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CmoCh17G005940 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh17G005940
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
DescriptionDNA-directed RNA polymerase subunit beta
Genome locationCmo_Chr17:6301547..6304971
RNA-Seq ExpressionCmoCh17G005940
SyntenyCmoCh17G005940
Gene Ontology termsGO:0006351 - transcription, DNA-templated (biological process)
GO:0006754 - ATP biosynthetic process (biological process)
GO:1902600 - proton transmembrane transport (biological process)
GO:0005840 - ribosome (cellular component)
GO:0009507 - chloroplast (cellular component)
GO:0045259 - proton-transporting ATP synthase complex (cellular component)
GO:0031090 - organelle membrane (cellular component)
GO:0033177 - proton-transporting two-sector ATPase complex, proton-transporting domain (cellular component)
GO:0015078 - proton transmembrane transporter activity (molecular function)
GO:0032559 - adenyl ribonucleotide binding (molecular function)
GO:0032549 - ribonucleoside binding (molecular function)
GO:0000287 - magnesium ion binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
GO:0003899 - DNA-directed 5'-3' RNA polymerase activity (molecular function)
GO:0003677 - DNA binding (molecular function)
InterPro domainsIPR044893 - RNA polymerase Rpb1, clamp domain superfamily
IPR015712 - DNA-directed RNA polymerase, subunit 2


Homology Show/hide homology
GenBank top hitse value%identityAlignment
BBN69361.1 hypothetical protein Prudu_904S000200, partial [Prunus dulcis]1.3e-6190.15Show/hide
Query:  MLTYKSDHIRARQEVLGTTIIGGTIPKPEDTPESFQLLVRELRSLALELNHFLKIFSMIDRYKHQQLRIGLVSPRQISAWANKTLPNGEIVGEVTKPYTF
        MLTYKSDHIRARQEVLGTTIIGGTIPKPED PESF+LLVRELRSLALELNHFL        YKHQQLRIGLVSP+QISAWA K LPNGEIVGEVTKPYTF
Subjt:  MLTYKSDHIRARQEVLGTTIIGGTIPKPEDTPESFQLLVRELRSLALELNHFLKIFSMIDRYKHQQLRIGLVSPRQISAWANKTLPNGEIVGEVTKPYTF

Query:  HYKTNKPEKDGLFCERIFGPIKSGICACGNYR
        HYKTNKPEKDGLFCERIFGPIKSGICACGNYR
Subjt:  HYKTNKPEKDGLFCERIFGPIKSGICACGNYR

EFH63122.1 hypothetical protein ARALYDRAFT_893971 [Arabidopsis lyrata subsp. lyrata]1.4e-6087.41Show/hide
Query:  MLTYKSDHIRARQEVLGTTIIGGTIPKPEDTPESFQLLVRELRSL---ALELNHFLKIFSMIDRYKHQQLRIGLVSPRQISAWANKTLPNGEIVGEVTKP
        MLTYKSDHIRARQEVLGTTIIGGTIPKPED PESF+LLVRELRSL    + +NH  KI  MIDRYKHQQLRIGLVSP+QISAWA K +PNGEIVGEVTKP
Subjt:  MLTYKSDHIRARQEVLGTTIIGGTIPKPEDTPESFQLLVRELRSL---ALELNHFLKIFSMIDRYKHQQLRIGLVSPRQISAWANKTLPNGEIVGEVTKP

Query:  YTFHYKTNKPEKDGLFCERIFGPIKSGICACGNYR
        YTFHYKTNKPEKDGLFCERIFGPIKSGICACGNYR
Subjt:  YTFHYKTNKPEKDGLFCERIFGPIKSGICACGNYR

EPS74480.1 hypothetical protein M569_00269, partial [Genlisea aurea]4.9e-6184.4Show/hide
Query:  MLTYKSDHIRARQEVLGTTIIGGTIPKPEDTPESFQLLVRELRSLALELNHFLK---------IFSMIDRYKHQQLRIGLVSPRQISAWANKTLPNGEIV
        MLTYKSDHIRARQEVLGTTIIGGTIP P+DTPESF+LLVRELRSLALELNH L+           SMIDRYKHQQLRIGLVSP QI AWA K LPNG+IV
Subjt:  MLTYKSDHIRARQEVLGTTIIGGTIPKPEDTPESFQLLVRELRSLALELNHFLK---------IFSMIDRYKHQQLRIGLVSPRQISAWANKTLPNGEIV

Query:  GEVTKPYTFHYKTNKPEKDGLFCERIFGPIKSGICACGNYR
        GEVTKPYTFHYKTNKPE DGLFCERIFGPIKSGICACGNYR
Subjt:  GEVTKPYTFHYKTNKPEKDGLFCERIFGPIKSGICACGNYR

KAG9438748.1 hypothetical protein H6P81_021286 [Aristolochia fimbriata]3.2e-6083.69Show/hide
Query:  MLTYKSDHIRARQEVLGTTIIGGTIPKPEDTPESFQLLVRELRSLALELNHFL---------KIFSMIDRYKHQQLRIGLVSPRQISAWANKTLPNGEIV
        MLTYKSDHIRARQEVLGT IIGGTIP  ED PESF+LLVRELRSLALELNHFL            SMIDRYKHQQLRIG VSP+QIS WA K LPNGEIV
Subjt:  MLTYKSDHIRARQEVLGTTIIGGTIPKPEDTPESFQLLVRELRSLALELNHFL---------KIFSMIDRYKHQQLRIGLVSPRQISAWANKTLPNGEIV

Query:  GEVTKPYTFHYKTNKPEKDGLFCERIFGPIKSGICACGNYR
        GEVTKPYTFHYKTNKPEKDGLFCERIFGPIKSGICACGN+R
Subjt:  GEVTKPYTFHYKTNKPEKDGLFCERIFGPIKSGICACGNYR

XP_027186860.1 LOW QUALITY PROTEIN: uncharacterized protein LOC113784808 [Cicer arietinum]5.9e-5986.03Show/hide
Query:  MLTYKSDHIRARQEVLGTTIIGGTIPKPEDTPESFQLLVRELRSLALELNHFL---KIFSMIDR-YKHQQLRIGLVSPRQISAWANKTLPNGEIVGEVTK
        MLTYKSDHI+ARQEVLGTTIIGGTIPKP D PESF+LLVRELRSLALELNHFL   K F +  + YKHQ LRIGLVSP QISAWA K LPNGEIVGEVTK
Subjt:  MLTYKSDHIRARQEVLGTTIIGGTIPKPEDTPESFQLLVRELRSLALELNHFL---KIFSMIDR-YKHQQLRIGLVSPRQISAWANKTLPNGEIVGEVTK

Query:  PYTFHYKTNKPEKDGLFCERIFGPIKSGICACGNYR
        PYT HYKTNKPEKDGLFCERIFGPIKSGICACGNYR
Subjt:  PYTFHYKTNKPEKDGLFCERIFGPIKSGICACGNYR

TrEMBL top hitse value%identityAlignment
A0A1Y3BYX7 Multifunctional fusion protein2.0e-6082.98Show/hide
Query:  MLTYKSDHIRARQEVLGTTIIGGTIPKPEDTPESFQLLVRELRSLALELNHFL---------KIFSMIDRYKHQQLRIGLVSPRQISAWANKTLPNGEIV
        MLTYKSDHIRARQEVLGT I GG IP PED PESF+L VRELRSLALELNHFL         K  SMIDRY HQQLRIGLVSP+QIS W+ K LPNGEIV
Subjt:  MLTYKSDHIRARQEVLGTTIIGGTIPKPEDTPESFQLLVRELRSLALELNHFL---------KIFSMIDRYKHQQLRIGLVSPRQISAWANKTLPNGEIV

Query:  GEVTKPYTFHYKTNKPEKDGLFCERIFGPIKSGICACGNYR
        GEVTKPYTFHYKTNKPEKDGLFCERIFGPIKSGICACGNYR
Subjt:  GEVTKPYTFHYKTNKPEKDGLFCERIFGPIKSGICACGNYR

A0A251SW80 DNA-directed RNA polymerase subunit2.0e-6082.98Show/hide
Query:  MLTYKSDHIRARQEVLGTTIIGGTIPKPEDTPESFQLLVRELRSLALELNHFL---------KIFSMIDRYKHQQLRIGLVSPRQISAWANKTLPNGEIV
        MLTYKSDHIRARQEVLGT I GG IP PED PESF+L VRELRSLALELNHFL         K  SMIDRY HQQLRIGLVSP+QIS W+ K LPNGEIV
Subjt:  MLTYKSDHIRARQEVLGTTIIGGTIPKPEDTPESFQLLVRELRSLALELNHFL---------KIFSMIDRYKHQQLRIGLVSPRQISAWANKTLPNGEIV

Query:  GEVTKPYTFHYKTNKPEKDGLFCERIFGPIKSGICACGNYR
        GEVTKPYTFHYKTNKPEKDGLFCERIFGPIKSGICACGNYR
Subjt:  GEVTKPYTFHYKTNKPEKDGLFCERIFGPIKSGICACGNYR

A0A5H2Y107 Multifunctional fusion protein (Fragment)6.2e-6290.15Show/hide
Query:  MLTYKSDHIRARQEVLGTTIIGGTIPKPEDTPESFQLLVRELRSLALELNHFLKIFSMIDRYKHQQLRIGLVSPRQISAWANKTLPNGEIVGEVTKPYTF
        MLTYKSDHIRARQEVLGTTIIGGTIPKPED PESF+LLVRELRSLALELNHFL        YKHQQLRIGLVSP+QISAWA K LPNGEIVGEVTKPYTF
Subjt:  MLTYKSDHIRARQEVLGTTIIGGTIPKPEDTPESFQLLVRELRSLALELNHFLKIFSMIDRYKHQQLRIGLVSPRQISAWANKTLPNGEIVGEVTKPYTF

Query:  HYKTNKPEKDGLFCERIFGPIKSGICACGNYR
        HYKTNKPEKDGLFCERIFGPIKSGICACGNYR
Subjt:  HYKTNKPEKDGLFCERIFGPIKSGICACGNYR

D7KRC2 Multifunctional fusion protein6.9e-6187.41Show/hide
Query:  MLTYKSDHIRARQEVLGTTIIGGTIPKPEDTPESFQLLVRELRSL---ALELNHFLKIFSMIDRYKHQQLRIGLVSPRQISAWANKTLPNGEIVGEVTKP
        MLTYKSDHIRARQEVLGTTIIGGTIPKPED PESF+LLVRELRSL    + +NH  KI  MIDRYKHQQLRIGLVSP+QISAWA K +PNGEIVGEVTKP
Subjt:  MLTYKSDHIRARQEVLGTTIIGGTIPKPEDTPESFQLLVRELRSL---ALELNHFLKIFSMIDRYKHQQLRIGLVSPRQISAWANKTLPNGEIVGEVTKP

Query:  YTFHYKTNKPEKDGLFCERIFGPIKSGICACGNYR
        YTFHYKTNKPEKDGLFCERIFGPIKSGICACGNYR
Subjt:  YTFHYKTNKPEKDGLFCERIFGPIKSGICACGNYR

S8D4Z9 DNA-directed RNA polymerase subunit beta (Fragment)2.4e-6184.4Show/hide
Query:  MLTYKSDHIRARQEVLGTTIIGGTIPKPEDTPESFQLLVRELRSLALELNHFLK---------IFSMIDRYKHQQLRIGLVSPRQISAWANKTLPNGEIV
        MLTYKSDHIRARQEVLGTTIIGGTIP P+DTPESF+LLVRELRSLALELNH L+           SMIDRYKHQQLRIGLVSP QI AWA K LPNG+IV
Subjt:  MLTYKSDHIRARQEVLGTTIIGGTIPKPEDTPESFQLLVRELRSLALELNHFLK---------IFSMIDRYKHQQLRIGLVSPRQISAWANKTLPNGEIV

Query:  GEVTKPYTFHYKTNKPEKDGLFCERIFGPIKSGICACGNYR
        GEVTKPYTFHYKTNKPE DGLFCERIFGPIKSGICACGNYR
Subjt:  GEVTKPYTFHYKTNKPEKDGLFCERIFGPIKSGICACGNYR

SwissProt top hitse value%identityAlignment
A6MM27 DNA-directed RNA polymerase subunit beta'4.2e-3996Show/hide
Query:  MIDRYKHQQLRIGLVSPRQISAWANKTLPNGEIVGEVTKPYTFHYKTNKPEKDGLFCERIFGPIKSGICACGNYR
        MIDRYKHQQLRIGLVSP+QISAWANK LPNGEIVGEVTKPYTFHYKTNKPE+DGLFCERIFGPIKSGICACGNYR
Subjt:  MIDRYKHQQLRIGLVSPRQISAWANKTLPNGEIVGEVTKPYTFHYKTNKPEKDGLFCERIFGPIKSGICACGNYR

A9L987 DNA-directed RNA polymerase subunit beta'2.4e-3993.51Show/hide
Query:  FSMIDRYKHQQLRIGLVSPRQISAWANKTLPNGEIVGEVTKPYTFHYKTNKPEKDGLFCERIFGPIKSGICACGNYR
        +SMIDRYKHQQLRIG VSP+QISAWANK LPNGE+VGEVTKPYTFHYKTNKPEKDGLFCERIFGPIKSGICACGNYR
Subjt:  FSMIDRYKHQQLRIGLVSPRQISAWANKTLPNGEIVGEVTKPYTFHYKTNKPEKDGLFCERIFGPIKSGICACGNYR

B1A926 DNA-directed RNA polymerase subunit beta'4.2e-3996Show/hide
Query:  MIDRYKHQQLRIGLVSPRQISAWANKTLPNGEIVGEVTKPYTFHYKTNKPEKDGLFCERIFGPIKSGICACGNYR
        MIDRYKHQQLRIGLVSP+QISAWAN+ LPNGEIVGEVTKPYTFHYKTNKPEKDGLFCERIFGPIKSGICACGNYR
Subjt:  MIDRYKHQQLRIGLVSPRQISAWANKTLPNGEIVGEVTKPYTFHYKTNKPEKDGLFCERIFGPIKSGICACGNYR

Q4VZP2 DNA-directed RNA polymerase subunit beta'3.8e-4098.67Show/hide
Query:  MIDRYKHQQLRIGLVSPRQISAWANKTLPNGEIVGEVTKPYTFHYKTNKPEKDGLFCERIFGPIKSGICACGNYR
        MIDRYKHQQLRIGLVSP+QISAWANKTLPNGEIVGEVTKPYTFHYKTNKPEKDGLFCERIFGPIKSGICACGNYR
Subjt:  MIDRYKHQQLRIGLVSPRQISAWANKTLPNGEIVGEVTKPYTFHYKTNKPEKDGLFCERIFGPIKSGICACGNYR

Q7YJX9 DNA-directed RNA polymerase subunit beta'9.3e-3994.67Show/hide
Query:  MIDRYKHQQLRIGLVSPRQISAWANKTLPNGEIVGEVTKPYTFHYKTNKPEKDGLFCERIFGPIKSGICACGNYR
        MIDRYKHQQLRIG VSP+QI AWANKTLPNGEI+GEVTKPYTFHYKTNKPEKDGLFCERIFGPIKSGICACGNYR
Subjt:  MIDRYKHQQLRIGLVSPRQISAWANKTLPNGEIVGEVTKPYTFHYKTNKPEKDGLFCERIFGPIKSGICACGNYR

Arabidopsis top hitse value%identityAlignment
ATCG00180.1 DNA-directed RNA polymerase family protein1.1e-3994.67Show/hide
Query:  MIDRYKHQQLRIGLVSPRQISAWANKTLPNGEIVGEVTKPYTFHYKTNKPEKDGLFCERIFGPIKSGICACGNYR
        MIDRYKHQQLRIGLVSP+QISAWA K +PNGEIVGEVTKPYTFHYKTNKPEKDGLFCERIFGPIKSGICACGNYR
Subjt:  MIDRYKHQQLRIGLVSPRQISAWANKTLPNGEIVGEVTKPYTFHYKTNKPEKDGLFCERIFGPIKSGICACGNYR

ATCG00190.1 RNA polymerase subunit beta4.3e-2396.23Show/hide
Query:  MLTYKSDHIRARQEVLGTTIIGGTIPKPEDTPESFQLLVRELRSLALELNHFL
        MLTYKSDHIRARQEVLGTTIIGGTIPKPED PESF+LLVRELRSLALELNHFL
Subjt:  MLTYKSDHIRARQEVLGTTIIGGTIPKPEDTPESFQLLVRELRSLALELNHFL


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCTTACTTATAAATCTGATCATATTAGAGCTCGGCAAGAAGTACTTGGTACTACGATCATTGGAGGAACAATACCTAAACCTGAGGATACTCCAGAATCTTTTCAATT
GCTCGTTCGAGAATTACGATCTTTGGCTTTGGAACTGAATCATTTCCTTAAAATTTTTTCTATGATCGATCGGTATAAACATCAACAACTCCGAATTGGATTAGTTTCTC
CTCGACAAATAAGTGCTTGGGCCAATAAAACCCTACCTAATGGCGAGATAGTTGGAGAGGTAACAAAACCCTATACTTTTCATTACAAAACCAATAAACCTGAAAAAGAT
GGATTATTTTGTGAAAGAATTTTCGGGCCTATAAAAAGCGGGATTTGTGCTTGTGGAAATTATCGATACTAA
mRNA sequenceShow/hide mRNA sequence
ATGCTTACTTATAAATCTGATCATATTAGAGCTCGGCAAGAAGTACTTGGTACTACGATCATTGGAGGAACAATACCTAAACCTGAGGATACTCCAGAATCTTTTCAATT
GCTCGTTCGAGAATTACGATCTTTGGCTTTGGAACTGAATCATTTCCTTAAAATTTTTTCTATGATCGATCGGTATAAACATCAACAACTCCGAATTGGATTAGTTTCTC
CTCGACAAATAAGTGCTTGGGCCAATAAAACCCTACCTAATGGCGAGATAGTTGGAGAGGTAACAAAACCCTATACTTTTCATTACAAAACCAATAAACCTGAAAAAGAT
GGATTATTTTGTGAAAGAATTTTCGGGCCTATAAAAAGCGGGATTTGTGCTTGTGGAAATTATCGATACTAA
Protein sequenceShow/hide protein sequence
MLTYKSDHIRARQEVLGTTIIGGTIPKPEDTPESFQLLVRELRSLALELNHFLKIFSMIDRYKHQQLRIGLVSPRQISAWANKTLPNGEIVGEVTKPYTFHYKTNKPEKD
GLFCERIFGPIKSGICACGNYRY