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CmoCh17G004840 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh17G004840
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
DescriptionAuxin-responsive family protein
Genome locationCmo_Chr17:3733231..3733527
RNA-Seq ExpressionCmoCh17G004840
SyntenyCmoCh17G004840
Gene Ontology termsGO:0009733 - response to auxin (biological process)
InterPro domainsIPR003676 - Small auxin-up RNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
ADN34225.1 auxin-responsive family protein [Cucumis melo subsp. melo]5.2e-3274.26Show/hide
Query:  MGSGERSQGSFKSVPKGCLAIKVGHEHEEKQRFI-------------LLKEAEDEYGFHQKGTITLPCHVHQFRFVQALIDQETSF---HHHHLYGPCFR
        MGSGERSQ SFK VPKGCLAIKVGHE EEKQRF+             LLKEAEDEYGF QKGTIT+PCHV QFR+VQALID+ETSF   HHHHLY PCFR
Subjt:  MGSGERSQGSFKSVPKGCLAIKVGHEHEEKQRFI-------------LLKEAEDEYGFHQKGTITLPCHVHQFRFVQALIDQETSF---HHHHLYGPCFR

Query:  V
        V
Subjt:  V

KAE8646784.1 hypothetical protein Csa_005698 [Cucumis sativus]1.2e-3174.75Show/hide
Query:  MGSGERSQGSFKSVPKGCLAIKVGHEHEEKQRFI-------------LLKEAEDEYGFHQKGTITLPCHVHQFRFVQALIDQETSFH--HHHLYGPCFR
        MGSGERSQ SFK VPKGCLAIKVGHE EEKQRF+             LLKEAEDEYGF QKGTIT+PCHV QFR+VQALID+ETSFH  HHHLY PCFR
Subjt:  MGSGERSQGSFKSVPKGCLAIKVGHEHEEKQRFI-------------LLKEAEDEYGFHQKGTITLPCHVHQFRFVQALIDQETSFH--HHHLYGPCFR

KAG6575258.1 Auxin-responsive protein SAUR32, partial [Cucurbita argyrosperma subsp. sororia]3.0e-4086.73Show/hide
Query:  MGSGERSQGSFKSVPKGCLAIKVGHEHEEKQRFI-------------LLKEAEDEYGFHQKGTITLPCHVHQFRFVQALIDQETSFHHHHLYGPCFRV
        MGSGERSQGSFKSVPKGCLAIKVGHEHEEKQRFI             LLKEAEDEYGFHQKGTITLPCHVHQFRFVQALIDQETSFHHHHLYGPCFRV
Subjt:  MGSGERSQGSFKSVPKGCLAIKVGHEHEEKQRFI-------------LLKEAEDEYGFHQKGTITLPCHVHQFRFVQALIDQETSFHHHHLYGPCFRV

XP_011656853.1 auxin-responsive protein SAUR32 [Cucumis sativus]1.2e-3174.75Show/hide
Query:  MGSGERSQGSFKSVPKGCLAIKVGHEHEEKQRFI-------------LLKEAEDEYGFHQKGTITLPCHVHQFRFVQALIDQETSFH--HHHLYGPCFR
        MGSGERSQ SFK VPKGCLAIKVGHE EEKQRF+             LLKEAEDEYGF QKGTIT+PCHV QFR+VQALID+ETSFH  HHHLY PCFR
Subjt:  MGSGERSQGSFKSVPKGCLAIKVGHEHEEKQRFI-------------LLKEAEDEYGFHQKGTITLPCHVHQFRFVQALIDQETSFH--HHHLYGPCFR

XP_038876020.1 auxin-responsive protein SAUR32 [Benincasa hispida]1.0e-3275.25Show/hide
Query:  MGSGERSQGSFKSVPKGCLAIKVGHEHEEKQRFI-------------LLKEAEDEYGFHQKGTITLPCHVHQFRFVQALIDQETSFHH---HHLYGPCFR
        MGSGERSQG+FK VPKGCLAIKVGHE EEKQRFI             LLKEAE+EYGF QKGTIT+PCHV QFR+VQALIDQETSFHH   HHLY PCFR
Subjt:  MGSGERSQGSFKSVPKGCLAIKVGHEHEEKQRFI-------------LLKEAEDEYGFHQKGTITLPCHVHQFRFVQALIDQETSFHH---HHLYGPCFR

Query:  V
        V
Subjt:  V

TrEMBL top hitse value%identityAlignment
A0A0A0KFM7 Uncharacterized protein5.6e-3274.75Show/hide
Query:  MGSGERSQGSFKSVPKGCLAIKVGHEHEEKQRFI-------------LLKEAEDEYGFHQKGTITLPCHVHQFRFVQALIDQETSFH--HHHLYGPCFR
        MGSGERSQ SFK VPKGCLAIKVGHE EEKQRF+             LLKEAEDEYGF QKGTIT+PCHV QFR+VQALID+ETSFH  HHHLY PCFR
Subjt:  MGSGERSQGSFKSVPKGCLAIKVGHEHEEKQRFI-------------LLKEAEDEYGFHQKGTITLPCHVHQFRFVQALIDQETSFH--HHHLYGPCFR

A0A1S3CBD9 auxin-responsive protein SAUR321.6e-3173.27Show/hide
Query:  MGSGERSQGSFKSVPKGCLAIKVGHEHEEKQRFI-------------LLKEAEDEYGFHQKGTITLPCHVHQFRFVQALIDQETSF---HHHHLYGPCFR
        MGSGE SQ SFK VPKGCLAIKVGHE EEKQRF+             LLKEAEDEYGF QKGTIT+PCHV QFR+VQALID+ETSF   HHHHLY PCFR
Subjt:  MGSGERSQGSFKSVPKGCLAIKVGHEHEEKQRFI-------------LLKEAEDEYGFHQKGTITLPCHVHQFRFVQALIDQETSF---HHHHLYGPCFR

Query:  V
        V
Subjt:  V

A0A5A7TA19 Auxin-responsive family protein2.5e-3274.26Show/hide
Query:  MGSGERSQGSFKSVPKGCLAIKVGHEHEEKQRFI-------------LLKEAEDEYGFHQKGTITLPCHVHQFRFVQALIDQETSF---HHHHLYGPCFR
        MGSGERSQ SFK VPKGCLAIKVGHE EEKQRF+             LLKEAEDEYGF QKGTIT+PCHV QFR+VQALID+ETSF   HHHHLY PCFR
Subjt:  MGSGERSQGSFKSVPKGCLAIKVGHEHEEKQRFI-------------LLKEAEDEYGFHQKGTITLPCHVHQFRFVQALIDQETSF---HHHHLYGPCFR

Query:  V
        V
Subjt:  V

A0A6J1KS93 auxin-responsive protein SAUR32-like4.3e-2468Show/hide
Query:  MGSGER-SQGSFK-SVPKGCLAIKVGHEHEEKQRFI-------------LLKEAEDEYGFHQKGTITLPCHVHQFRFVQALIDQETSFHHHHLYGPCFRV
        M S ER SQGS K  VPKG LAIKVGHE EEKQRF+             LLKEAE+EYGF QKGTIT+PCHV QFR+VQALIDQE SFH  HL+ PCFRV
Subjt:  MGSGER-SQGSFK-SVPKGCLAIKVGHEHEEKQRFI-------------LLKEAEDEYGFHQKGTITLPCHVHQFRFVQALIDQETSFHHHHLYGPCFRV

E5GCM6 Auxin-responsive family protein2.5e-3274.26Show/hide
Query:  MGSGERSQGSFKSVPKGCLAIKVGHEHEEKQRFI-------------LLKEAEDEYGFHQKGTITLPCHVHQFRFVQALIDQETSF---HHHHLYGPCFR
        MGSGERSQ SFK VPKGCLAIKVGHE EEKQRF+             LLKEAEDEYGF QKGTIT+PCHV QFR+VQALID+ETSF   HHHHLY PCFR
Subjt:  MGSGERSQGSFKSVPKGCLAIKVGHEHEEKQRFI-------------LLKEAEDEYGFHQKGTITLPCHVHQFRFVQALIDQETSF---HHHHLYGPCFR

Query:  V
        V
Subjt:  V

SwissProt top hitse value%identityAlignment
Q9ZUZ3 Auxin-responsive protein SAUR328.6e-2255.14Show/hide
Query:  MGSGERSQGSF----------KSVPKGCLAIKVGHEHEEKQRFI-------------LLKEAEDEYGFHQKGTITLPCHVHQFRFVQALIDQETSFH---
        MG+GE++  SF          K VPKGCLAIKVG + EE+QRFI             LLKEAEDEYGF QKGTIT+PCHV +FR+VQALID E S +   
Subjt:  MGSGERSQGSF----------KSVPKGCLAIKVGHEHEEKQRFI-------------LLKEAEDEYGFHQKGTITLPCHVHQFRFVQALIDQETSFH---

Query:  -HHHLYG
         HHH +G
Subjt:  -HHHLYG

Arabidopsis top hitse value%identityAlignment
AT2G46690.1 SAUR-like auxin-responsive protein family6.1e-2355.14Show/hide
Query:  MGSGERSQGSF----------KSVPKGCLAIKVGHEHEEKQRFI-------------LLKEAEDEYGFHQKGTITLPCHVHQFRFVQALIDQETSFH---
        MG+GE++  SF          K VPKGCLAIKVG + EE+QRFI             LLKEAEDEYGF QKGTIT+PCHV +FR+VQALID E S +   
Subjt:  MGSGERSQGSF----------KSVPKGCLAIKVGHEHEEKQRFI-------------LLKEAEDEYGFHQKGTITLPCHVHQFRFVQALIDQETSFH---

Query:  -HHHLYG
         HHH +G
Subjt:  -HHHLYG

AT3G60690.1 SAUR-like auxin-responsive protein family1.4e-0636.99Show/hide
Query:  VPKGCLAIKVGHEHEEKQRFI-------------LLKEAEDEYGFHQKGTITLPCHVHQFRFVQALIDQETSF
        VPKG  A+ +G +  + QR +             LL+EAE+E+GF Q+G IT+PC    F+ VQ  I+  + F
Subjt:  VPKGCLAIKVGHEHEEKQRFI-------------LLKEAEDEYGFHQKGTITLPCHVHQFRFVQALIDQETSF

AT3G61900.1 SAUR-like auxin-responsive protein family7.0e-1949.5Show/hide
Query:  MGSGER----------------SQGSFKSVPKGCLAIKVGHEHEEKQRFI-------------LLKEAEDEYGFHQKGTITLPCHVHQFRFVQALIDQET
        MGSGE+                S+   K VPKGCLAIKVG + EEKQRF+             LL+EAE+EYGF QKGTIT+PCHV  FR+VQ +I++E 
Subjt:  MGSGER----------------SQGSFKSVPKGCLAIKVGHEHEEKQRFI-------------LLKEAEDEYGFHQKGTITLPCHVHQFRFVQALIDQET

Query:  S
        S
Subjt:  S

AT4G00880.1 SAUR-like auxin-responsive protein family1.6e-1852.04Show/hide
Query:  KSVPKGCLAIKVGHEHEEKQRFI-------------LLKEAEDEYGFHQKGTITLPCHVHQFRFVQALIDQE-TSF-------HHHHLYG---PCFRV
        + VPKGCLA+KVG + EE++RF+             LLKEAE+E+GF QKGTIT+PCHV +FR+VQ LID+E T F       HHHH +     CFRV
Subjt:  KSVPKGCLAIKVGHEHEEKQRFI-------------LLKEAEDEYGFHQKGTITLPCHVHQFRFVQALIDQE-TSF-------HHHHLYG---PCFRV

AT5G53590.1 SAUR-like auxin-responsive protein family2.0e-1349.37Show/hide
Query:  VPKGCLAIKVGHEHEEK--QRFI-------------LLKEAEDEYGFHQKGTITLPCHVHQFRFVQALIDQETSFHHHH
        VPKGC+AI VGHE +E+   RF+             LLKEAE EYGF   G IT+PC V +F+ VQ +ID+ET   H H
Subjt:  VPKGCLAIKVGHEHEEK--QRFI-------------LLKEAEDEYGFHQKGTITLPCHVHQFRFVQALIDQETSFHHHH


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGTAGTGGGGAGAGAAGCCAAGGGAGCTTCAAGAGCGTCCCAAAGGGCTGTTTGGCTATCAAAGTTGGGCATGAACATGAAGAGAAGCAGCGATTTATACTACTCAA
GGAAGCCGAAGACGAATATGGGTTTCACCAAAAGGGAACCATCACTCTTCCTTGTCATGTCCACCAATTTAGGTTTGTTCAAGCCTTGATTGATCAAGAAACCTCCTTTC
ACCACCACCATCTCTACGGTCCTTGCTTTAGGGTTTGA
mRNA sequenceShow/hide mRNA sequence
ATGGGTAGTGGGGAGAGAAGCCAAGGGAGCTTCAAGAGCGTCCCAAAGGGCTGTTTGGCTATCAAAGTTGGGCATGAACATGAAGAGAAGCAGCGATTTATACTACTCAA
GGAAGCCGAAGACGAATATGGGTTTCACCAAAAGGGAACCATCACTCTTCCTTGTCATGTCCACCAATTTAGGTTTGTTCAAGCCTTGATTGATCAAGAAACCTCCTTTC
ACCACCACCATCTCTACGGTCCTTGCTTTAGGGTTTGA
Protein sequenceShow/hide protein sequence
MGSGERSQGSFKSVPKGCLAIKVGHEHEEKQRFILLKEAEDEYGFHQKGTITLPCHVHQFRFVQALIDQETSFHHHHLYGPCFRV