CuGenDBv2

Gene ID	CmoCh17G005810
Organism	Cucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
Description	Ribosomal L18p/L5e family protein
Genome location	Cmo_Chr17:6007931..6008311
RNA-Seq Expression	CmoCh17G005810
Synteny	CmoCh17G005810
Gene Ontology terms	GO:0006412 - translation (biological process) GO:0005737 - cytoplasm (cellular component) GO:0005840 - ribosome (cellular component) GO:0003735 - structural constituent of ribosome (molecular function) GO:0008097 - 5S rRNA binding (molecular function)
InterPro domains	IPR005484 - Ribosomal protein L18

Homology

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GenBank top hits

e value

%identity

Alignment

KAE8646622.1 hypothetical protein Csa_005380 [Cucumis sativus]

1.2e-53

91.06

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Query:  MSINQNHLLRLVLSCRKITAQVTNPDTSTIIAMASSSEQEFVAYNRSKLHRFPRSNNFWDSKIASRVGEKLGHRLKEIGVSDVRIDLAEELSRPVSYRNR
        MSINQNHLLRLVLSCRKITAQVTNP TS+IIAMASSSEQEFVAY RSKLHRFPRSNNFWDSK+ASRVGEKLGHRLKEIGVSDVRIDLAEELSRP+ YR  
Subjt:  MSINQNHLLRLVLSCRKITAQVTNPDTSTIIAMASSSEQEFVAYNRSKLHRFPRSNNFWDSKIASRVGEKLGHRLKEIGVSDVRIDLAEELSRPVSYRNR

Query:  VLPLFDSVRRSGVAVNGAEKLGS
        VLPLFDSV+RSGVAV+GAEKLG+
Subjt:  VLPLFDSVRRSGVAVNGAEKLGS

XP_004140885.1 uncharacterized protein LOC101204363 [Cucumis sativus]

8.4e-55

90.48

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Query:  MSINQNHLLRLVLSCRKITAQVTNPDTSTIIAMASSSEQEFVAYNRSKLHRFPRSNNFWDSKIASRVGEKLGHRLKEIGVSDVRIDLAEELSRPVSYRNR
        MSINQNHLLRLVLSCRKITAQVTNP TS+IIAMASSSEQEFVAY RSKLHRFPRSNNFWDSK+ASRVGEKLGHRLKEIGVSDVRIDLAEELSRP+ YR  
Subjt:  MSINQNHLLRLVLSCRKITAQVTNPDTSTIIAMASSSEQEFVAYNRSKLHRFPRSNNFWDSKIASRVGEKLGHRLKEIGVSDVRIDLAEELSRPVSYRNR

Query:  VLPLFDSVRRSGVAVNGAEKLGSGAI
        VLPLFDSV+RSGVAV+GAEKLG+G+I
Subjt:  VLPLFDSVRRSGVAVNGAEKLGSGAI

XP_022929860.1 uncharacterized protein LOC111436340 [Cucurbita moschata]

3.5e-61

100

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Query:  MSINQNHLLRLVLSCRKITAQVTNPDTSTIIAMASSSEQEFVAYNRSKLHRFPRSNNFWDSKIASRVGEKLGHRLKEIGVSDVRIDLAEELSRPVSYRNR
        MSINQNHLLRLVLSCRKITAQVTNPDTSTIIAMASSSEQEFVAYNRSKLHRFPRSNNFWDSKIASRVGEKLGHRLKEIGVSDVRIDLAEELSRPVSYRNR
Subjt:  MSINQNHLLRLVLSCRKITAQVTNPDTSTIIAMASSSEQEFVAYNRSKLHRFPRSNNFWDSKIASRVGEKLGHRLKEIGVSDVRIDLAEELSRPVSYRNR

Query:  VLPLFDSVRRSGVAVNGAEKLGSGAI
        VLPLFDSVRRSGVAVNGAEKLGSGAI
Subjt:  VLPLFDSVRRSGVAVNGAEKLGSGAI

XP_022992443.1 uncharacterized protein LOC111488745 [Cucurbita maxima]

5.6e-59

97.62

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Query:  MSINQNHLLRLVLSCRKITAQVTNPDTSTIIAMASSSEQEFVAYNRSKLHRFPRSNNFWDSKIASRVGEKLGHRLKEIGVSDVRIDLAEELSRPVSYRNR
        MSINQNHLLRLVLSCRKITAQVTNPDTSTIIAMASSSEQEFVAY  SKLHRFPRSNNFWDSKIASRVGEKLGHRLKEIGVSDVRIDLAEELSRPV YRNR
Subjt:  MSINQNHLLRLVLSCRKITAQVTNPDTSTIIAMASSSEQEFVAYNRSKLHRFPRSNNFWDSKIASRVGEKLGHRLKEIGVSDVRIDLAEELSRPVSYRNR

Query:  VLPLFDSVRRSGVAVNGAEKLGSGAI
        VLPLFDSVRRSGVAVNGAEKLGSGAI
Subjt:  VLPLFDSVRRSGVAVNGAEKLGSGAI

XP_023548825.1 uncharacterized protein LOC111807360 [Cucurbita pepo subsp. pepo]

1.5e-59

98.41

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Query:  MSINQNHLLRLVLSCRKITAQVTNPDTSTIIAMASSSEQEFVAYNRSKLHRFPRSNNFWDSKIASRVGEKLGHRLKEIGVSDVRIDLAEELSRPVSYRNR
        MSINQNHLLRLVLSCRKITAQVTNPDTSTIIAMASSSEQEFVAY RSKLHRFPRSNNFWDSKIASRVGEKLGHRLKEIGVSDVRIDLAEELSRPV YRNR
Subjt:  MSINQNHLLRLVLSCRKITAQVTNPDTSTIIAMASSSEQEFVAYNRSKLHRFPRSNNFWDSKIASRVGEKLGHRLKEIGVSDVRIDLAEELSRPVSYRNR

Query:  VLPLFDSVRRSGVAVNGAEKLGSGAI
        VLPLFDSVRRSGVAVNGAEKLGSGAI
Subjt:  VLPLFDSVRRSGVAVNGAEKLGSGAI

TrEMBL top hits

e value

%identity

Alignment

A0A0A0KE39 Uncharacterized protein

4.1e-55

90.48

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Query:  MSINQNHLLRLVLSCRKITAQVTNPDTSTIIAMASSSEQEFVAYNRSKLHRFPRSNNFWDSKIASRVGEKLGHRLKEIGVSDVRIDLAEELSRPVSYRNR
        MSINQNHLLRLVLSCRKITAQVTNP TS+IIAMASSSEQEFVAY RSKLHRFPRSNNFWDSK+ASRVGEKLGHRLKEIGVSDVRIDLAEELSRP+ YR  
Subjt:  MSINQNHLLRLVLSCRKITAQVTNPDTSTIIAMASSSEQEFVAYNRSKLHRFPRSNNFWDSKIASRVGEKLGHRLKEIGVSDVRIDLAEELSRPVSYRNR

Query:  VLPLFDSVRRSGVAVNGAEKLGSGAI
        VLPLFDSV+RSGVAV+GAEKLG+G+I
Subjt:  VLPLFDSVRRSGVAVNGAEKLGSGAI

A0A1S4DVU4 uncharacterized protein LOC103488672

1.7e-53

88.1

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Query:  MSINQNHLLRLVLSCRKITAQVTNPDTSTIIAMASSSEQEFVAYNRSKLHRFPRSNNFWDSKIASRVGEKLGHRLKEIGVSDVRIDLAEELSRPVSYRNR
        MSINQNHLLRLVLSCRKITAQVTNP TS+IIAMASSSEQEFVAY RSKLHRFPRSNNFWDSK+ASRVG KLGHRLKEIGVSDVRIDLAEELSRP+ YR  
Subjt:  MSINQNHLLRLVLSCRKITAQVTNPDTSTIIAMASSSEQEFVAYNRSKLHRFPRSNNFWDSKIASRVGEKLGHRLKEIGVSDVRIDLAEELSRPVSYRNR

Query:  VLPLFDSVRRSGVAVNGAEKLGSGAI
        VLPLFDSV+RSG+AV+G EKLG G+I
Subjt:  VLPLFDSVRRSGVAVNGAEKLGSGAI

A0A5D3BWW4 Uncharacterized protein

1.7e-53

88.1

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Query:  MSINQNHLLRLVLSCRKITAQVTNPDTSTIIAMASSSEQEFVAYNRSKLHRFPRSNNFWDSKIASRVGEKLGHRLKEIGVSDVRIDLAEELSRPVSYRNR
        MSINQNHLLRLVLSCRKITAQVTNP TS+IIAMASSSEQEFVAY RSKLHRFPRSNNFWDSK+ASRVG KLGHRLKEIGVSDVRIDLAEELSRP+ YR  
Subjt:  MSINQNHLLRLVLSCRKITAQVTNPDTSTIIAMASSSEQEFVAYNRSKLHRFPRSNNFWDSKIASRVGEKLGHRLKEIGVSDVRIDLAEELSRPVSYRNR

Query:  VLPLFDSVRRSGVAVNGAEKLGSGAI
        VLPLFDSV+RSG+AV+G EKLG G+I
Subjt:  VLPLFDSVRRSGVAVNGAEKLGSGAI

A0A6J1EVG7 uncharacterized protein LOC111436340

1.7e-61

100

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Query:  MSINQNHLLRLVLSCRKITAQVTNPDTSTIIAMASSSEQEFVAYNRSKLHRFPRSNNFWDSKIASRVGEKLGHRLKEIGVSDVRIDLAEELSRPVSYRNR
        MSINQNHLLRLVLSCRKITAQVTNPDTSTIIAMASSSEQEFVAYNRSKLHRFPRSNNFWDSKIASRVGEKLGHRLKEIGVSDVRIDLAEELSRPVSYRNR
Subjt:  MSINQNHLLRLVLSCRKITAQVTNPDTSTIIAMASSSEQEFVAYNRSKLHRFPRSNNFWDSKIASRVGEKLGHRLKEIGVSDVRIDLAEELSRPVSYRNR

Query:  VLPLFDSVRRSGVAVNGAEKLGSGAI
        VLPLFDSVRRSGVAVNGAEKLGSGAI
Subjt:  VLPLFDSVRRSGVAVNGAEKLGSGAI

A0A6J1JZ79 uncharacterized protein LOC111488745

2.7e-59

97.62

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Query:  MSINQNHLLRLVLSCRKITAQVTNPDTSTIIAMASSSEQEFVAYNRSKLHRFPRSNNFWDSKIASRVGEKLGHRLKEIGVSDVRIDLAEELSRPVSYRNR
        MSINQNHLLRLVLSCRKITAQVTNPDTSTIIAMASSSEQEFVAY  SKLHRFPRSNNFWDSKIASRVGEKLGHRLKEIGVSDVRIDLAEELSRPV YRNR
Subjt:  MSINQNHLLRLVLSCRKITAQVTNPDTSTIIAMASSSEQEFVAYNRSKLHRFPRSNNFWDSKIASRVGEKLGHRLKEIGVSDVRIDLAEELSRPVSYRNR

Query:  VLPLFDSVRRSGVAVNGAEKLGSGAI
        VLPLFDSVRRSGVAVNGAEKLGSGAI
Subjt:  VLPLFDSVRRSGVAVNGAEKLGSGAI

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT2G43310.1 Ribosomal L18p/L5e family protein

1.1e-41

70.34

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Query:  NQNHLLRLVLSCRKITAQVTNPDTSTIIAMASSSEQEFVAYNRSKLHRFPRSNNFWDSKIASRVGEKLGHRLKEIGVSDVRIDLAEELSRPVSYRNRVLP
        +++HLL+LVLSCRKITAQVT P +STIIAMASSSEQEF+A +R+ L+RFP SN+FWDSK ASRVGEKLG RL+E+GV  V ID  EE+SRP+ +R RVLP
Subjt:  NQNHLLRLVLSCRKITAQVTNPDTSTIIAMASSSEQEFVAYNRSKLHRFPRSNNFWDSKIASRVGEKLGHRLKEIGVSDVRIDLAEELSRPVSYRNRVLP

Query:  LFDSVRRSGVAVNGAEKL
        LFDSVRR+G+ V+G E+L
Subjt:  LFDSVRRSGVAVNGAEKL

Sequences

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CDS sequence

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ATGTCCATTAACCAGAACCACCTCCTCCGCCTGGTTCTTTCCTGCCGGAAAATCACCGCTCAGGTCACCAATCCAGACACCTCCACTATCATCGCTATGGCATCTTCCTC
CGAGCAGGAATTCGTCGCCTATAACCGCTCTAAACTCCACCGCTTTCCTCGATCCAACAACTTTTGGGACTCCAAAATCGCCTCTCGCGTCGGCGAAAAGCTCGGCCACC
GTTTGAAGGAGATCGGTGTCTCCGATGTTCGGATTGATCTTGCCGAAGAACTTTCCCGCCCTGTGTCCTATCGAAATAGGGTTCTGCCGCTCTTCGATTCTGTTCGGCGC
TCCGGCGTCGCCGTCAATGGTGCTGAGAAGCTCGGATCAGGTGCGATTTAG

mRNA sequence

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Protein sequence

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MSINQNHLLRLVLSCRKITAQVTNPDTSTIIAMASSSEQEFVAYNRSKLHRFPRSNNFWDSKIASRVGEKLGHRLKEIGVSDVRIDLAEELSRPVSYRNRVLPLFDSVRR
SGVAVNGAEKLGSGAI

CmoCh17G005810 (gene) of Cucurbita moschata (Rifu) v1 genome