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CmoCh17G005160 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh17G005160
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
DescriptionDNA-directed RNA polymerase subunit alpha
Genome locationCmo_Chr17:4992369..4992959
RNA-Seq ExpressionCmoCh17G005160
SyntenyCmoCh17G005160
Gene Ontology termsGO:0006351 - transcription, DNA-templated (biological process)
GO:0009507 - chloroplast (cellular component)
GO:0003677 - DNA binding (molecular function)
GO:0003899 - DNA-directed 5'-3' RNA polymerase activity (molecular function)
GO:0046983 - protein dimerization activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
VDD65849.1 unnamed protein product [Brassica oleracea]5.3e-1473.33Show/hide
Query:  MVREKIRGVSTRTLKWKCVESRADSKRLDYGGFILSPLIKEGASEYYGHCDAKSFAWRNR
        MVREK++ VSTRTL+WKCVESR DSKRL YG FILSPL+K  +S +  HCDAKSF WRNR
Subjt:  MVREKIRGVSTRTLKWKCVESRADSKRLDYGGFILSPLIKEGASEYYGHCDAKSFAWRNR

YP_004072494.1 RNA polymerase alpha subunit [Corynocarpus laevigatus]8.7e-0944.76Show/hide
Query:  MVREKIRGVSTRTLKWKCVESRADSKRLDYGGFILSPLIKEGASEYYGHCDAKSFAWRNRGVLALAGWMRNCSRHHLTTFFLWKSIERNRAYTNAKEFAR
        MVREKIR VSTRTLKWKCVESRADSKRL YG FILSPL+K G ++  G    K+      G              + T   + +S+  +  + N KE   
Subjt:  MVREKIRGVSTRTLKWKCVESRADSKRLDYGGFILSPLIKEGASEYYGHCDAKSFAWRNRGVLALAGWMRNCSRHHLTTFFLWKSIERNRAYTNAKEFAR

Query:  RKLSY
        R   Y
Subjt:  RKLSY

YP_009318914.1 RNA polymerase alpha subunit [Eriocnema fulva]8.7e-0977.08Show/hide
Query:  MVREKIRGVSTRTLKWKCVESRADSKRLDYGGFILSPLIKEGASEYYG
        MVREK+R VSTRTL+WKCVESRADSKRLDYG FILSPL K+G ++  G
Subjt:  MVREKIRGVSTRTLKWKCVESRADSKRLDYGGFILSPLIKEGASEYYG

YP_009319253.1 RNA polymerase alpha subunit [Miconia dodecandra]8.7e-0977.08Show/hide
Query:  MVREKIRGVSTRTLKWKCVESRADSKRLDYGGFILSPLIKEGASEYYG
        MVREK+R VSTRTL+WKCVESRADSKRLDYG FILSPL K+G ++  G
Subjt:  MVREKIRGVSTRTLKWKCVESRADSKRLDYGGFILSPLIKEGASEYYG

YP_009456093.1 RNA polymerase alpha subunit [Momordica charantia]1.1e-0844.76Show/hide
Query:  MVREKIRGVSTRTLKWKCVESRADSKRLDYGGFILSPLIKEGASEYYGHCDAKSFAWRNRGVLALAGWMRNCSRHHLTTFFLWKSIERNRAYTNAKEFAR
        MVREKIR VSTRTLKWKCVESRADSKRL YG FILSPL+K G ++  G    K+      G              + T   + +S+  +    N KE   
Subjt:  MVREKIRGVSTRTLKWKCVESRADSKRLDYGGFILSPLIKEGASEYYGHCDAKSFAWRNRGVLALAGWMRNCSRHHLTTFFLWKSIERNRAYTNAKEFAR

Query:  RKLSY
        R   Y
Subjt:  RKLSY

TrEMBL top hitse value%identityAlignment
A0A0S2IF96 DNA-directed RNA polymerase subunit alpha5.5e-0945.71Show/hide
Query:  MVREKIRGVSTRTLKWKCVESRADSKRLDYGGFILSPLIKEGASEYYGHCDAKSFAWRNRGVLALAGWMRNCSRHHLTTFFLWKSIERNRAYTNAKEFAR
        MVREKIR VSTRTLKWKCVESRADSKRL YG FILSPLIK G ++  G    K+      G              + T   + +S+  +    N KE   
Subjt:  MVREKIRGVSTRTLKWKCVESRADSKRLDYGGFILSPLIKEGASEYYGHCDAKSFAWRNRGVLALAGWMRNCSRHHLTTFFLWKSIERNRAYTNAKEFAR

Query:  RKLSY
        R   Y
Subjt:  RKLSY

A0A1I9VUY0 DNA-directed RNA polymerase subunit alpha4.2e-0977.08Show/hide
Query:  MVREKIRGVSTRTLKWKCVESRADSKRLDYGGFILSPLIKEGASEYYG
        MVREK+R VSTRTL+WKCVESRADSKRLDYG FILSPL K+G ++  G
Subjt:  MVREKIRGVSTRTLKWKCVESRADSKRLDYGGFILSPLIKEGASEYYG

A0A1I9VVW9 DNA-directed RNA polymerase subunit alpha4.2e-0977.08Show/hide
Query:  MVREKIRGVSTRTLKWKCVESRADSKRLDYGGFILSPLIKEGASEYYG
        MVREK+R VSTRTL+WKCVESRADSKRLDYG FILSPL K+G ++  G
Subjt:  MVREKIRGVSTRTLKWKCVESRADSKRLDYGGFILSPLIKEGASEYYG

A0A3P6HIU4 Uncharacterized protein2.5e-1473.33Show/hide
Query:  MVREKIRGVSTRTLKWKCVESRADSKRLDYGGFILSPLIKEGASEYYGHCDAKSFAWRNR
        MVREK++ VSTRTL+WKCVESR DSKRL YG FILSPL+K  +S +  HCDAKSF WRNR
Subjt:  MVREKIRGVSTRTLKWKCVESRADSKRLDYGGFILSPLIKEGASEYYGHCDAKSFAWRNR

E5KUC8 DNA-directed RNA polymerase subunit alpha4.2e-0944.76Show/hide
Query:  MVREKIRGVSTRTLKWKCVESRADSKRLDYGGFILSPLIKEGASEYYGHCDAKSFAWRNRGVLALAGWMRNCSRHHLTTFFLWKSIERNRAYTNAKEFAR
        MVREKIR VSTRTLKWKCVESRADSKRL YG FILSPL+K G ++  G    K+      G              + T   + +S+  +  + N KE   
Subjt:  MVREKIRGVSTRTLKWKCVESRADSKRLDYGGFILSPLIKEGASEYYGHCDAKSFAWRNRGVLALAGWMRNCSRHHLTTFFLWKSIERNRAYTNAKEFAR

Query:  RKLSY
        R   Y
Subjt:  RKLSY

SwissProt top hitse value%identityAlignment
A4GYU3 DNA-directed RNA polymerase subunit alpha1.3e-1082.5Show/hide
Query:  MVREKIRGVSTRTLKWKCVESRADSKRLDYGGFILSPLIK
        MVREK+R +STRTL+WKCVESRADSKRL YG FILSPL+K
Subjt:  MVREKIRGVSTRTLKWKCVESRADSKRLDYGGFILSPLIK

Q09ME5 DNA-directed RNA polymerase subunit alpha2.1e-1082.5Show/hide
Query:  MVREKIRGVSTRTLKWKCVESRADSKRLDYGGFILSPLIK
        MVREK++ VSTRTL+WKCVESRADSKRL YG FILSPL+K
Subjt:  MVREKIRGVSTRTLKWKCVESRADSKRLDYGGFILSPLIK

Q14FC5 DNA-directed RNA polymerase subunit alpha1.3e-1082.5Show/hide
Query:  MVREKIRGVSTRTLKWKCVESRADSKRLDYGGFILSPLIK
        MVREK+R +STRTL+WKCVESRADSKRL YG FILSPL+K
Subjt:  MVREKIRGVSTRTLKWKCVESRADSKRLDYGGFILSPLIK

Q49KW6 DNA-directed RNA polymerase subunit alpha9.6e-1185Show/hide
Query:  MVREKIRGVSTRTLKWKCVESRADSKRLDYGGFILSPLIK
        MVREK+R VSTRTL+WKCVESRADSKRL YG FILSPL+K
Subjt:  MVREKIRGVSTRTLKWKCVESRADSKRLDYGGFILSPLIK

Q4VZK3 DNA-directed RNA polymerase subunit alpha2.5e-1190Show/hide
Query:  MVREKIRGVSTRTLKWKCVESRADSKRLDYGGFILSPLIK
        MVREKIR VSTRTLKWKCVESRADSKRL YG FILSPL+K
Subjt:  MVREKIRGVSTRTLKWKCVESRADSKRLDYGGFILSPLIK

Arabidopsis top hitse value%identityAlignment
ATCG00740.1 RNA polymerase subunit alpha1.3e-1077.5Show/hide
Query:  MVREKIRGVSTRTLKWKCVESRADSKRLDYGGFILSPLIK
        MVREK++ VSTRTL+WKCVES+ DSKRL YG FILSPL+K
Subjt:  MVREKIRGVSTRTLKWKCVESRADSKRLDYGGFILSPLIK


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTTCGAGAGAAAATCAGAGGAGTATCGACTCGGACACTAAAGTGGAAGTGTGTTGAATCAAGAGCAGACAGTAAGCGTCTTGATTATGGAGGCTTTATTCTGTCTCC
ACTTATTAAGGAAGGGGCAAGCGAATACTATGGGCATTGCGATGCGAAAAGCTTTGCTTGGAGAAATAGAGGGGTCCTGGCTCTGGCTGGATGGATGCGTAACTGCTCCA
GACATCATCTTACCACCTTCTTTCTGTGGAAATCGATCGAGAGGAATCGCGCGTATACAAACGCCAAAGAATTTGCAAGACGCAAGTTATCCTATAGACGCTATAGACGC
TATATTCATGCCTGTTCGAAATACGAATCATAG
mRNA sequenceShow/hide mRNA sequence
ATGGTTCGAGAGAAAATCAGAGGAGTATCGACTCGGACACTAAAGTGGAAGTGTGTTGAATCAAGAGCAGACAGTAAGCGTCTTGATTATGGAGGCTTTATTCTGTCTCC
ACTTATTAAGGAAGGGGCAAGCGAATACTATGGGCATTGCGATGCGAAAAGCTTTGCTTGGAGAAATAGAGGGGTCCTGGCTCTGGCTGGATGGATGCGTAACTGCTCCA
GACATCATCTTACCACCTTCTTTCTGTGGAAATCGATCGAGAGGAATCGCGCGTATACAAACGCCAAAGAATTTGCAAGACGCAAGTTATCCTATAGACGCTATAGACGC
TATATTCATGCCTGTTCGAAATACGAATCATAG
Protein sequenceShow/hide protein sequence
MVREKIRGVSTRTLKWKCVESRADSKRLDYGGFILSPLIKEGASEYYGHCDAKSFAWRNRGVLALAGWMRNCSRHHLTTFFLWKSIERNRAYTNAKEFARRKLSYRRYRR
YIHACSKYES