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CmoCh17G006000 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh17G006000
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
DescriptionTrigger_N domain-containing protein
Genome locationCmo_Chr17:6376513..6377945
RNA-Seq ExpressionCmoCh17G006000
SyntenyCmoCh17G006000
Gene Ontology termsGO:0000413 - protein peptidyl-prolyl isomerization (biological process)
GO:0015031 - protein transport (biological process)
GO:0043335 - protein unfolding (biological process)
GO:0051083 - 'de novo' cotranslational protein folding (biological process)
GO:0061077 - chaperone-mediated protein folding (biological process)
GO:0003755 - peptidyl-prolyl cis-trans isomerase activity (molecular function)
GO:0043022 - ribosome binding (molecular function)
GO:0044183 - protein folding chaperone (molecular function)
InterPro domainsIPR005215 - Trigger factor
IPR036611 - Trigger factor ribosome-binding domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6575382.1 hypothetical protein SDJN03_26021, partial [Cucurbita argyrosperma subsp. sororia]1.6e-3188.76Show/hide
Query:  GKTPNIPREILLEILGPSKVYKQVIKEVINSTVAAYVEKCFFSILPMKQEALKVVKDLRIEQSYEDLEDQFEPDEKFFFDAIIQLNQTN
        GKTPNIPREILLEILGPSKVYKQVIKEVINSTVAAYVE         KQEALKV KDLRIEQSYEDLEDQFEPDEKFFFDAIIQLNQTN
Subjt:  GKTPNIPREILLEILGPSKVYKQVIKEVINSTVAAYVEKCFFSILPMKQEALKVVKDLRIEQSYEDLEDQFEPDEKFFFDAIIQLNQTN
XP_022953542.1 uncharacterized protein LOC111456053 isoform X1 [Cucurbita moschata]2.5e-3289.89Show/hide
Query:  GKTPNIPREILLEILGPSKVYKQVIKEVINSTVAAYVEKCFFSILPMKQEALKVVKDLRIEQSYEDLEDQFEPDEKFFFDAIIQLNQTN
        GKTPNIPREILLEILGPSKVYKQVIKEVINSTVAAYVE         KQEALKVVKDLRIEQSYEDLEDQFEPDEKFFFDAIIQLNQTN
Subjt:  GKTPNIPREILLEILGPSKVYKQVIKEVINSTVAAYVEKCFFSILPMKQEALKVVKDLRIEQSYEDLEDQFEPDEKFFFDAIIQLNQTN
XP_022953543.1 uncharacterized protein LOC111456053 isoform X2 [Cucurbita moschata]1.6e-3188.76Show/hide
Query:  GKTPNIPREILLEILGPSKVYKQVIKEVINSTVAAYVEKCFFSILPMKQEALKVVKDLRIEQSYEDLEDQFEPDEKFFFDAIIQLNQTN
        GKTPNIPREILLEILGPSKVYKQVIKEVINSTVAAYVEK          EALKVVKDLRIEQSYEDLEDQFEPDEKFFFDAIIQLNQTN
Subjt:  GKTPNIPREILLEILGPSKVYKQVIKEVINSTVAAYVEKCFFSILPMKQEALKVVKDLRIEQSYEDLEDQFEPDEKFFFDAIIQLNQTN
XP_022992398.1 uncharacterized protein LOC111488717 [Cucurbita maxima]1.0e-3087.64Show/hide
Query:  GKTPNIPREILLEILGPSKVYKQVIKEVINSTVAAYVEKCFFSILPMKQEALKVVKDLRIEQSYEDLEDQFEPDEKFFFDAIIQLNQTN
        GKTPNIPREILLEILGPSKVYKQVIKEVINSTVAAYVEK          EALKV KDLRIEQSYEDLEDQFEPDEKFFFDAIIQLNQTN
Subjt:  GKTPNIPREILLEILGPSKVYKQVIKEVINSTVAAYVEKCFFSILPMKQEALKVVKDLRIEQSYEDLEDQFEPDEKFFFDAIIQLNQTN
XP_023549254.1 uncharacterized protein LOC111807668 isoform X1 [Cucurbita pepo subsp. pepo]4.7e-3187.64Show/hide
Query:  GKTPNIPREILLEILGPSKVYKQVIKEVINSTVAAYVEKCFFSILPMKQEALKVVKDLRIEQSYEDLEDQFEPDEKFFFDAIIQLNQTN
        GKTPNIPREILLEILGPSKVYKQVIKEVINSTVAAYVE         KQEALKV KDLRIEQSYEDLE+QFEPDEKFFFDAIIQLNQTN
Subjt:  GKTPNIPREILLEILGPSKVYKQVIKEVINSTVAAYVEKCFFSILPMKQEALKVVKDLRIEQSYEDLEDQFEPDEKFFFDAIIQLNQTN
TrEMBL top hitse value%identityAlignment
A0A5D3DLR6 Trigger factor-like isoform X31.2e-2983.15Show/hide
Query:  GKTPNIPREILLEILGPSKVYKQVIKEVINSTVAAYVEKCFFSILPMKQEALKVVKDLRIEQSYEDLEDQFEPDEKFFFDAIIQLNQTN
        GKTPNIPR+ILLEILGPSKVYKQVIKEVINSTVAAYVE         KQEALKV KDLRI+QSYEDLEDQFEPDEKFFFDAIIQL ++N
Subjt:  GKTPNIPREILLEILGPSKVYKQVIKEVINSTVAAYVEKCFFSILPMKQEALKVVKDLRIEQSYEDLEDQFEPDEKFFFDAIIQLNQTN
A0A6J1DN00 uncharacterized protein LOC111022592 isoform X51.2e-2983.15Show/hide
Query:  GKTPNIPREILLEILGPSKVYKQVIKEVINSTVAAYVEKCFFSILPMKQEALKVVKDLRIEQSYEDLEDQFEPDEKFFFDAIIQLNQTN
        GKTPNIPR+ILLEILGPS+VYKQVIK+VINSTVAAYVE         KQEALKV KDLRIEQSYEDLEDQFEPDE FFFDAIIQLN+TN
Subjt:  GKTPNIPREILLEILGPSKVYKQVIKEVINSTVAAYVEKCFFSILPMKQEALKVVKDLRIEQSYEDLEDQFEPDEKFFFDAIIQLNQTN
A0A6J1GNI4 uncharacterized protein LOC111456053 isoform X11.2e-3289.89Show/hide
Query:  GKTPNIPREILLEILGPSKVYKQVIKEVINSTVAAYVEKCFFSILPMKQEALKVVKDLRIEQSYEDLEDQFEPDEKFFFDAIIQLNQTN
        GKTPNIPREILLEILGPSKVYKQVIKEVINSTVAAYVE         KQEALKVVKDLRIEQSYEDLEDQFEPDEKFFFDAIIQLNQTN
Subjt:  GKTPNIPREILLEILGPSKVYKQVIKEVINSTVAAYVEKCFFSILPMKQEALKVVKDLRIEQSYEDLEDQFEPDEKFFFDAIIQLNQTN
A0A6J1GNL4 uncharacterized protein LOC111456053 isoform X27.8e-3288.76Show/hide
Query:  GKTPNIPREILLEILGPSKVYKQVIKEVINSTVAAYVEKCFFSILPMKQEALKVVKDLRIEQSYEDLEDQFEPDEKFFFDAIIQLNQTN
        GKTPNIPREILLEILGPSKVYKQVIKEVINSTVAAYVEK          EALKVVKDLRIEQSYEDLEDQFEPDEKFFFDAIIQLNQTN
Subjt:  GKTPNIPREILLEILGPSKVYKQVIKEVINSTVAAYVEKCFFSILPMKQEALKVVKDLRIEQSYEDLEDQFEPDEKFFFDAIIQLNQTN
A0A6J1JZ32 uncharacterized protein LOC1114887175.1e-3187.64Show/hide
Query:  GKTPNIPREILLEILGPSKVYKQVIKEVINSTVAAYVEKCFFSILPMKQEALKVVKDLRIEQSYEDLEDQFEPDEKFFFDAIIQLNQTN
        GKTPNIPREILLEILGPSKVYKQVIKEVINSTVAAYVEK          EALKV KDLRIEQSYEDLEDQFEPDEKFFFDAIIQLNQTN
Subjt:  GKTPNIPREILLEILGPSKVYKQVIKEVINSTVAAYVEKCFFSILPMKQEALKVVKDLRIEQSYEDLEDQFEPDEKFFFDAIIQLNQTN
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT2G30695.1 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: protein folding, protein transport; LOCATED IN: chloroplast stroma, chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Trigger factor, ribosome-binding, bacterial (InterPro:IPR008881); Has 253 Blast hits to 253 proteins in 72 species: Archae - 0; Bacteria - 138; Metazoa - 0; Fungi - 0; Plants - 40; Viruses - 0; Other Eukaryotes - 75 (source: NCBI BLink).1.8e-2058.43Show/hide
Query:  GKTPNIPREILLEILGPSKVYKQVIKEVINSTVAAYVEKCFFSILPMKQEALKVVKDLRIEQSYEDLEDQFEPDEKFFFDAIIQLNQTN
        GKTPNIP+++LLEILG SKVYKQVIK++INS +  YV          KQE LKV K+L + QSYEDLE+ FEP E F FDA I+L + +
Subjt:  GKTPNIPREILLEILGPSKVYKQVIKEVINSTVAAYVEKCFFSILPMKQEALKVVKDLRIEQSYEDLEDQFEPDEKFFFDAIIQLNQTN
AT2G30695.2 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: protein folding, protein transport; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Trigger factor, ribosome-binding, bacterial (InterPro:IPR008881); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).1.8e-2058.43Show/hide
Query:  GKTPNIPREILLEILGPSKVYKQVIKEVINSTVAAYVEKCFFSILPMKQEALKVVKDLRIEQSYEDLEDQFEPDEKFFFDAIIQLNQTN
        GKTPNIP+++LLEILG SKVYKQVIK++INS +  YV          KQE LKV K+L + QSYEDLE+ FEP E F FDA I+L + +
Subjt:  GKTPNIPREILLEILGPSKVYKQVIKEVINSTVAAYVEKCFFSILPMKQEALKVVKDLRIEQSYEDLEDQFEPDEKFFFDAIIQLNQTN

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCAGGAAAGACGCCGAATATACCTCGGGAAATTCTATTAGAGATACTCGGACCCTCGAAGGTGTACAAACAAGTTATTAAGGAAGTTATCAACTCTACTGTTGCTGC
ATATGTGGAAAAGTGTTTTTTCTCTATTTTACCAATGAAGCAGGAAGCTCTAAAAGTGGTCAAAGACTTGAGAATAGAACAAAGCTATGAGGATCTTGAAGACCAATTTG
AACCAGATGAAAAGTTCTTTTTTGATGCCATTATTCAGCTCAACCAAACAAACTGA
mRNA sequenceShow/hide mRNA sequence
ATGTCAGGAAAGACGCCGAATATACCTCGGGAAATTCTATTAGAGATACTCGGACCCTCGAAGGTGTACAAACAAGTTATTAAGGAAGTTATCAACTCTACTGTTGCTGC
ATATGTGGAAAAGTGTTTTTTCTCTATTTTACCAATGAAGCAGGAAGCTCTAAAAGTGGTCAAAGACTTGAGAATAGAACAAAGCTATGAGGATCTTGAAGACCAATTTG
AACCAGATGAAAAGTTCTTTTTTGATGCCATTATTCAGCTCAACCAAACAAACTGA
Protein sequenceShow/hide protein sequence
MSGKTPNIPREILLEILGPSKVYKQVIKEVINSTVAAYVEKCFFSILPMKQEALKVVKDLRIEQSYEDLEDQFEPDEKFFFDAIIQLNQTN