; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

CmoCh17G005460 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh17G005460
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
DescriptionNAD(P)H-quinone oxidoreductase subunit 5, chloroplastic
Genome locationCmo_Chr17:5541292..5542604
RNA-Seq ExpressionCmoCh17G005460
SyntenyCmoCh17G005460
Gene Ontology termsGO:0009507 - chloroplast (cellular component)
GO:0009579 - thylakoid (cellular component)
GO:0016020 - membrane (cellular component)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
AAZ22552.1 NADH dehydrogenase subunit F, partial [Syzygium acuminatissimum]2.0e-0569.77Show/hide
Query:  KQGSGSIIHSMESIVGYSPDKSQNMVLTGFNKAYANYKKCFFI
        K+GSGSIIHSME+IVGYSPDKSQNMVL G  K Y    K  F+
Subjt:  KQGSGSIIHSMESIVGYSPDKSQNMVLTGFNKAYANYKKCFFI

AFW05315.1 NADH dehydrogenase subunit F, partial [Phaeanthus splendens]3.5e-0573.17Show/hide
Query:  GSGSIIHSMESIVGYSPDKSQNMVLTGFNKAYANYKKCFFI
        GSGSIIHSMESIVGYSPDKSQNMVL G  K Y    K  F+
Subjt:  GSGSIIHSMESIVGYSPDKSQNMVLTGFNKAYANYKKCFFI

AGC09029.1 NADH dehydrogenase subunit F, partial [Cambessedesia espora]3.5e-0570.73Show/hide
Query:  GSGSIIHSMESIVGYSPDKSQNMVLTGFNKAYANYKKCFFI
        GSGSIIHSME+IVGYSPDKSQNMVL G  K +    K FF+
Subjt:  GSGSIIHSMESIVGYSPDKSQNMVLTGFNKAYANYKKCFFI

QWL16745.1 NADH-plastoquinone oxidoreductase subunit 5 [Plantago afra]3.5e-0570.73Show/hide
Query:  GSGSIIHSMESIVGYSPDKSQNMVLTGFNKAYANYKKCFFI
        GSGS+IHSME+IVGYSPDKSQNMVL G  K YA   K  F+
Subjt:  GSGSIIHSMESIVGYSPDKSQNMVLTGFNKAYANYKKCFFI

YP_009679138.1 NADH-plastoquinone oxidoreductase subunit 5 [Teucrium mascatense]3.5e-0566.67Show/hide
Query:  GSGSIIHSMESIVGYSPDKSQNMVLT-GFNKAYANYKKCFFIRYPLFL
        GSGS+IHSME+IVGYSPDKSQNMVL  G  K     K  FFIRY   L
Subjt:  GSGSIIHSMESIVGYSPDKSQNMVLT-GFNKAYANYKKCFFIRYPLFL

TrEMBL top hitse value%identityAlignment
A0A4Y6I4I3 NAD(P)H-quinone oxidoreductase subunit 5, chloroplastic1.7e-0566.67Show/hide
Query:  GSGSIIHSMESIVGYSPDKSQNMVLT-GFNKAYANYKKCFFIRYPLFL
        GSGS+IHSME+IVGYSPDKSQNMVL  G  K     K  FFIRY   L
Subjt:  GSGSIIHSMESIVGYSPDKSQNMVLT-GFNKAYANYKKCFFIRYPLFL

K7T4T9 NAD(P)H-quinone oxidoreductase subunit 5, chloroplastic (Fragment)1.7e-0573.17Show/hide
Query:  GSGSIIHSMESIVGYSPDKSQNMVLTGFNKAYANYKKCFFI
        GSGSIIHSMESIVGYSPDKSQNMVL G  K Y    K  F+
Subjt:  GSGSIIHSMESIVGYSPDKSQNMVLTGFNKAYANYKKCFFI

L7RS25 NAD(P)H-quinone oxidoreductase subunit 5, chloroplastic (Fragment)1.7e-0570.73Show/hide
Query:  GSGSIIHSMESIVGYSPDKSQNMVLTGFNKAYANYKKCFFI
        GSGSIIHSME+IVGYSPDKSQNMVL G  K +    K FF+
Subjt:  GSGSIIHSMESIVGYSPDKSQNMVLTGFNKAYANYKKCFFI

Q45Y60 NAD(P)H-quinone oxidoreductase subunit 5, chloroplastic (Fragment)9.9e-0669.77Show/hide
Query:  KQGSGSIIHSMESIVGYSPDKSQNMVLTGFNKAYANYKKCFFI
        K+GSGSIIHSME+IVGYSPDKSQNMVL G  K Y    K  F+
Subjt:  KQGSGSIIHSMESIVGYSPDKSQNMVLTGFNKAYANYKKCFFI

Q6JXA7 NAD(P)H-quinone oxidoreductase subunit 5, chloroplastic (Fragment)1.7e-0570.73Show/hide
Query:  GSGSIIHSMESIVGYSPDKSQNMVLTGFNKAYANYKKCFFI
        GSGSIIHSMESIVGYSPDKSQN+VL G  K +    K FF+
Subjt:  GSGSIIHSMESIVGYSPDKSQNMVLTGFNKAYANYKKCFFI

SwissProt top hitse value%identityAlignment
A6MM84 NAD(P)H-quinone oxidoreductase subunit 5, chloroplastic1.0e-0772.5Show/hide
Query:  GSGSIIHSMESIVGYSPDKSQNMVLTGFNKAYANYKKCFF
        GSGSIIHSMESIVGYSPDKSQNM+L G  K Y    K  F
Subjt:  GSGSIIHSMESIVGYSPDKSQNMVLTGFNKAYANYKKCFF

B0Z4S2 NAD(P)H-quinone oxidoreductase subunit 5, chloroplastic1.7e-0770.73Show/hide
Query:  GSGSIIHSMESIVGYSPDKSQNMVLTGFNKAYANYKKCFFI
        GSGSIIHSMESIVGYSPDKSQNMVL G  K +    K  F+
Subjt:  GSGSIIHSMESIVGYSPDKSQNMVLTGFNKAYANYKKCFFI

B0Z506 NAD(P)H-quinone oxidoreductase subunit 5, chloroplastic1.7e-0770.73Show/hide
Query:  GSGSIIHSMESIVGYSPDKSQNMVLTGFNKAYANYKKCFFI
        GSGSIIHSMESIVGYSPDKSQNMVL G  K +    K  F+
Subjt:  GSGSIIHSMESIVGYSPDKSQNMVLTGFNKAYANYKKCFFI

B0Z590 NAD(P)H-quinone oxidoreductase subunit 5, chloroplastic1.7e-0770.73Show/hide
Query:  GSGSIIHSMESIVGYSPDKSQNMVLTGFNKAYANYKKCFFI
        GSGSIIHSMESIVGYSPDKSQNMVL G  K +    K  F+
Subjt:  GSGSIIHSMESIVGYSPDKSQNMVLTGFNKAYANYKKCFFI

Q9MTI4 NAD(P)H-quinone oxidoreductase subunit 5, chloroplastic1.7e-0770.73Show/hide
Query:  GSGSIIHSMESIVGYSPDKSQNMVLTGFNKAYANYKKCFFI
        GSGSIIHSMESIVGYSPDKSQNMVL G  K +    K  F+
Subjt:  GSGSIIHSMESIVGYSPDKSQNMVLTGFNKAYANYKKCFFI

Arabidopsis top hitse value%identityAlignment
ATCG01010.1 NADH-Ubiquinone oxidoreductase (complex I), chain 5 protein1.4e-0788.89Show/hide
Query:  GSGSIIHSMESIVGYSPDKSQNMVLTG
        GSGSIIHSME+IVGYSPDKSQNM+L G
Subjt:  GSGSIIHSMESIVGYSPDKSQNMVLTG


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAAAATCCAACCATCAGAATGGGAGTCCATAAATTTCAAGTTCGGATTCAGACCAGTTCTTCACGAAACAAAACAAGGATCTGGGTCCATTATTCACTCAATGGAATC
GATTGTTGGATATTCTCCAGATAAAAGTCAGAATATGGTTCTTACGGGGTTTAACAAAGCATATGCCAATTACAAAAAATGCTTTTTTATTAGGTACCCTTTGTTCTTGA
TGAAACAAGTGATTCAGGTGCCAAAATTGCGCAGTGAAGGAAATATAATTGTAAAGCTACGATGA
mRNA sequenceShow/hide mRNA sequence
ATGAAAATCCAACCATCAGAATGGGAGTCCATAAATTTCAAGTTCGGATTCAGACCAGTTCTTCACGAAACAAAACAAGGATCTGGGTCCATTATTCACTCAATGGAATC
GATTGTTGGATATTCTCCAGATAAAAGTCAGAATATGGTTCTTACGGGGTTTAACAAAGCATATGCCAATTACAAAAAATGCTTTTTTATTAGGTACCCTTTGTTCTTGA
TGAAACAAGTGATTCAGGTGCCAAAATTGCGCAGTGAAGGAAATATAATTGTAAAGCTACGATGAAAACCAACAGAAAGGAGCAATGCTGAAACTATATATGATAACAAA
ATCAGAAGAGGATACTGGGTGAGTCTCCAATGA
Protein sequenceShow/hide protein sequence
MKIQPSEWESINFKFGFRPVLHETKQGSGSIIHSMESIVGYSPDKSQNMVLTGFNKAYANYKKCFFIRYPLFLMKQVIQVPKLRSEGNIIVKLR