CuGenDBv2

Gene ID	CmoCh17G005260
Organism	Cucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
Description	RNA-binding protein 38-like
Genome location	Cmo_Chr17:5160168..5161042
RNA-Seq Expression	CmoCh17G005260
Synteny	CmoCh17G005260
Gene Ontology terms	GO:0030154 - cell differentiation (biological process) GO:0003729 - mRNA binding (molecular function)
InterPro domains	IPR037366 - BOULE/DAZ family

Homology

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GenBank top hits

e value

%identity

Alignment

KAG6575302.1 putative RNA-binding protein ARP1, partial [Cucurbita argyrosperma subsp. sororia]

1.1e-74

91.14

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Query:  GVVGRFRDSSGIVTPHAYHIPSSSYIHQPTTQYSYPLSGYGFAGYSQDIIHPLVGIYVYMGQQFSPYYSANGISDQARMFQNLYPYYAQSSQGYAFGIQY
        GV GRFR SSGIVTPHAYHIPSSSYIHQPTTQYSYPLSGYGFAGYSQDIIHPL     Y GQQFSPYYSANGIS+QARMFQNLYPYYAQSSQGYAFGIQY
Subjt:  GVVGRFRDSSGIVTPHAYHIPSSSYIHQPTTQYSYPLSGYGFAGYSQDIIHPLVGIYVYMGQQFSPYYSANGISDQARMFQNLYPYYAQSSQGYAFGIQY

Query:  PHLIQYPYLHQQHGLIDILSLPGSNATRAGTTATPTWAVGSGPSQASFAIASEPKSSS
        PH++QYPYLHQQHGL DIL LPGSNATR GTTATPTWAVGSGPSQASFAIASEPKSSS
Subjt:  PHLIQYPYLHQQHGLIDILSLPGSNATRAGTTATPTWAVGSGPSQASFAIASEPKSSS

KAG7013834.1 putative RNA-binding protein ARP1, partial [Cucurbita argyrosperma subsp. argyrosperma]

2.9e-59

89.84

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Query:  GVVGRFRDSSGIVTPHAYHIPSSSYIHQPTTQYSYPLSGYGFAGYSQDIIHPLVGIYVYMGQQFSPYYSANGISDQARMFQNLYPYYAQSSQGYAFGIQY
        GV GRFR SSGIVTPHAYHIPSSSYIHQPTTQYSYPLSGYGFAGYSQDIIHPL     Y GQQFSPYYSANGIS+QARMFQNLYPYYAQSSQGYAFGIQY
Subjt:  GVVGRFRDSSGIVTPHAYHIPSSSYIHQPTTQYSYPLSGYGFAGYSQDIIHPLVGIYVYMGQQFSPYYSANGISDQARMFQNLYPYYAQSSQGYAFGIQY

Query:  PHLIQYPYLHQQHGLIDILSLPGSNATR
        PH++QYPYLHQQHGL DIL LPGSNATR
Subjt:  PHLIQYPYLHQQHGLIDILSLPGSNATR

XP_008460001.1 PREDICTED: RNA-binding protein 24-B [Cucumis melo]

8.4e-59

78.12

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Query:  GVVGRFRDSSGIVTPHAYHIPSSSYIHQPTTQYSYPLSGYGFAGYSQDIIHPLVGIYVYMGQQFSPYYSANGISDQARMFQNLYPYYAQSSQGYAFGIQY
        GV GRFR +SGIVTP AYH+ SSSYIHQPT+QYS+PLSGYGFAGYSQD I+PL    VY GQQFSPYYSANG+S  A MFQNLYPYYAQSSQGY FGIQY
Subjt:  GVVGRFRDSSGIVTPHAYHIPSSSYIHQPTTQYSYPLSGYGFAGYSQDIIHPLVGIYVYMGQQFSPYYSANGISDQARMFQNLYPYYAQSSQGYAFGIQY

Query:  PHLIQYPYLHQQHGLIDILSLPGSNA---TRAGTTATPTWAVGSGPSQASFAIASEPKSS
        PHL+QYPYL QQHG   ILSLPGSNA   T +GTTAT T AVGSGPSQAS A+ASEP SS
Subjt:  PHLIQYPYLHQQHGLIDILSLPGSNA---TRAGTTATPTWAVGSGPSQASFAIASEPKSS

XP_022929861.1 RNA-binding protein 38-like [Cucurbita moschata]

7.3e-79

96.2

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Query:  GVVGRFRDSSGIVTPHAYHIPSSSYIHQPTTQYSYPLSGYGFAGYSQDIIHPLVGIYVYMGQQFSPYYSANGISDQARMFQNLYPYYAQSSQGYAFGIQY
        GVVGRFRDSSGIVTPHAYHIPSSSYIHQPTTQYSYPLSGYGFAGYSQDIIHPL     Y GQQFSPYYSANGISDQARMFQNLYPYYAQSSQGYAFGIQY
Subjt:  GVVGRFRDSSGIVTPHAYHIPSSSYIHQPTTQYSYPLSGYGFAGYSQDIIHPLVGIYVYMGQQFSPYYSANGISDQARMFQNLYPYYAQSSQGYAFGIQY

Query:  PHLIQYPYLHQQHGLIDILSLPGSNATRAGTTATPTWAVGSGPSQASFAIASEPKSSS
        PHLIQYPYLHQQHGLIDILSLPGSNATRAGTTATPTWAVGSGPSQASFAIASEPKSSS
Subjt:  PHLIQYPYLHQQHGLIDILSLPGSNATRAGTTATPTWAVGSGPSQASFAIASEPKSSS

XP_022992358.1 RNA-binding protein 38-like [Cucurbita maxima]

4.4e-68

86.79

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Query:  GVVGRFRDSSGIVTPHAYHIPSSSYIHQPTTQYSYPLSGYGFAGYSQDIIHPLVGIYVYMGQQFSPYYSANGISDQARMFQNLYPYYAQSSQGYAFGIQY
        GV GRFR SSGIVTPHAYHIPSSSYIHQPTTQYSYPLSGYGFAGYSQDIIHPL     Y GQQFSPYYS  GIS+QARMF+NLYPYYAQSSQGYAFGIQY
Subjt:  GVVGRFRDSSGIVTPHAYHIPSSSYIHQPTTQYSYPLSGYGFAGYSQDIIHPLVGIYVYMGQQFSPYYSANGISDQARMFQNLYPYYAQSSQGYAFGIQY

Query:  PHLIQYPYLH-QQHGLIDILSLPGSNATRAGTTATPTWAVGSGPSQASFAIASEPKSSS
        PHL+ YP LH QQHGL DILSLPG NATR GTTATPTWAV SGPSQAS AIASEPKSSS
Subjt:  PHLIQYPYLH-QQHGLIDILSLPGSNATRAGTTATPTWAVGSGPSQASFAIASEPKSSS

TrEMBL top hits

e value

%identity

Alignment

A0A0A0K998 RRM domain-containing protein

3.8e-57

76.25

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Query:  GVVGRFRDSSGIVTPHAYHIPSSSYIHQPTTQYSYPLSGYGFAGYSQDIIHPLVGIYVYMGQQFSPYYSANGISDQARMFQNLYPYYAQSSQGYAFGIQY
        GV GRFR +SGIVTP AYH+ SSSYIHQPT+QYS+PLSGYGFAGYSQD I+PL    VY GQQFSPYYSANG+S  A MFQNLYPYYAQSSQGY FG+QY
Subjt:  GVVGRFRDSSGIVTPHAYHIPSSSYIHQPTTQYSYPLSGYGFAGYSQDIIHPLVGIYVYMGQQFSPYYSANGISDQARMFQNLYPYYAQSSQGYAFGIQY

Query:  PHLIQYPYLHQQHGLIDILSLPGSNA---TRAGTTATPTWAVGSGPSQASFAIASEPKSS
        PHL+QYPYL QQH    ILSLPGSNA   T +GTTAT   AVGSGPSQAS A+ASEP SS
Subjt:  PHLIQYPYLHQQHGLIDILSLPGSNA---TRAGTTATPTWAVGSGPSQASFAIASEPKSS

A0A1S3CBZ0 RNA-binding protein 24-B

4.1e-59

78.12

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Query:  GVVGRFRDSSGIVTPHAYHIPSSSYIHQPTTQYSYPLSGYGFAGYSQDIIHPLVGIYVYMGQQFSPYYSANGISDQARMFQNLYPYYAQSSQGYAFGIQY
        GV GRFR +SGIVTP AYH+ SSSYIHQPT+QYS+PLSGYGFAGYSQD I+PL    VY GQQFSPYYSANG+S  A MFQNLYPYYAQSSQGY FGIQY
Subjt:  GVVGRFRDSSGIVTPHAYHIPSSSYIHQPTTQYSYPLSGYGFAGYSQDIIHPLVGIYVYMGQQFSPYYSANGISDQARMFQNLYPYYAQSSQGYAFGIQY

Query:  PHLIQYPYLHQQHGLIDILSLPGSNA---TRAGTTATPTWAVGSGPSQASFAIASEPKSS
        PHL+QYPYL QQHG   ILSLPGSNA   T +GTTAT T AVGSGPSQAS A+ASEP SS
Subjt:  PHLIQYPYLHQQHGLIDILSLPGSNA---TRAGTTATPTWAVGSGPSQASFAIASEPKSS

A0A5A7TA32 RNA-binding protein 24-B

4.1e-59

78.12

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Query:  GVVGRFRDSSGIVTPHAYHIPSSSYIHQPTTQYSYPLSGYGFAGYSQDIIHPLVGIYVYMGQQFSPYYSANGISDQARMFQNLYPYYAQSSQGYAFGIQY
        GV GRFR +SGIVTP AYH+ SSSYIHQPT+QYS+PLSGYGFAGYSQD I+PL    VY GQQFSPYYSANG+S  A MFQNLYPYYAQSSQGY FGIQY
Subjt:  GVVGRFRDSSGIVTPHAYHIPSSSYIHQPTTQYSYPLSGYGFAGYSQDIIHPLVGIYVYMGQQFSPYYSANGISDQARMFQNLYPYYAQSSQGYAFGIQY

Query:  PHLIQYPYLHQQHGLIDILSLPGSNA---TRAGTTATPTWAVGSGPSQASFAIASEPKSS
        PHL+QYPYL QQHG   ILSLPGSNA   T +GTTAT T AVGSGPSQAS A+ASEP SS
Subjt:  PHLIQYPYLHQQHGLIDILSLPGSNA---TRAGTTATPTWAVGSGPSQASFAIASEPKSS

A0A6J1EPB6 RNA-binding protein 38-like

3.5e-79

96.2

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Query:  GVVGRFRDSSGIVTPHAYHIPSSSYIHQPTTQYSYPLSGYGFAGYSQDIIHPLVGIYVYMGQQFSPYYSANGISDQARMFQNLYPYYAQSSQGYAFGIQY
        GVVGRFRDSSGIVTPHAYHIPSSSYIHQPTTQYSYPLSGYGFAGYSQDIIHPL     Y GQQFSPYYSANGISDQARMFQNLYPYYAQSSQGYAFGIQY
Subjt:  GVVGRFRDSSGIVTPHAYHIPSSSYIHQPTTQYSYPLSGYGFAGYSQDIIHPLVGIYVYMGQQFSPYYSANGISDQARMFQNLYPYYAQSSQGYAFGIQY

Query:  PHLIQYPYLHQQHGLIDILSLPGSNATRAGTTATPTWAVGSGPSQASFAIASEPKSSS
        PHLIQYPYLHQQHGLIDILSLPGSNATRAGTTATPTWAVGSGPSQASFAIASEPKSSS
Subjt:  PHLIQYPYLHQQHGLIDILSLPGSNATRAGTTATPTWAVGSGPSQASFAIASEPKSSS

A0A6J1JYZ4 RNA-binding protein 38-like

2.2e-68

86.79

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Query:  GVVGRFRDSSGIVTPHAYHIPSSSYIHQPTTQYSYPLSGYGFAGYSQDIIHPLVGIYVYMGQQFSPYYSANGISDQARMFQNLYPYYAQSSQGYAFGIQY
        GV GRFR SSGIVTPHAYHIPSSSYIHQPTTQYSYPLSGYGFAGYSQDIIHPL     Y GQQFSPYYS  GIS+QARMF+NLYPYYAQSSQGYAFGIQY
Subjt:  GVVGRFRDSSGIVTPHAYHIPSSSYIHQPTTQYSYPLSGYGFAGYSQDIIHPLVGIYVYMGQQFSPYYSANGISDQARMFQNLYPYYAQSSQGYAFGIQY

Query:  PHLIQYPYLH-QQHGLIDILSLPGSNATRAGTTATPTWAVGSGPSQASFAIASEPKSSS
        PHL+ YP LH QQHGL DILSLPG NATR GTTATPTWAV SGPSQAS AIASEPKSSS
Subjt:  PHLIQYPYLH-QQHGLIDILSLPGSNATRAGTTATPTWAVGSGPSQASFAIASEPKSSS

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT2G46780.1 RNA-binding (RRM/RBD/RNP motifs) family protein

1.1e-11

33.33

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Query:  GRFRDSS---GIVTPHAYHIPSSS---YIHQP----TTQYSYPLSGYGFAGYSQDIIHPL--VGIYVYMGQQFSPYYSANGISDQARMFQNLYPYY----
        GRFR      G+V P      SSS   ++HQ     T Q+ +P S YGF+GYSQ+ ++P+     ++Y GQQFSP Y  +  +    MF   YPYY    
Subjt:  GRFRDSS---GIVTPHAYHIPSSS---YIHQP----TTQYSYPLSGYGFAGYSQDIIHPL--VGIYVYMGQQFSPYYSANGISDQARMFQNLYPYY----

Query:  -------------AQSSQGYAFGIQY-----PHLIQYPYL-HQQHGLID-----------ILSLP--------------GSNATRAGTTATPTWAVGSGP
                     AQ  QG++F  QY     P L+QYPYL HQ H               ILSLP               S +T A TTAT T  + +  
Subjt:  -------------AQSSQGYAFGIQY-----PHLIQYPYL-HQQHGLID-----------ILSLP--------------GSNATRAGTTATPTWAVGSGP

Query:  SQASFAIASE
         +A    +S+
Subjt:  SQASFAIASE

Sequences

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CDS sequence

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ATGGATCATAAAAATTCCCACATGCAATCTGAATCTCCATTTCTTTTGCTGAGAATCATGTCAAATCCAAAAATGTTGAACAAATTTGCAGGTGTTGTTGGAAGATTTAG
AGATTCATCTGGGATTGTGACCCCCCATGCTTATCATATCCCTTCATCATCTTATATCCATCAGCCCACTACTCAATACTCATACCCTCTTTCAGGATATGGGTTTGCTG
GATATTCACAAGACATAATCCATCCATTGGTAGGAATCTATGTTTATATGGGCCAACAATTTTCACCTTATTACTCTGCAAATGGGATTTCAGATCAGGCTAGAATGTTT
CAAAATCTCTATCCATATTATGCTCAAAGTAGCCAGGGGTACGCGTTTGGAATTCAGTATCCACACCTAATACAGTACCCGTATCTTCATCAGCAGCACGGTTTGATCGA
TATCCTATCGCTTCCTGGCTCGAACGCAACAAGAGCAGGTACAACAGCAACACCGACATGGGCAGTCGGATCTGGACCTTCACAAGCTTCTTTTGCAATAGCTTCTGAAC
CGAAGTCTTCGAGTTAA

mRNA sequence

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Protein sequence

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MDHKNSHMQSESPFLLLRIMSNPKMLNKFAGVVGRFRDSSGIVTPHAYHIPSSSYIHQPTTQYSYPLSGYGFAGYSQDIIHPLVGIYVYMGQQFSPYYSANGISDQARMF
QNLYPYYAQSSQGYAFGIQYPHLIQYPYLHQQHGLIDILSLPGSNATRAGTTATPTWAVGSGPSQASFAIASEPKSSS

CmoCh17G005260 (gene) of Cucurbita moschata (Rifu) v1 genome