CuGenDBv2

Gene ID	CmoCh17G004860
Organism	Cucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
Description	Fiber protein fb11
Genome location	Cmo_Chr17:3768913..3772642
RNA-Seq Expression	CmoCh17G004860
Synteny	CmoCh17G004860
Gene Ontology terms	GO:0016021 - integral component of membrane (cellular component)
InterPro domains	NA

Homology

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GenBank top hits

e value

%identity

Alignment

XP_008459762.1 PREDICTED: uncharacterized protein LOC103498799 [Cucumis melo]

1.6e-22

93.65

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Query:  MPVMEKLKMFVVQEPVVVASCLIGGIGLFLPAVVRPILDSYEASKQAPQPVLSDVVASMTGKK
        MPVMEKLKMFVVQEPVV ASC+IGGIGLFLPA VRPILDSYEASKQ PQPVLSDVVASMTGKK
Subjt:  MPVMEKLKMFVVQEPVVVASCLIGGIGLFLPAVVRPILDSYEASKQAPQPVLSDVVASMTGKK

XP_022958795.1 uncharacterized protein LOC111459960 [Cucurbita moschata]

2.9e-24

100

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Query:  MPVMEKLKMFVVQEPVVVASCLIGGIGLFLPAVVRPILDSYEASKQAPQPVLSDVVASMTGKK
        MPVMEKLKMFVVQEPVVVASCLIGGIGLFLPAVVRPILDSYEASKQAPQPVLSDVVASMTGKK
Subjt:  MPVMEKLKMFVVQEPVVVASCLIGGIGLFLPAVVRPILDSYEASKQAPQPVLSDVVASMTGKK

XP_022959928.1 uncharacterized protein LOC111460833 [Cucurbita moschata]

1.2e-22

93.65

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Query:  MPVMEKLKMFVVQEPVVVASCLIGGIGLFLPAVVRPILDSYEASKQAPQPVLSDVVASMTGKK
        MPVMEKLKMFVVQEPVV ASC+IGGIGLFLPAVVRPILDS+EASKQ PQPVLSDVVASMTGKK
Subjt:  MPVMEKLKMFVVQEPVVVASCLIGGIGLFLPAVVRPILDSYEASKQAPQPVLSDVVASMTGKK

XP_023006679.1 uncharacterized protein LOC111499335 [Cucurbita maxima]

3.8e-24

98.41

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Query:  MPVMEKLKMFVVQEPVVVASCLIGGIGLFLPAVVRPILDSYEASKQAPQPVLSDVVASMTGKK
        MPVMEKLKMFVVQEPVVVASCLIGG+GLFLPAVVRPILDSYEASKQAPQPVLSDVVASMTGKK
Subjt:  MPVMEKLKMFVVQEPVVVASCLIGGIGLFLPAVVRPILDSYEASKQAPQPVLSDVVASMTGKK

XP_038875998.1 uncharacterized protein LOC120068338 [Benincasa hispida]

9.5e-23

95.24

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Query:  MPVMEKLKMFVVQEPVVVASCLIGGIGLFLPAVVRPILDSYEASKQAPQPVLSDVVASMTGKK
        MPVMEKLKMFVVQEPVV ASCLIGGIGLFLPA VRPILDSYEASKQ PQPVLSDVVASMTGKK
Subjt:  MPVMEKLKMFVVQEPVVVASCLIGGIGLFLPAVVRPILDSYEASKQAPQPVLSDVVASMTGKK

TrEMBL top hits

e value

%identity

Alignment

A0A6J1H4H1 uncharacterized protein LOC111459960

1.4e-24

100

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Query:  MPVMEKLKMFVVQEPVVVASCLIGGIGLFLPAVVRPILDSYEASKQAPQPVLSDVVASMTGKK
        MPVMEKLKMFVVQEPVVVASCLIGGIGLFLPAVVRPILDSYEASKQAPQPVLSDVVASMTGKK
Subjt:  MPVMEKLKMFVVQEPVVVASCLIGGIGLFLPAVVRPILDSYEASKQAPQPVLSDVVASMTGKK

A0A6J1H9H3 uncharacterized protein LOC111460833

6.0e-23

93.65

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Query:  MPVMEKLKMFVVQEPVVVASCLIGGIGLFLPAVVRPILDSYEASKQAPQPVLSDVVASMTGKK
        MPVMEKLKMFVVQEPVV ASC+IGGIGLFLPAVVRPILDS+EASKQ PQPVLSDVVASMTGKK
Subjt:  MPVMEKLKMFVVQEPVVVASCLIGGIGLFLPAVVRPILDSYEASKQAPQPVLSDVVASMTGKK

A0A6J1L1A7 uncharacterized protein LOC111498190

6.0e-23

93.65

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Query:  MPVMEKLKMFVVQEPVVVASCLIGGIGLFLPAVVRPILDSYEASKQAPQPVLSDVVASMTGKK
        MPVMEKLKMFVVQEPVV ASC+IGGIGLFLPAVVRPILDS+EASKQ PQPVLSDVVASMTGKK
Subjt:  MPVMEKLKMFVVQEPVVVASCLIGGIGLFLPAVVRPILDSYEASKQAPQPVLSDVVASMTGKK

A0A6J1L2U6 uncharacterized protein LOC111499335

1.9e-24

98.41

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Query:  MPVMEKLKMFVVQEPVVVASCLIGGIGLFLPAVVRPILDSYEASKQAPQPVLSDVVASMTGKK
        MPVMEKLKMFVVQEPVVVASCLIGG+GLFLPAVVRPILDSYEASKQAPQPVLSDVVASMTGKK
Subjt:  MPVMEKLKMFVVQEPVVVASCLIGGIGLFLPAVVRPILDSYEASKQAPQPVLSDVVASMTGKK

E5GCM8 Fiber protein fb11

7.8e-23

93.65

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Query:  MPVMEKLKMFVVQEPVVVASCLIGGIGLFLPAVVRPILDSYEASKQAPQPVLSDVVASMTGKK
        MPVMEKLKMFVVQEPVV ASC+IGGIGLFLPA VRPILDSYEASKQ PQPVLSDVVASMTGKK
Subjt:  MPVMEKLKMFVVQEPVVVASCLIGGIGLFLPAVVRPILDSYEASKQAPQPVLSDVVASMTGKK

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT2G46540.1 unknown protein

8.5e-22

79.37

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Query:  MPVMEKLKMFVVQEPVVVASCLIGGIGLFLPAVVRPILDSYEASKQAPQPVLSDVVASMTGKK
        MPVMEKL+MFV QEPVV ASCLIGG+GLFLPAVVRPILDS EASKQ   P L+DV+A +TGKK
Subjt:  MPVMEKLKMFVVQEPVVVASCLIGGIGLFLPAVVRPILDSYEASKQAPQPVLSDVVASMTGKK

Sequences

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CDS sequence

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ATGCCGGTCATGGAGAAGCTGAAGATGTTCGTAGTTCAAGAGCCCGTAGTGGTTGCATCTTGTCTAATCGGAGGAATTGGTCTTTTCCTTCCTGCCGTTGTAAGACCAAT
TCTGGATTCATACGAAGCATCTAAGCAAGCTCCTCAGCCTGTATTAAGTGATGTGGTTGCGAGTATGACTGGAAAGAAATGA

mRNA sequence

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GGTCCATCCAAAAATCGCAAATCTTTTCACTCATAAACTTTGGACTTCGAAGAATCAAGCCACGAACGTTCAGTTCAGGAAGCGAATCAGACGAAACCTTCAAGAAAATG
CCGGTCATGGAGAAGCTGAAGATGTTCGTAGTTCAAGAGCCCGTAGTGGTTGCATCTTGTCTAATCGGAGGAATTGGTCTTTTCCTTCCTGCCGTTGTAAGACCAATTCT
GGATTCATACGAAGCATCTAAGCAAGCTCCTCAGCCTGTATTAAGTGATGTGGTTGCGAGTATGACTGGAAAGAAATGAGGATGATTGGTATCGGTGACATAAGAAGGTT
GTTCTTGATGGATCAATTATCATTCTCTTCTGCCATAAAATAATTCTGTACAATCTTTTTAAACGTCATGGTTGATAGCAATAGTTATTGCTACACATTCACTTGTTTTA
TGCCCAATGCATAAGACTGATTTTCAAGATATTTCAGCTTTTAGCACTCCGTTTGAAGCCCTATCAAAACTTGGTTTCACCATAAATTGAGTTCTAAAAACTCGTTTGAT
TTTCTTTTCTTGTTTGTTTCAAACGAGGGATCGAACCGTTGACTTTTGGGATGGTAAGTTGATAATTGGCAAAAGTCAAATTGAGCGTACCTCATTATATACGTGAGGAA
AGAACTAAAACACGAATCACTTCGTCCTTGTTTCTAATGTTCTTTCATTTTGGTTGTTTTTGTTTGAATTAATTATTTTATTCACATAGTTTTTCGGG

Protein sequence

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MPVMEKLKMFVVQEPVVVASCLIGGIGLFLPAVVRPILDSYEASKQAPQPVLSDVVASMTGKK

CmoCh17G004860 (gene) of Cucurbita moschata (Rifu) v1 genome