; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

CmoCh17G005510 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh17G005510
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
DescriptionrRNA N-glycosidase
Genome locationCmo_Chr17:5594526..5594855
RNA-Seq ExpressionCmoCh17G005510
SyntenyCmoCh17G005510
Gene Ontology termsGO:0006952 - defense response (biological process)
GO:0017148 - negative regulation of translation (biological process)
GO:0035821 - modification of morphology or physiology of other organism (biological process)
GO:0030246 - carbohydrate binding (molecular function)
GO:0030598 - rRNA N-glycosylase activity (molecular function)
GO:0090729 - toxin activity (molecular function)
InterPro domainsIPR000772 - Ricin B, lectin domain
IPR035992 - Ricin B-like lectins


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6575323.1 hypothetical protein SDJN03_25962, partial [Cucurbita argyrosperma subsp. sororia]5.6e-5599.08Show/hide
Query:  MDNNAKVWLEKCVEKKAEQYWAVYSDGSIRVNSSRNFCVSAASDSPGGLITITKCNGSSKQRWVFMADATILNPKSGLVMEVEGSQVSRNKIILYPIKGR
        MDNNAKVWLEKCVEKKAEQYWAVYSDGSIRVNSSRNFCVSAASDSPGGLITIT CNGSSKQRWVFMADATILNPKSGLVMEVEGSQVSRNKIILYPIKGR
Subjt:  MDNNAKVWLEKCVEKKAEQYWAVYSDGSIRVNSSRNFCVSAASDSPGGLITITKCNGSSKQRWVFMADATILNPKSGLVMEVEGSQVSRNKIILYPIKGR

Query:  SSQQWTLFY
        SSQQWTLFY
Subjt:  SSQQWTLFY

KAG7013862.1 hypothetical protein SDJN02_24031, partial [Cucurbita argyrosperma subsp. argyrosperma]5.6e-5599.08Show/hide
Query:  MDNNAKVWLEKCVEKKAEQYWAVYSDGSIRVNSSRNFCVSAASDSPGGLITITKCNGSSKQRWVFMADATILNPKSGLVMEVEGSQVSRNKIILYPIKGR
        MDNNAKVWLEKCVEKKAEQYWAVYSDGSIRVNSSRNFCVSAASDSPGGLITIT CNGSSKQRWVFMADATILNPKSGLVMEVEGSQVSRNKIILYPIKGR
Subjt:  MDNNAKVWLEKCVEKKAEQYWAVYSDGSIRVNSSRNFCVSAASDSPGGLITITKCNGSSKQRWVFMADATILNPKSGLVMEVEGSQVSRNKIILYPIKGR

Query:  SSQQWTLFY
        SSQQWTLFY
Subjt:  SSQQWTLFY

XP_011656527.1 seed lectin [Cucumis sativus]1.9e-3161.11Show/hide
Query:  DNNAKVWLEKCVEKKAEQYWAVYSDGSIRVNSSRNFCVSAASDSPGGLITITKCNGSSKQRWVFMADATILNPKSGLVMEVEGSQVSRNKIILYPIKGRS
        +NN  +WLEKCV+ KAEQYWAVYSDGSIRVN  RN CVS++S+  G L+ I +C G+S QRW F+A+ TILNP++  V++V GS VS  +IILYP  G +
Subjt:  DNNAKVWLEKCVEKKAEQYWAVYSDGSIRVNSSRNFCVSAASDSPGGLITITKCNGSSKQRWVFMADATILNPKSGLVMEVEGSQVSRNKIILYPIKGRS

Query:  SQQWTLFY
        +QQWTLFY
Subjt:  SQQWTLFY

XP_022991446.1 LOW QUALITY PROTEIN: seed lectin-like [Cucurbita maxima]1.1e-5396.33Show/hide
Query:  MDNNAKVWLEKCVEKKAEQYWAVYSDGSIRVNSSRNFCVSAASDSPGGLITITKCNGSSKQRWVFMADATILNPKSGLVMEVEGSQVSRNKIILYPIKGR
        MDNNAKVWLEKCVE+KAEQYWA+YSDGSIRVNSSRNFCVSAASDSPGGLITITKCNGSSKQRW FMADATILNPKSGLVMEVEGSQVSR+KIILYPIKGR
Subjt:  MDNNAKVWLEKCVEKKAEQYWAVYSDGSIRVNSSRNFCVSAASDSPGGLITITKCNGSSKQRWVFMADATILNPKSGLVMEVEGSQVSRNKIILYPIKGR

Query:  SSQQWTLFY
        SSQQWTLFY
Subjt:  SSQQWTLFY

XP_023547577.1 seed lectin-like [Cucurbita pepo subsp. pepo]6.2e-5497.25Show/hide
Query:  MDNNAKVWLEKCVEKKAEQYWAVYSDGSIRVNSSRNFCVSAASDSPGGLITITKCNGSSKQRWVFMADATILNPKSGLVMEVEGSQVSRNKIILYPIKGR
        MDNNAKVWLEKCVE+KAEQYWAVYSDGSIRVNSSRNFCVSAASDSPGGLITITKCNGSSKQRWVFMADATILNPKSGLVMEVE SQVSRNKIILYPIKGR
Subjt:  MDNNAKVWLEKCVEKKAEQYWAVYSDGSIRVNSSRNFCVSAASDSPGGLITITKCNGSSKQRWVFMADATILNPKSGLVMEVEGSQVSRNKIILYPIKGR

Query:  SSQQWTLFY
        SSQ+WTLFY
Subjt:  SSQQWTLFY

TrEMBL top hitse value%identityAlignment
A0A0A0K979 rRNA N-glycosidase9.3e-3261.11Show/hide
Query:  DNNAKVWLEKCVEKKAEQYWAVYSDGSIRVNSSRNFCVSAASDSPGGLITITKCNGSSKQRWVFMADATILNPKSGLVMEVEGSQVSRNKIILYPIKGRS
        +NN  +WLEKCV+ KAEQYWAVYSDGSIRVN  RN CVS++S+  G L+ I +C G+S QRW F+A+ TILNP++  V++V GS VS  +IILYP  G +
Subjt:  DNNAKVWLEKCVEKKAEQYWAVYSDGSIRVNSSRNFCVSAASDSPGGLITITKCNGSSKQRWVFMADATILNPKSGLVMEVEGSQVSRNKIILYPIKGRS

Query:  SQQWTLFY
        +QQWTLFY
Subjt:  SQQWTLFY

A0A1S3BDI7 rRNA N-glycosidase1.5e-2960.19Show/hide
Query:  DNNAKVWLEKCVEKKAEQYWAVYSDGSIRVNSSRNFCVSAASDSPGGLITITKCNGSSKQRWVFMADATILNPKSGLVMEVEGSQVSRNKIILYPIKGRS
        +NN  VWLEKCV+ KAEQYWAVY DGSIRVNS RN CVS++S+    LI I +CNG+S QRW F+A+  ILNP++ +VM+V    VSR KIILY   G  
Subjt:  DNNAKVWLEKCVEKKAEQYWAVYSDGSIRVNSSRNFCVSAASDSPGGLITITKCNGSSKQRWVFMADATILNPKSGLVMEVEGSQVSRNKIILYPIKGRS

Query:  SQQWTLFY
        +Q+W LFY
Subjt:  SQQWTLFY

A0A1S3C7Q1 rRNA N-glycosidase8.5e-2552.73Show/hide
Query:  DNNAKVWLEKCVEKKAEQYWAVYSDGSIRVNSSRNFCVSAASD--SPGGLITITKCNGSSKQRWVFMADATILNPKSGLVMEVEGSQVSRNKIILYPIKG
        +NN  + L+ C + K+EQYWA+Y DG+IRVNSSRN CVS  S   +PG +IT+  CNGSS QRW F AD +I+NPK G+ ++V+        IILYP  G
Subjt:  DNNAKVWLEKCVEKKAEQYWAVYSDGSIRVNSSRNFCVSAASD--SPGGLITITKCNGSSKQRWVFMADATILNPKSGLVMEVEGSQVSRNKIILYPIKG

Query:  RSSQQWTLFY
          +QQW+LFY
Subjt:  RSSQQWTLFY

A0A5D3D0Q4 rRNA N-glycosidase1.5e-2960.19Show/hide
Query:  DNNAKVWLEKCVEKKAEQYWAVYSDGSIRVNSSRNFCVSAASDSPGGLITITKCNGSSKQRWVFMADATILNPKSGLVMEVEGSQVSRNKIILYPIKGRS
        +NN  VWLEKCV+ KAEQYWAVY DGSIRVNS RN CVS++S+    LI I +CNG+S QRW F+A+  ILNP++ +VM+V    VSR KIILY   G  
Subjt:  DNNAKVWLEKCVEKKAEQYWAVYSDGSIRVNSSRNFCVSAASDSPGGLITITKCNGSSKQRWVFMADATILNPKSGLVMEVEGSQVSRNKIILYPIKGRS

Query:  SQQWTLFY
        +Q+W LFY
Subjt:  SQQWTLFY

A0A6J1JQR5 rRNA N-glycosidase5.1e-5496.33Show/hide
Query:  MDNNAKVWLEKCVEKKAEQYWAVYSDGSIRVNSSRNFCVSAASDSPGGLITITKCNGSSKQRWVFMADATILNPKSGLVMEVEGSQVSRNKIILYPIKGR
        MDNNAKVWLEKCVE+KAEQYWA+YSDGSIRVNSSRNFCVSAASDSPGGLITITKCNGSSKQRW FMADATILNPKSGLVMEVEGSQVSR+KIILYPIKGR
Subjt:  MDNNAKVWLEKCVEKKAEQYWAVYSDGSIRVNSSRNFCVSAASDSPGGLITITKCNGSSKQRWVFMADATILNPKSGLVMEVEGSQVSRNKIILYPIKGR

Query:  SSQQWTLFY
        SSQQWTLFY
Subjt:  SSQQWTLFY

SwissProt top hitse value%identityAlignment
O22415 Ribosome-inactivating protein SNAIf7.4e-2654.9Show/hide
Query:  NAKVWLEKCVEKKAEQYWAVYSDGSIRVNSSRNFCVSAASDSPGGLITITKCNGSSKQRWVFMADATILNPKSGLVMEVEGSQVSRNKIILYPIKGRSSQ
        N  VWLE CV  + EQ WA+Y DG+IRVNS+R+ CV++    P  LI I KC GS  QRWVF  + TI NP + LVM+V  S VS  KIILYP  G  +Q
Subjt:  NAKVWLEKCVEKKAEQYWAVYSDGSIRVNSSRNFCVSAASDSPGGLITITKCNGSSKQRWVFMADATILNPKSGLVMEVEGSQVSRNKIILYPIKGRSSQ

Query:  QW
        QW
Subjt:  QW

P33183 Nigrin b1.6e-2046.08Show/hide
Query:  NAKVWLEKCVEKKAEQYWAVYSDGSIRVNSSRNFCVSAASDSPGGLITITKCNGSSKQRWVFMADATILNPKSGLVMEVEGSQVSRNKIILYPIKGRSSQ
        N  VW+E C     +Q WA+Y D +IRVNS+R  CV+    +   LI I KC G   QRW F +D  I+NPKS  VM+V  S VS  +II++P  G  +Q
Subjt:  NAKVWLEKCVEKKAEQYWAVYSDGSIRVNSSRNFCVSAASDSPGGLITITKCNGSSKQRWVFMADATILNPKSGLVMEVEGSQVSRNKIILYPIKGRSSQ

Query:  QW
        QW
Subjt:  QW

Q41358 Ribosome-inactivating protein SNAI1.5e-2350.98Show/hide
Query:  NAKVWLEKCVEKKAEQYWAVYSDGSIRVNSSRNFCVSAASDSPGGLITITKCNGSSKQRWVFMADATILNPKSGLVMEVEGSQVSRNKIILYPIKGRSSQ
        N  VWLE CV  + +Q WA+Y DG+IRVNS+R+ CV++    P  LI I KC GS  QRWVF  + TI NP + L+M+V    VS  KIILY   G  +Q
Subjt:  NAKVWLEKCVEKKAEQYWAVYSDGSIRVNSSRNFCVSAASDSPGGLITITKCNGSSKQRWVFMADATILNPKSGLVMEVEGSQVSRNKIILYPIKGRSSQ

Query:  QW
        QW
Subjt:  QW

Q9M653 Ribosome-inactivating protein PMRIPt2.2e-2248.08Show/hide
Query:  DNNAKVWLEKCVEKKAEQYWAVYSDGSIRVNSSRNFCVSAASDSPGGLITITKCNGSSKQRWVFMADATILNPKSGLVMEVEGSQVSRNKIILYPIKGRS
        +NN +VWLE C   + +Q+WA+YSDG+IRV+S R+ CV++   S    I I  C+G   QR VF  D TILNP + LVM+V  S V+  +IILY   G  
Subjt:  DNNAKVWLEKCVEKKAEQYWAVYSDGSIRVNSSRNFCVSAASDSPGGLITITKCNGSSKQRWVFMADATILNPKSGLVMEVEGSQVSRNKIILYPIKGRS

Query:  SQQW
        +QQW
Subjt:  SQQW

U3KRF8 Seed lectin (Fragments)7.6e-2348.65Show/hide
Query:  DNNAKVWLEKCVEKKAEQYWAVYSDGSIRVNSSRNFCVSAASDSPGG--LITITKCNGSSKQRWVFMADATILNP-KSGLVMEVEGSQVSRNKIILYPIK
        D N  +WLE+CV  + EQ WA+YSDG+IRV+ +R  CV+A+S +     +ITI  C+GS+ QRWVF+AD +I  P    L M+V  S V   KIIL+   
Subjt:  DNNAKVWLEKCVEKKAEQYWAVYSDGSIRVNSSRNFCVSAASDSPGG--LITITKCNGSSKQRWVFMADATILNP-KSGLVMEVEGSQVSRNKIILYPIK

Query:  GRSSQQWTLFY
        G  +QQW LFY
Subjt:  GRSSQQWTLFY

Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGATAACAATGCAAAGGTTTGGTTGGAGAAGTGTGTGGAGAAGAAGGCAGAGCAATATTGGGCGGTTTATAGTGATGGAAGTATAAGAGTAAATAGTAGCCGTAATTT
CTGTGTGTCGGCAGCTTCAGATTCGCCAGGGGGGCTTATTACCATCACTAAGTGCAATGGATCATCAAAGCAACGATGGGTTTTCATGGCGGATGCCACAATTTTGAACC
CCAAATCTGGGTTGGTCATGGAGGTTGAAGGCTCTCAAGTTTCCCGAAACAAAATTATTTTATACCCCATAAAGGGTCGTTCTAGCCAACAATGGACTTTGTTCTACTAA
mRNA sequenceShow/hide mRNA sequence
ATGGATAACAATGCAAAGGTTTGGTTGGAGAAGTGTGTGGAGAAGAAGGCAGAGCAATATTGGGCGGTTTATAGTGATGGAAGTATAAGAGTAAATAGTAGCCGTAATTT
CTGTGTGTCGGCAGCTTCAGATTCGCCAGGGGGGCTTATTACCATCACTAAGTGCAATGGATCATCAAAGCAACGATGGGTTTTCATGGCGGATGCCACAATTTTGAACC
CCAAATCTGGGTTGGTCATGGAGGTTGAAGGCTCTCAAGTTTCCCGAAACAAAATTATTTTATACCCCATAAAGGGTCGTTCTAGCCAACAATGGACTTTGTTCTACTAA
Protein sequenceShow/hide protein sequence
MDNNAKVWLEKCVEKKAEQYWAVYSDGSIRVNSSRNFCVSAASDSPGGLITITKCNGSSKQRWVFMADATILNPKSGLVMEVEGSQVSRNKIILYPIKGRSSQQWTLFY