CuGenDBv2

Gene ID	CmoCh17G006010
Organism	Cucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
Description	Trigger factor-like isoform X1
Genome location	Cmo_Chr17:6378181..6380611
RNA-Seq Expression	CmoCh17G006010
Synteny	CmoCh17G006010
Gene Ontology terms	GO:0000413 - protein peptidyl-prolyl isomerization (biological process) GO:0015031 - protein transport (biological process) GO:0043335 - protein unfolding (biological process) GO:0051083 - 'de novo' cotranslational protein folding (biological process) GO:0061077 - chaperone-mediated protein folding (biological process) GO:0003755 - peptidyl-prolyl cis-trans isomerase activity (molecular function) GO:0043022 - ribosome binding (molecular function) GO:0044183 - protein folding chaperone (molecular function)
InterPro domains	IPR005215 - Trigger factor

Homology

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GenBank top hits

e value

%identity

Alignment

KAG6575382.1 hypothetical protein SDJN03_26021, partial [Cucurbita argyrosperma subsp. sororia]

2.0e-63

93.53

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Query:  MQIAATNFFLSANPKAIYHKQTADCFTPNLTSISVSFPSQMGYGSRKISVSKSNRYLPAACAALSEDVSVSSSQFEDFSVTKATNINENKELKICIEVSG
        MQIAATNFFLSANPKAIYHKQTADCFTPNLTSISVSFPSQMGYG RK+SVSKSNRYLPAACAALSEDVSVSSSQFEDFSVTKATNINENKELKICIEVSG
Subjt:  MQIAATNFFLSANPKAIYHKQTADCFTPNLTSISVSFPSQMGYGSRKISVSKSNRYLPAACAALSEDVSVSSSQFEDFSVTKATNINENKELKICIEVSG

Query:  AKTRAIFDNVFNEMVDKAQPIPGFRRAKGG---NIQRRV
        AKTRAIFD VFNEMVDKAQPIPGFRRAKGG   NI R +
Subjt:  AKTRAIFDNVFNEMVDKAQPIPGFRRAKGG---NIQRRV

KAG7013921.1 hypothetical protein SDJN02_24090 [Cucurbita argyrosperma subsp. argyrosperma]

3.5e-76

99.33

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Query:  MQIAATNFFLSANPKAIYHKQTADCFTPNLTSISVSFPSQMGYGSRKISVSKSNRYLPAACAALSEDVSVSSSQFEDFSVTKATNINENKELKICIEVSG
        MQIAATNFFLSANPKAIYHKQTADCFTPNLTSISVSFPSQMGYGSRKISVSKSNRYLPAACAALSEDVSVSSSQFEDFSVTKATNINENKELKICIEVSG
Subjt:  MQIAATNFFLSANPKAIYHKQTADCFTPNLTSISVSFPSQMGYGSRKISVSKSNRYLPAACAALSEDVSVSSSQFEDFSVTKATNINENKELKICIEVSG

Query:  AKTRAIFDNVFNEMVDKAQPIPGFRRAKGGNIQRRVSYSSCSWLSFLFYQ
        AKTRAIFD VFNEMVDKAQPIPGFRRAKGGNIQRRVSYSSCSWLSFLFYQ
Subjt:  AKTRAIFDNVFNEMVDKAQPIPGFRRAKGGNIQRRVSYSSCSWLSFLFYQ

XP_022953542.1 uncharacterized protein LOC111456053 isoform X1 [Cucurbita moschata]

3.7e-65

95.68

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Query:  MQIAATNFFLSANPKAIYHKQTADCFTPNLTSISVSFPSQMGYGSRKISVSKSNRYLPAACAALSEDVSVSSSQFEDFSVTKATNINENKELKICIEVSG
        MQIAATNFFLSANPKAIYHKQTADCFTPNLTSISVSFPSQMGYGSRKISVSKSNRYLPAACAALSEDVSVSSSQFEDFSVTKATNINENKELKICIEVSG
Subjt:  MQIAATNFFLSANPKAIYHKQTADCFTPNLTSISVSFPSQMGYGSRKISVSKSNRYLPAACAALSEDVSVSSSQFEDFSVTKATNINENKELKICIEVSG

Query:  AKTRAIFDNVFNEMVDKAQPIPGFRRAKGG---NIQRRV
        AKTRAIFDNVFNEMVDKAQPIPGFRRAKGG   NI R +
Subjt:  AKTRAIFDNVFNEMVDKAQPIPGFRRAKGG---NIQRRV

XP_022953543.1 uncharacterized protein LOC111456053 isoform X2 [Cucurbita moschata]

3.7e-65

95.68

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Query:  MQIAATNFFLSANPKAIYHKQTADCFTPNLTSISVSFPSQMGYGSRKISVSKSNRYLPAACAALSEDVSVSSSQFEDFSVTKATNINENKELKICIEVSG
        MQIAATNFFLSANPKAIYHKQTADCFTPNLTSISVSFPSQMGYGSRKISVSKSNRYLPAACAALSEDVSVSSSQFEDFSVTKATNINENKELKICIEVSG
Subjt:  MQIAATNFFLSANPKAIYHKQTADCFTPNLTSISVSFPSQMGYGSRKISVSKSNRYLPAACAALSEDVSVSSSQFEDFSVTKATNINENKELKICIEVSG

Query:  AKTRAIFDNVFNEMVDKAQPIPGFRRAKGG---NIQRRV
        AKTRAIFDNVFNEMVDKAQPIPGFRRAKGG   NI R +
Subjt:  AKTRAIFDNVFNEMVDKAQPIPGFRRAKGG---NIQRRV

XP_023549254.1 uncharacterized protein LOC111807668 isoform X1 [Cucurbita pepo subsp. pepo]

4.5e-63

94.24

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Query:  MQIAATNFFLSANPKAIYHKQTADCFTPNLTSISVSFPSQMGYGSRKISVSKSNRYLPAACAALSEDVSVSSSQFEDFSVTKATNINENKELKICIEVSG
        MQIAATNFFLSANPKAIYHKQTAD FTPNLTS SVSFPSQMGYGSRKISVSKSNRYLPAACAALSEDVSVSSSQFEDFSVTKATNINENKELKICIEVSG
Subjt:  MQIAATNFFLSANPKAIYHKQTADCFTPNLTSISVSFPSQMGYGSRKISVSKSNRYLPAACAALSEDVSVSSSQFEDFSVTKATNINENKELKICIEVSG

Query:  AKTRAIFDNVFNEMVDKAQPIPGFRRAKGG---NIQRRV
        AKTRAIFDNVFNEMVDKAQPIPGFRRAKGG   NI R +
Subjt:  AKTRAIFDNVFNEMVDKAQPIPGFRRAKGG---NIQRRV

TrEMBL top hits

e value

%identity

Alignment

A0A1S3CC05 trigger factor-like isoform X2

7.3e-51

78.52

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Query:  MQIAATNFFLSANPKAIYHKQTADCFTPNLTSISVSFPSQMGYGSRKISVSKSNRYLPAACAALSEDVSVSSSQFEDFSVTKATNINENKELKICIEVSG
        MQIAA NFFLSANPKA+YHKQT D FTPNLT  SVSFPSQ+ YGS KIS+SK+NRYLPAACA LSE+ SVSSSQFEDFSVT  TN  ENKELKI +EVSG
Subjt:  MQIAATNFFLSANPKAIYHKQTADCFTPNLTSISVSFPSQMGYGSRKISVSKSNRYLPAACAALSEDVSVSSSQFEDFSVTKATNINENKELKICIEVSG

Query:  AKTRAIFDNVFNEMVDKAQPIPGFRRAKGGNIQRR
         KTRAIF+ VF+ MV +AQPIPGFRR KGGNIQR+
Subjt:  AKTRAIFDNVFNEMVDKAQPIPGFRRAKGGNIQRR

A0A5A7TA41 Trigger factor-like isoform X1

5.6e-51

77.94

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Query:  MQIAATNFFLSANPKAIYHKQTADCFTPNLTSISVSFPSQMGYGSRKISVSKSNRYLPAACAALSEDVSVSSSQFEDFSVTKATNINENKELKICIEVSG
        MQIAA NFFLSANPKA+YHKQT D FTPNLT  SVSFPSQ+ YGS KIS+SK+NRYLPAACA LSE+ SVSSSQFEDFSVT  TN  ENKELKI +EVSG
Subjt:  MQIAATNFFLSANPKAIYHKQTADCFTPNLTSISVSFPSQMGYGSRKISVSKSNRYLPAACAALSEDVSVSSSQFEDFSVTKATNINENKELKICIEVSG

Query:  AKTRAIFDNVFNEMVDKAQPIPGFRRAKGGNIQRRV
         KTRAIF+ VF+ MV +AQPIPGFRR KGGNIQR +
Subjt:  AKTRAIFDNVFNEMVDKAQPIPGFRRAKGGNIQRRV

A0A6J1GNI4 uncharacterized protein LOC111456053 isoform X1

1.8e-65

95.68

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Query:  MQIAATNFFLSANPKAIYHKQTADCFTPNLTSISVSFPSQMGYGSRKISVSKSNRYLPAACAALSEDVSVSSSQFEDFSVTKATNINENKELKICIEVSG
        MQIAATNFFLSANPKAIYHKQTADCFTPNLTSISVSFPSQMGYGSRKISVSKSNRYLPAACAALSEDVSVSSSQFEDFSVTKATNINENKELKICIEVSG
Subjt:  MQIAATNFFLSANPKAIYHKQTADCFTPNLTSISVSFPSQMGYGSRKISVSKSNRYLPAACAALSEDVSVSSSQFEDFSVTKATNINENKELKICIEVSG

Query:  AKTRAIFDNVFNEMVDKAQPIPGFRRAKGG---NIQRRV
        AKTRAIFDNVFNEMVDKAQPIPGFRRAKGG   NI R +
Subjt:  AKTRAIFDNVFNEMVDKAQPIPGFRRAKGG---NIQRRV

A0A6J1GNL4 uncharacterized protein LOC111456053 isoform X2

1.8e-65

95.68

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Query:  MQIAATNFFLSANPKAIYHKQTADCFTPNLTSISVSFPSQMGYGSRKISVSKSNRYLPAACAALSEDVSVSSSQFEDFSVTKATNINENKELKICIEVSG
        MQIAATNFFLSANPKAIYHKQTADCFTPNLTSISVSFPSQMGYGSRKISVSKSNRYLPAACAALSEDVSVSSSQFEDFSVTKATNINENKELKICIEVSG
Subjt:  MQIAATNFFLSANPKAIYHKQTADCFTPNLTSISVSFPSQMGYGSRKISVSKSNRYLPAACAALSEDVSVSSSQFEDFSVTKATNINENKELKICIEVSG

Query:  AKTRAIFDNVFNEMVDKAQPIPGFRRAKGG---NIQRRV
        AKTRAIFDNVFNEMVDKAQPIPGFRRAKGG   NI R +
Subjt:  AKTRAIFDNVFNEMVDKAQPIPGFRRAKGG---NIQRRV

A0A6J1JZ32 uncharacterized protein LOC111488717

1.1e-62

92.81

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Query:  MQIAATNFFLSANPKAIYHKQTADCFTPNLTSISVSFPSQMGYGSRKISVSKSNRYLPAACAALSEDVSVSSSQFEDFSVTKATNINENKELKICIEVSG
        MQIAATNFFLSANPKA YHKQTADCFTPNLTS SVSFPSQMGYGSRKISVSKSNRYLPAACAALSEDV VSSSQFEDFSVTKATNINENKELKICIEVSG
Subjt:  MQIAATNFFLSANPKAIYHKQTADCFTPNLTSISVSFPSQMGYGSRKISVSKSNRYLPAACAALSEDVSVSSSQFEDFSVTKATNINENKELKICIEVSG

Query:  AKTRAIFDNVFNEMVDKAQPIPGFRRAKGG---NIQRRV
        AKTRAIFDNVFNEMVDKAQPIPGFRR KGG   NI R +
Subjt:  AKTRAIFDNVFNEMVDKAQPIPGFRRAKGG---NIQRRV

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT2G30695.1 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: protein folding, protein transport; LOCATED IN: chloroplast stroma, chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Trigger factor, ribosome-binding, bacterial (InterPro:IPR008881); Has 253 Blast hits to 253 proteins in 72 species: Archae - 0; Bacteria - 138; Metazoa - 0; Fungi - 0; Plants - 40; Viruses - 0; Other Eukaryotes - 75 (source: NCBI BLink).

6.6e-12

47.06

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Query:  RKISVSKSNRYLPAACAALSEDVSVSSSQFEDFSVTKATNINENKELKICIEVSGAKTRAIFDNVFNEMVDKAQPIPGFRRAKGG
        +K+    +NR   A CAA S DV  SS   E   +TK      N E+K+ ++VSG KT+ +F++VF +MV  AQPIPGFRR KGG
Subjt:  RKISVSKSNRYLPAACAALSEDVSVSSSQFEDFSVTKATNINENKELKICIEVSGAKTRAIFDNVFNEMVDKAQPIPGFRRAKGG

AT2G30695.2 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: protein folding, protein transport; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Trigger factor, ribosome-binding, bacterial (InterPro:IPR008881); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).

6.6e-12

47.06

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Query:  RKISVSKSNRYLPAACAALSEDVSVSSSQFEDFSVTKATNINENKELKICIEVSGAKTRAIFDNVFNEMVDKAQPIPGFRRAKGG
        +K+    +NR   A CAA S DV  SS   E   +TK      N E+K+ ++VSG KT+ +F++VF +MV  AQPIPGFRR KGG
Subjt:  RKISVSKSNRYLPAACAALSEDVSVSSSQFEDFSVTKATNINENKELKICIEVSGAKTRAIFDNVFNEMVDKAQPIPGFRRAKGG

Sequences

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CDS sequence

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ATGCAAATAGCCGCTACGAACTTCTTTCTTTCGGCAAACCCCAAGGCTATATATCATAAGCAGACAGCAGATTGCTTTACTCCAAATCTCACCAGCATAAGCGTGTCTTT
TCCCAGTCAAATGGGATATGGCAGCAGAAAAATTTCTGTGAGTAAAAGTAACAGATATCTTCCAGCTGCTTGTGCTGCGTTGTCAGAAGATGTGAGTGTTTCTTCTTCTC
AGTTTGAAGACTTCTCTGTCACTAAAGCTACTAATATCAATGAGAATAAAGAACTAAAGATTTGTATTGAGGTCTCTGGAGCTAAAACACGAGCAATTTTCGACAATGTG
TTCAATGAAATGGTTGATAAAGCGCAGCCTATTCCCGGTTTTAGAAGAGCGAAAGGAGGTAATATCCAGAGGCGTGTTTCTTATTCGAGTTGCTCATGGCTTTCATTTTT
GTTTTATCAATAA

mRNA sequence

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Protein sequence

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MQIAATNFFLSANPKAIYHKQTADCFTPNLTSISVSFPSQMGYGSRKISVSKSNRYLPAACAALSEDVSVSSSQFEDFSVTKATNINENKELKICIEVSGAKTRAIFDNV
FNEMVDKAQPIPGFRRAKGGNIQRRVSYSSCSWLSFLFYQ

CmoCh17G006010 (gene) of Cucurbita moschata (Rifu) v1 genome