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CmoCh17G005170 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh17G005170
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
Description30S ribosomal protein S11, chloroplastic
Genome locationCmo_Chr17:4993052..4995130
RNA-Seq ExpressionCmoCh17G005170
SyntenyCmoCh17G005170
Gene Ontology termsGO:0006412 - translation (biological process)
GO:0005737 - cytoplasm (cellular component)
GO:0005840 - ribosome (cellular component)
GO:0003676 - nucleic acid binding (molecular function)
GO:0003735 - structural constituent of ribosome (molecular function)
InterPro domainsIPR001971 - Ribosomal protein S11
IPR036967 - Ribosomal protein S11 superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0063015.1 50S ribosomal protein L14 [Cucumis melo var. makuwa]1.0e-1860Show/hide
Query:  SEEPILGYVSGRIRHSLIHIQGHIESKLECTGAGNSLVLRWYLWIQRAKTRRGTPIATQTTAGNASRAGADQGMQRAKVMIKGPGLGRDAALRAIRR---
        +E+PILGYVSGRI+HS IHI G       C   G               TRRGTP A QT AGNA RA  DQGMQRA+VMIKGPGLGRDAALRAIRR   
Subjt:  SEEPILGYVSGRIRHSLIHIQGHIESKLECTGAGNSLVLRWYLWIQRAKTRRGTPIATQTTAGNASRAGADQGMQRAKVMIKGPGLGRDAALRAIRR---

Query:  KAVYY
        K +YY
Subjt:  KAVYY

KAD4584456.1 hypothetical protein E3N88_22057 [Mikania micrantha]2.0e-1447.29Show/hide
Query:  KEEEVIRAVIVRTELK----RETIMSEEPILGYVSGRIRHSLIHIQGHIESKLECTGAGNSLVLRWYL--WIQRAK-----TRRGTPIATQTTAGNASRA
        KE++ I   ++   L     R  + +E  ILGYVSG+IR S I I      K+E +   ++  +R  +  W          TRRGTP A QT A NA RA
Subjt:  KEEEVIRAVIVRTELK----RETIMSEEPILGYVSGRIRHSLIHIQGHIESKLECTGAGNSLVLRWYL--WIQRAK-----TRRGTPIATQTTAGNASRA

Query:  GADQGMQRAKVMIKGPGLGRDAALRAIRR
          DQGMQRA+VMIKGPGLGRDA LRAIRR
Subjt:  GADQGMQRAKVMIKGPGLGRDAALRAIRR

KAD4981935.1 hypothetical protein E3N88_18606 [Mikania micrantha]1.5e-1448.06Show/hide
Query:  KEEEVIRAVIVRTELK----RETIMSEEPILGYVSGRIRHSLIHIQGHIESKLECTGAGNSLVLRWYL--WIQRAK-----TRRGTPIATQTTAGNASRA
        KE++ I   ++   L     R  + +E  ILGYVSG+IR S I I      K+E +   ++  +R  +  W          TRRGTP ATQT A NA RA
Subjt:  KEEEVIRAVIVRTELK----RETIMSEEPILGYVSGRIRHSLIHIQGHIESKLECTGAGNSLVLRWYL--WIQRAK-----TRRGTPIATQTTAGNASRA

Query:  GADQGMQRAKVMIKGPGLGRDAALRAIRR
          DQGMQRA+VMIKGPGL RDAALRAIRR
Subjt:  GADQGMQRAKVMIKGPGLGRDAALRAIRR

PHT28657.1 50S ribosomal protein L14, chloroplastic [Capsicum baccatum]1.3e-1360.26Show/hide
Query:  ESKL--ECTGAGNSLVLRWYLWIQRAKTRRGTPIATQTTAGNASRAGADQGMQRAKVMIKGPGLGRDAALRAIRRKAV
        E KL   CTG  + LVLRWY WI+   TRRGTP A QT A NA R   DQGMQR +VMIKGP L RD ALRAI +  +
Subjt:  ESKL--ECTGAGNSLVLRWYLWIQRAKTRRGTPIATQTTAGNASRAGADQGMQRAKVMIKGPGLGRDAALRAIRRKAV

YP_009503885.1 ribosomal protein S11 [Xylocarpus rumphii]7.6e-1454.95Show/hide
Query:  RIRHSLIHIQGHIESKLECTGAGNSLVLRWYL--WIQRAKTRRGTPIATQTTAGNASRAGADQGMQRAKVMIKGPGLGRDAALRAIRRKAV
        RI   +IH+Q    + +         V+ WY         TRRGTP A QT AGNA RA ADQGMQRA+VMIKGPGLGRDAALRAIRR  +
Subjt:  RIRHSLIHIQGHIESKLECTGAGNSLVLRWYL--WIQRAKTRRGTPIATQTTAGNASRAGADQGMQRAKVMIKGPGLGRDAALRAIRRKAV

TrEMBL top hitse value%identityAlignment
A0A2Z4WSP4 30S ribosomal protein S11, chloroplastic3.7e-1454.95Show/hide
Query:  RIRHSLIHIQGHIESKLECTGAGNSLVLRWYL--WIQRAKTRRGTPIATQTTAGNASRAGADQGMQRAKVMIKGPGLGRDAALRAIRRKAV
        RI   +IH+Q    + +         V+ WY         TRRGTP A QT AGNA RA ADQGMQRA+VMIKGPGLGRDAALRAIRR  +
Subjt:  RIRHSLIHIQGHIESKLECTGAGNSLVLRWYL--WIQRAKTRRGTPIATQTTAGNASRAGADQGMQRAKVMIKGPGLGRDAALRAIRRKAV

A0A2Z4WSX7 30S ribosomal protein S11, chloroplastic3.7e-1454.95Show/hide
Query:  RIRHSLIHIQGHIESKLECTGAGNSLVLRWYL--WIQRAKTRRGTPIATQTTAGNASRAGADQGMQRAKVMIKGPGLGRDAALRAIRRKAV
        RI   +IH+Q    + +         V+ WY         TRRGTP A QT AGNA RA ADQGMQRA+VMIKGPGLGRDAALRAIRR  +
Subjt:  RIRHSLIHIQGHIESKLECTGAGNSLVLRWYL--WIQRAKTRRGTPIATQTTAGNASRAGADQGMQRAKVMIKGPGLGRDAALRAIRRKAV

A0A5A7VAT2 50S ribosomal protein L144.9e-1960Show/hide
Query:  SEEPILGYVSGRIRHSLIHIQGHIESKLECTGAGNSLVLRWYLWIQRAKTRRGTPIATQTTAGNASRAGADQGMQRAKVMIKGPGLGRDAALRAIRR---
        +E+PILGYVSGRI+HS IHI G       C   G               TRRGTP A QT AGNA RA  DQGMQRA+VMIKGPGLGRDAALRAIRR   
Subjt:  SEEPILGYVSGRIRHSLIHIQGHIESKLECTGAGNSLVLRWYLWIQRAKTRRGTPIATQTTAGNASRAGADQGMQRAKVMIKGPGLGRDAALRAIRR---

Query:  KAVYY
        K +YY
Subjt:  KAVYY

A0A5N6N9A8 S1-like domain-containing protein9.6e-1547.29Show/hide
Query:  KEEEVIRAVIVRTELK----RETIMSEEPILGYVSGRIRHSLIHIQGHIESKLECTGAGNSLVLRWYL--WIQRAK-----TRRGTPIATQTTAGNASRA
        KE++ I   ++   L     R  + +E  ILGYVSG+IR S I I      K+E +   ++  +R  +  W          TRRGTP A QT A NA RA
Subjt:  KEEEVIRAVIVRTELK----RETIMSEEPILGYVSGRIRHSLIHIQGHIESKLECTGAGNSLVLRWYL--WIQRAK-----TRRGTPIATQTTAGNASRA

Query:  GADQGMQRAKVMIKGPGLGRDAALRAIRR
          DQGMQRA+VMIKGPGLGRDA LRAIRR
Subjt:  GADQGMQRAKVMIKGPGLGRDAALRAIRR

A0A5N6NML1 S1-like domain-containing protein7.4e-1548.06Show/hide
Query:  KEEEVIRAVIVRTELK----RETIMSEEPILGYVSGRIRHSLIHIQGHIESKLECTGAGNSLVLRWYL--WIQRAK-----TRRGTPIATQTTAGNASRA
        KE++ I   ++   L     R  + +E  ILGYVSG+IR S I I      K+E +   ++  +R  +  W          TRRGTP ATQT A NA RA
Subjt:  KEEEVIRAVIVRTELK----RETIMSEEPILGYVSGRIRHSLIHIQGHIESKLECTGAGNSLVLRWYL--WIQRAK-----TRRGTPIATQTTAGNASRA

Query:  GADQGMQRAKVMIKGPGLGRDAALRAIRR
          DQGMQRA+VMIKGPGL RDAALRAIRR
Subjt:  GADQGMQRAKVMIKGPGLGRDAALRAIRR

SwissProt top hitse value%identityAlignment
A0ZZ68 30S ribosomal protein S11, chloroplastic3.2e-1552.75Show/hide
Query:  RIRHSLIHIQGHIESKLECTGAGNSLVLRWYL--WIQRAKTRRGTPIATQTTAGNASRAGADQGMQRAKVMIKGPGLGRDAALRAIRRKAV
        RI   +IH+Q    + +         V+ W          TRRGTP A QT AGNA RA  DQGMQRA+VMIKGPGLGRDAALRAIRR  +
Subjt:  RIRHSLIHIQGHIESKLECTGAGNSLVLRWYL--WIQRAKTRRGTPIATQTTAGNASRAGADQGMQRAKVMIKGPGLGRDAALRAIRRKAV

B1A968 30S ribosomal protein S11, chloroplastic3.2e-1552.75Show/hide
Query:  RIRHSLIHIQGHIESKLECTGAGNSLVLRWYL--WIQRAKTRRGTPIATQTTAGNASRAGADQGMQRAKVMIKGPGLGRDAALRAIRRKAV
        RI   +IH+Q    + +         V+ W          TRRGTP A QT AGNA RA  DQGMQRA+VMIKGPGLGRDAALRAIRR  +
Subjt:  RIRHSLIHIQGHIESKLECTGAGNSLVLRWYL--WIQRAKTRRGTPIATQTTAGNASRAGADQGMQRAKVMIKGPGLGRDAALRAIRRKAV

Q09ME4 30S ribosomal protein S11, chloroplastic1.1e-1553.85Show/hide
Query:  RIRHSLIHIQGHIESKLECTGAGNSLVLRWYL--WIQRAKTRRGTPIATQTTAGNASRAGADQGMQRAKVMIKGPGLGRDAALRAIRRKAV
        RI   +IH+Q    + +         V+ W          TRRGTP A QT AGNA RA ADQGMQRA+VMIKGPGLGRDAALRAIRR  +
Subjt:  RIRHSLIHIQGHIESKLECTGAGNSLVLRWYL--WIQRAKTRRGTPIATQTTAGNASRAGADQGMQRAKVMIKGPGLGRDAALRAIRRKAV

Q2L937 30S ribosomal protein S11, chloroplastic3.2e-1552.75Show/hide
Query:  RIRHSLIHIQGHIESKLECTGAGNSLVLRWYL--WIQRAKTRRGTPIATQTTAGNASRAGADQGMQRAKVMIKGPGLGRDAALRAIRRKAV
        RI   +IH+Q    + +         V+ W          TRRGTP A QT AGNA RA  DQGMQRA+VMIKGPGLGRDAALRAIRR  +
Subjt:  RIRHSLIHIQGHIESKLECTGAGNSLVLRWYL--WIQRAKTRRGTPIATQTTAGNASRAGADQGMQRAKVMIKGPGLGRDAALRAIRRKAV

Q9BBQ3 30S ribosomal protein S11, chloroplastic5.4e-1551.65Show/hide
Query:  RIRHSLIHIQGHIESKLECTGAGNSLVLRWYL--WIQRAKTRRGTPIATQTTAGNASRAGADQGMQRAKVMIKGPGLGRDAALRAIRRKAV
        +I   +IH+Q    + +         V+ W          TRRGTP A QT AGNA R  ADQGMQRA+VMIKGPGLGRDAALRAIRR  +
Subjt:  RIRHSLIHIQGHIESKLECTGAGNSLVLRWYL--WIQRAKTRRGTPIATQTTAGNASRAGADQGMQRAKVMIKGPGLGRDAALRAIRRKAV

Arabidopsis top hitse value%identityAlignment
ATCG00750.1 ribosomal protein S111.1e-1551.65Show/hide
Query:  RIRHSLIHIQGHIESKLECTGAGNSLVLRWYL--WIQRAKTRRGTPIATQTTAGNASRAGADQGMQRAKVMIKGPGLGRDAALRAIRRKAV
        RI   +IH+Q    + +         V+ W          TRRGTP A QT AGNA RA  DQGMQRA+V IKGPGLGRDAALRAIRR  +
Subjt:  RIRHSLIHIQGHIESKLECTGAGNSLVLRWYL--WIQRAKTRRGTPIATQTTAGNASRAGADQGMQRAKVMIKGPGLGRDAALRAIRRKAV


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCCCGGCCCGGCCCAAACCTAACGAAAGAGGAAGAAGTGATCAGAGCTGTAATTGTACGTACTGAACTCAAACGAGAAACAATAATGAGTGAGGAACCCATTCTAGG
TTACGTTTCAGGAAGGATTCGACATAGTTTGATACATATACAAGGTCATATAGAGTCAAAGTTGGAATGTACGGGGGCGGGGAATTCCTTGGTCCTACGCTGGTACTTGT
GGATTCAAAGGGCCAAGACAAGAAGAGGGACGCCAATTGCTACTCAAACCACAGCTGGAAATGCTAGTCGGGCAGGAGCAGATCAAGGTATGCAACGAGCAAAAGTCATG
ATAAAAGGCCCTGGTCTCGGAAGAGATGCAGCGTTAAGAGCTATTCGTAGAAAAGCGGTATACTATTGA
mRNA sequenceShow/hide mRNA sequence
ATGGCCCGGCCCGGCCCAAACCTAACGAAAGAGGAAGAAGTGATCAGAGCTGTAATTGTACGTACTGAACTCAAACGAGAAACAATAATGAGTGAGGAACCCATTCTAGG
TTACGTTTCAGGAAGGATTCGACATAGTTTGATACATATACAAGGTCATATAGAGTCAAAGTTGGAATGTACGGGGGCGGGGAATTCCTTGGTCCTACGCTGGTACTTGT
GGATTCAAAGGGCCAAGACAAGAAGAGGGACGCCAATTGCTACTCAAACCACAGCTGGAAATGCTAGTCGGGCAGGAGCAGATCAAGGTATGCAACGAGCAAAAGTCATG
ATAAAAGGCCCTGGTCTCGGAAGAGATGCAGCGTTAAGAGCTATTCGTAGAAAAGCGGTATACTATTGA
Protein sequenceShow/hide protein sequence
MARPGPNLTKEEEVIRAVIVRTELKRETIMSEEPILGYVSGRIRHSLIHIQGHIESKLECTGAGNSLVLRWYLWIQRAKTRRGTPIATQTTAGNASRAGADQGMQRAKVM
IKGPGLGRDAALRAIRRKAVYY