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CmoCh17G005100 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh17G005100
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
DescriptionS-protein homolog
Genome locationCmo_Chr17:4868027..4874722
RNA-Seq ExpressionCmoCh17G005100
SyntenyCmoCh17G005100
Gene Ontology termsGO:0060320 - rejection of self pollen (biological process)
GO:0005576 - extracellular region (cellular component)
GO:0016021 - integral component of membrane (cellular component)
InterPro domainsIPR010264 - Plant self-incompatibility S1


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0026247.1 pumilio-like protein 15-like [Cucumis melo var. makuwa]1.3e-2265.71Show/hide
Query:  VWLLLGFNNFGLVVHCQSKDDDLGIHNLDNRGDEYKWNFKENIWRTTLFWCKFEKSSAYISFDSFWPESR
        + ++ G +N  L+VHCQSKDDDLG H+L NRGD+Y+WNFKEN W+TTLFWCK EK +A++SF+SFWPES+
Subjt:  VWLLLGFNNFGLVVHCQSKDDDLGIHNLDNRGDEYKWNFKENIWRTTLFWCKFEKSSAYISFDSFWPESR

XP_008458117.1 PREDICTED: uncharacterized protein LOC103497646 [Cucumis melo]3.9e-2264.29Show/hide
Query:  VWLLLGFNNFGLVVHCQSKDDDLGIHNLDNRGDEYKWNFKENIWRTTLFWCKFEKSSAYISFDSFWPESR
        + ++ G +N  L+VHCQSKDDDLG H+L NRGD+Y+WNFKEN W+TTLFWCK EK + ++SF+SFWPES+
Subjt:  VWLLLGFNNFGLVVHCQSKDDDLGIHNLDNRGDEYKWNFKENIWRTTLFWCKFEKSSAYISFDSFWPESR

XP_022933268.1 S-protein homolog 1-like [Cucurbita moschata]2.5e-2162.03Show/hide
Query:  GFNNFGLVVHCQSKDDDLGIHNLDNRGDEYKWNFKENIWRTTLFWCKFEKSSAYISFDSFWPESRKI---DGSVKGLVG
        G +N GL+VHCQSKDDDLG H+L N GD+Y+WNFK N W TTLFWCK E   AY+SF+SFWPES+ +   D    G VG
Subjt:  GFNNFGLVVHCQSKDDDLGIHNLDNRGDEYKWNFKENIWRTTLFWCKFEKSSAYISFDSFWPESRKI---DGSVKGLVG

XP_023549419.1 S-protein homolog 1-like [Cucurbita pepo subsp. pepo]5.7e-2680.3Show/hide
Query:  GFNNFGLVVHCQSKDDDLGIHNLDNRGDEYKWNFKENIWRTTLFWCKFEKSSAYISFDSFWPESRK
        G  N GL+VHCQSKD+DLG HNL NRGDEY+WNFKENIW TTLFWC+FEKS AY+SFDSFWPES+K
Subjt:  GFNNFGLVVHCQSKDDDLGIHNLDNRGDEYKWNFKENIWRTTLFWCKFEKSSAYISFDSFWPESRK

XP_038896423.1 S-protein homolog 1-like [Benincasa hispida]1.7e-2269.01Show/hide
Query:  VWLLLGFNNFGLVVHCQSKDDDLGIHNLDNRGDEYKWNFKENIWRTTLFWCKFEKSSAYISFDSFWPESRK
        V ++ G +N  +VVHCQSKDDDLG H+L NRGD+Y+WNFKEN W TTLFWCK EK +AY+SF+SFWPES K
Subjt:  VWLLLGFNNFGLVVHCQSKDDDLGIHNLDNRGDEYKWNFKENIWRTTLFWCKFEKSSAYISFDSFWPESRK

TrEMBL top hitse value%identityAlignment
A0A1S3C8C8 S-protein homolog1.9e-2264.29Show/hide
Query:  VWLLLGFNNFGLVVHCQSKDDDLGIHNLDNRGDEYKWNFKENIWRTTLFWCKFEKSSAYISFDSFWPESR
        + ++ G +N  L+VHCQSKDDDLG H+L NRGD+Y+WNFKEN W+TTLFWCK EK + ++SF+SFWPES+
Subjt:  VWLLLGFNNFGLVVHCQSKDDDLGIHNLDNRGDEYKWNFKENIWRTTLFWCKFEKSSAYISFDSFWPESR

A0A5A7SNG3 S-protein homolog6.4e-2365.71Show/hide
Query:  VWLLLGFNNFGLVVHCQSKDDDLGIHNLDNRGDEYKWNFKENIWRTTLFWCKFEKSSAYISFDSFWPESR
        + ++ G +N  L+VHCQSKDDDLG H+L NRGD+Y+WNFKEN W+TTLFWCK EK +A++SF+SFWPES+
Subjt:  VWLLLGFNNFGLVVHCQSKDDDLGIHNLDNRGDEYKWNFKENIWRTTLFWCKFEKSSAYISFDSFWPESR

A0A6J1F497 S-protein homolog1.2e-2162.03Show/hide
Query:  GFNNFGLVVHCQSKDDDLGIHNLDNRGDEYKWNFKENIWRTTLFWCKFEKSSAYISFDSFWPESRKI---DGSVKGLVG
        G +N GL+VHCQSKDDDLG H+L N GD+Y+WNFK N W TTLFWCK E   AY+SF+SFWPES+ +   D    G VG
Subjt:  GFNNFGLVVHCQSKDDDLGIHNLDNRGDEYKWNFKENIWRTTLFWCKFEKSSAYISFDSFWPESRKI---DGSVKGLVG

A0A6J1F4F3 S-protein homolog1.0e-2065.67Show/hide
Query:  GFNNFGLVVHCQSKDDDLGIHNLDNRGDEYKWNFKENIWRTTLFWCKFEKSSAYISFDSFWPESRKI
        G +  GL+VHCQSKDDDLG H+L N GD+Y+WNFK N W TTLFWCK E   AY+SF+SFWPES+ +
Subjt:  GFNNFGLVVHCQSKDDDLGIHNLDNRGDEYKWNFKENIWRTTLFWCKFEKSSAYISFDSFWPESRKI

A0A6J1F4G4 S-protein homolog6.0e-2160.76Show/hide
Query:  GFNNFGLVVHCQSKDDDLGIHNLDNRGDEYKWNFKENIWRTTLFWCKFEKSSAYISFDSFWPESRKI---DGSVKGLVG
        G +  GL+VHCQSKDDDLG H+L N GD+Y+WNFK N W TTLFWCK E   AY+SF+SFWPES+ +   D    G VG
Subjt:  GFNNFGLVVHCQSKDDDLGIHNLDNRGDEYKWNFKENIWRTTLFWCKFEKSSAYISFDSFWPESRKI---DGSVKGLVG

SwissProt top hitse value%identityAlignment
F4JLS0 S-protein homolog 14.3e-0842.11Show/hide
Query:  LVVHCQSKDDDLGIHNLDNRGDEYKWNFKENIWRTTLFWCKFEKSSAYISFDSFWPE
        L +HC+SK+DDLG  NL  R + + WNF EN+  +T FWC   K + +++ + FW +
Subjt:  LVVHCQSKDDDLGIHNLDNRGDEYKWNFKENIWRTTLFWCKFEKSSAYISFDSFWPE

O23020 S-protein homolog 53.3e-0846.3Show/hide
Query:  LVVHCQSKDDDLGIHNLDNRGDEYKWNFKENIWRTTLFWCKFEKSSAYISFDSF
        L +HC+SK DDLGIH +  +  EY + F+ N+W++TLF+C F+  S + SFD +
Subjt:  LVVHCQSKDDDLGIHNLDNRGDEYKWNFKENIWRTTLFWCKFEKSSAYISFDSF

P0DN93 S-protein homolog 297.6e-0544.44Show/hide
Query:  LVVHCQSKDDDLGIHNLDNRGDEYKWNFKENIWRTTLFWCKFEKSSAYISFDSF
        L + C+SKDDDLG H L   G  + W F+ + +RTTLF CKF  ++    FD++
Subjt:  LVVHCQSKDDDLGIHNLDNRGDEYKWNFKENIWRTTLFWCKFEKSSAYISFDSF

Q2HQ46 S-protein homolog 742.1e-0742.11Show/hide
Query:  LVVHCQSKDDDLGIHNLDNRGDEYKWNFKENIWRTTLFWCKFEKSSAYISFDSFWPE
        L +HC+SK++DLG  NL    D + WNF EN+  +TLFWC   K   +++   FW +
Subjt:  LVVHCQSKDDDLGIHNLDNRGDEYKWNFKENIWRTTLFWCKFEKSSAYISFDSFWPE

Q9FI84 S-protein homolog 271.5e-0543.75Show/hide
Query:  NNFGLVVHCQSKDDDLGIHNLDNRGDEYKWNFKENIWRTTLFWCKFEK
        N++ L +HC+SKDDDLG H +   G+ Y W F  N   +TL++C F +
Subjt:  NNFGLVVHCQSKDDDLGIHNLDNRGDEYKWNFKENIWRTTLFWCKFEK

Arabidopsis top hitse value%identityAlignment
AT1G04645.1 Plant self-incompatibility protein S1 family2.3e-0946.3Show/hide
Query:  LVVHCQSKDDDLGIHNLDNRGDEYKWNFKENIWRTTLFWCKFEKSSAYISFDSF
        L +HC+SK DDLGIH +  +  EY + F+ N+W++TLF+C F+  S + SFD +
Subjt:  LVVHCQSKDDDLGIHNLDNRGDEYKWNFKENIWRTTLFWCKFEKSSAYISFDSF

AT4G16295.1 S-protein homologue 13.1e-0942.11Show/hide
Query:  LVVHCQSKDDDLGIHNLDNRGDEYKWNFKENIWRTTLFWCKFEKSSAYISFDSFWPE
        L +HC+SK+DDLG  NL  R + + WNF EN+  +T FWC   K + +++ + FW +
Subjt:  LVVHCQSKDDDLGIHNLDNRGDEYKWNFKENIWRTTLFWCKFEKSSAYISFDSFWPE

AT4G29035.1 Plant self-incompatibility protein S1 family1.5e-0842.11Show/hide
Query:  LVVHCQSKDDDLGIHNLDNRGDEYKWNFKENIWRTTLFWCKFEKSSAYISFDSFWPE
        L +HC+SK++DLG  NL    D + WNF EN+  +TLFWC   K   +++   FW +
Subjt:  LVVHCQSKDDDLGIHNLDNRGDEYKWNFKENIWRTTLFWCKFEKSSAYISFDSFWPE

AT5G04347.1 Plant self-incompatibility protein S1 family7.5e-0845.9Show/hide
Query:  NNFGLVVHCQSKDDDLGIHNLDNRGDEYKWNFKENIWRTTLFWCKFEKS---SAYISFDSF
        NN  L V C+SKDD+LG H L   G   K NF +N+WR TLFWC   K      +++FD++
Subjt:  NNFGLVVHCQSKDDDLGIHNLDNRGDEYKWNFKENIWRTTLFWCKFEKS---SAYISFDSF

AT5G04350.1 Plant self-incompatibility protein S1 family9.8e-0838.89Show/hide
Query:  LVVHCQSKDDDLGIHNLDNRGDEYKWNFKENIWRTTLFWCK------FEKSSAYISFDSFWPESRKIDGSVK
        L VHC+SKDDDLG H L   G +Y++ F +NIW+TT F C+      F+    ++++++ W  S+ ++ S K
Subjt:  LVVHCQSKDDDLGIHNLDNRGDEYKWNFKENIWRTTLFWCK------FEKSSAYISFDSFWPESRKIDGSVK


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTGTGGCTTTTGTTGGGGTTCAACAACTTCGGGTTGGTTGTGCATTGCCAGTCAAAAGACGATGATTTAGGAATTCACAATTTAGATAATCGTGGAGATGAGTACAA
ATGGAACTTTAAGGAAAACATTTGGAGAACGACCCTTTTTTGGTGCAAATTTGAGAAGTCGAGTGCCTATATCTCTTTTGATAGCTTTTGGCCTGAGTCAAGAAAAATAG
ATGGCTCCGTAAAAGGTTTGGTCGGGGCTCAGCTCAAGGTTGAGTCTGAGAAGATCAATATACAACCACCAATTTCCACGTATTACATTCTTTTGGTTAAAGATATATTT
GATCAAGTAAGGATGTGA
mRNA sequenceShow/hide mRNA sequence
ATGGTGTGGCTTTTGTTGGGGTTCAACAACTTCGGGTTGGTTGTGCATTGCCAGTCAAAAGACGATGATTTAGGAATTCACAATTTAGATAATCGTGGAGATGAGTACAA
ATGGAACTTTAAGGAAAACATTTGGAGAACGACCCTTTTTTGGTGCAAATTTGAGAAGTCGAGTGCCTATATCTCTTTTGATAGCTTTTGGCCTGAGTCAAGAAAAATAG
ATGGCTCCGTAAAAGGTTTGGTCGGGGCTCAGCTCAAGGTTGAGTCTGAGAAGATCAATATACAACCACCAATTTCCACGTATTACATTCTTTTGGTTAAAGATATATTT
GATCAAGTAAGGATGTGA
Protein sequenceShow/hide protein sequence
MVWLLLGFNNFGLVVHCQSKDDDLGIHNLDNRGDEYKWNFKENIWRTTLFWCKFEKSSAYISFDSFWPESRKIDGSVKGLVGAQLKVESEKINIQPPISTYYILLVKDIF
DQVRM