSRLPSLASLRTIRF------FCFAHPNVDVLLDRYLTRNLSPLKPAENFVPVTEFNRDFADLV
        KT GRQKIEIKKLEKKSSK VTFSKRRA LFKKAGELS L   A +  I F      FCF HPNVDVLLDRYLT NLSP KPAE++VPV EFNRDFADLV
Subjt:  KTPGRQKIEIKKLEKKSSKLVTFSKRRARLFKKAGELSRLPSLASLRTIRF------FCFAHPNVDVLLDRYLTRNLSPLKPAENFVPVTEFNRDFADLV

Query:  LKFEVAKK
        L+FE  KK
Subjt:  LKFEVAKK

SwissProt top hitse value%identityAlignment
O80807 Agamous-like MADS-box protein AGL232.4e-0939.13Show/hide
Query:  VVAKTPGRQKIEIKKLEKKSSKLVTFSKRRARLFKKAGELSRLPSLASLRTIRF------FCFAHPNVDVLLDRY----LTRNLSPLKPAENFVPVTEFN
        +V KT GR+K+EI K+ K+S+  VTFSKR+A LFKKA E   L   A +  I F      F F HPNVDVLLD +    +  N + L  +   + V   N
Subjt:  VVAKTPGRQKIEIKKLEKKSSKLVTFSKRRARLFKKAGELSRLPSLASLRTIRF------FCFAHPNVDVLLDRY----LTRNLSPLKPAENFVPVTEFN

Query:  RDFADLVLKFEVAKK
        + + ++  + E  +K
Subjt:  RDFADLVLKFEVAKK

Q4PSU4 Agamous-like MADS-box protein AGL612.4e-0940.37Show/hide
Query:  GRQKIEIKKLEKKSSKLVTFSKRRARLFKKAGELSRLPSLASLRTIRF------FCFAHPNVDVLLDRYLTRNLSPLKPAENF----VPVTEFNRDFADL
        GRQKI + K++K+S + VTFSKRRA LFKKA EL  L   A +  I F      F F HP+V+ +LDRY++RN   L  ++          E N     +
Subjt:  GRQKIEIKKLEKKSSKLVTFSKRRARLFKKAGELSRLPSLASLRTIRF------FCFAHPNVDVLLDRYLTRNLSPLKPAENF----VPVTEFNRDFADL

Query:  VLKFEVAKK
        + + E  KK
Subjt:  VLKFEVAKK

Q9ATE5 MADS-box protein FBP244.7e-0536.45Show/hide
Query:  GRQKIEIKKLEKKSSKLVTFSKRRARLFKKAGELSRLPSLASLRTIRF--------FCFAHPNVDVLLDRYLTRNLSPLKPAENFV----PVTEFNRDFA
        GR KIE+K++E K+S+ VTFSKRRA L KK  ELS L   A +  I F        +C    ++  ++ RYL    + L   +N V     V +  RD  
Subjt:  GRQKIEIKKLEKKSSKLVTFSKRRARLFKKAGELSRLPSLASLRTIRF--------FCFAHPNVDVLLDRYLTRNLSPLKPAENFV----PVTEFNRDFA

Query:  DLVLKFE
        +L L  +
Subjt:  DLVLKFE

Q9FKK2 Agamous-like MADS-box protein AGL621.4e-0943.68Show/hide
Query:  VVAKTPGRQKIEIKKLEKKSSKLVTFSKRRARLFKKAGELSRLPSLASLRTI-----RFFCFAHPNVDVLLDRYLTRNLSPLKPAEN
        +V K+ GRQKIE+ K++ +S+  VTFSKRR+ LFKKA EL  L        +     + F F HPNVD ++DR++  N  PL P ++
Subjt:  VVAKTPGRQKIEIKKLEKKSSKLVTFSKRRARLFKKAGELSRLPSLASLRTI-----RFFCFAHPNVDVLLDRYLTRNLSPLKPAEN

Q9LMM8 Agamous-like MADS-box protein AGL281.2e-0546.67Show/hide
Query:  KTPGRQKIEIKKLEKKSSKLVTFSKRRARLFKKAGELSRLPSLASLRTIRF------FCFAHPNVDVLLDRYLTR
        K  GR+KIE+ K+  +S+  VTFSKRR+ LFKK  EL  L   A +  I F      + F HPNV+ LLD  L R
Subjt:  KTPGRQKIEIKKLEKKSSKLVTFSKRRARLFKKAGELSRLPSLASLRTIRF------FCFAHPNVDVLLDRYLTR

Arabidopsis top hitse value%identityAlignment
AT1G17310.1 MADS-box transcription factor family protein4.2e-0946.84Show/hide
Query:  TPGRQKIEIKKLEKKSSKLVTFSKRRARLFKKAGELS-----RLPSLASLRTIRFFCFAHPNVDVLLDRYLTRNLSPLK
        T GRQKIEIKK+E+++ + VTFSKRR  LFKK+ ELS     ++  +   +  R + F H  VD L+D+YL +  SP+K
Subjt:  TPGRQKIEIKKLEKKSSKLVTFSKRRARLFKKAGELS-----RLPSLASLRTIRFFCFAHPNVDVLLDRYLTRNLSPLK

AT1G65360.1 AGAMOUS-like 231.7e-1039.13Show/hide
Query:  VVAKTPGRQKIEIKKLEKKSSKLVTFSKRRARLFKKAGELSRLPSLASLRTIRF------FCFAHPNVDVLLDRY----LTRNLSPLKPAENFVPVTEFN
        +V KT GR+K+EI K+ K+S+  VTFSKR+A LFKKA E   L   A +  I F      F F HPNVDVLLD +    +  N + L  +   + V   N
Subjt:  VVAKTPGRQKIEIKKLEKKSSKLVTFSKRRARLFKKAGELSRLPSLASLRTIRF------FCFAHPNVDVLLDRY----LTRNLSPLKPAENFVPVTEFN

Query:  RDFADLVLKFEVAKK
        + + ++  + E  +K
Subjt:  RDFADLVLKFEVAKK

AT2G24840.1 AGAMOUS-like 611.7e-1040.37Show/hide
Query:  GRQKIEIKKLEKKSSKLVTFSKRRARLFKKAGELSRLPSLASLRTIRF------FCFAHPNVDVLLDRYLTRNLSPLKPAENF----VPVTEFNRDFADL
        GRQKI + K++K+S + VTFSKRRA LFKKA EL  L   A +  I F      F F HP+V+ +LDRY++RN   L  ++          E N     +
Subjt:  GRQKIEIKKLEKKSSKLVTFSKRRARLFKKAGELSRLPSLASLRTIRF------FCFAHPNVDVLLDRYLTRNLSPLKPAENF----VPVTEFNRDFADL

Query:  VLKFEVAKK
        + + E  KK
Subjt:  VLKFEVAKK

AT4G36590.1 MADS-box transcription factor family protein3.2e-0946.15Show/hide
Query:  VVAKTPGRQKIEIKKLEKKSSKLVTFSKRRARLFKKAGELSRLPSLASLRTI-----RFFCFAHPNVDVLLDRYLTRN
        +V  T GRQKIE+KK+E +S+  VTFSKRR  LFKKA EL  L     L  +     + F F HP+V  L+ R+   N
Subjt:  VVAKTPGRQKIEIKKLEKKSSKLVTFSKRRARLFKKAGELSRLPSLASLRTI-----RFFCFAHPNVDVLLDRYLTRN

AT5G60440.1 AGAMOUS-like 621.0e-1043.68Show/hide
Query:  VVAKTPGRQKIEIKKLEKKSSKLVTFSKRRARLFKKAGELSRLPSLASLRTI-----RFFCFAHPNVDVLLDRYLTRNLSPLKPAEN
        +V K+ GRQKIE+ K++ +S+  VTFSKRR+ LFKKA EL  L        +     + F F HPNVD ++DR++  N  PL P ++
Subjt:  VVAKTPGRQKIEIKKLEKKSSKLVTFSKRRARLFKKAGELSRLPSLASLRTI-----RFFCFAHPNVDVLLDRYLTRNLSPLKPAEN


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGGTTGAAAGTGGAAACCAGTTCGATGGAGCTGCTTGATCTCAGTAGTGTCGTTGCCAAAACTCCTGGCCGTCAAAAGATCGAAATCAAGAAGTTAGAGAAGAAGAG
CAGCAAACTAGTGACCTTTTCGAAGCGTCGTGCCCGACTTTTCAAGAAGGCCGGTGAGCTTTCTAGGTTGCCATCATTGGCTTCTCTCCGAACGATAAGGTTTTTTTGTT
TTGCACATCCGAATGTTGACGTGCTTTTGGATCGGTATTTGACTCGAAATTTGTCGCCGCTGAAGCCGGCGGAGAATTTCGTTCCTGTAACTGAATTTAATCGCGATTTC
GCCGATTTAGTGTTGAAGTTCGAAGTGGCGAAGAAGTGA
mRNA sequenceShow/hide mRNA sequence
ATGAGGTTGAAAGTGGAAACCAGTTCGATGGAGCTGCTTGATCTCAGTAGTGTCGTTGCCAAAACTCCTGGCCGTCAAAAGATCGAAATCAAGAAGTTAGAGAAGAAGAG
CAGCAAACTAGTGACCTTTTCGAAGCGTCGTGCCCGACTTTTCAAGAAGGCCGGTGAGCTTTCTAGGTTGCCATCATTGGCTTCTCTCCGAACGATAAGGTTTTTTTGTT
TTGCACATCCGAATGTTGACGTGCTTTTGGATCGGTATTTGACTCGAAATTTGTCGCCGCTGAAGCCGGCGGAGAATTTCGTTCCTGTAACTGAATTTAATCGCGATTTC
GCCGATTTAGTGTTGAAGTTCGAAGTGGCGAAGAAGTGA
Protein sequenceShow/hide protein sequence
MRLKVETSSMELLDLSSVVAKTPGRQKIEIKKLEKKSSKLVTFSKRRARLFKKAGELSRLPSLASLRTIRFFCFAHPNVDVLLDRYLTRNLSPLKPAENFVPVTEFNRDF
ADLVLKFEVAKK