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CmoCh17G006340 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh17G006340
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
DescriptionLate embryogenesis abundant protein
Genome locationCmo_Chr17:6632497..6633927
RNA-Seq ExpressionCmoCh17G006340
SyntenyCmoCh17G006340
Gene Ontology termsNA
InterPro domainsIPR004926 - Late embryogenesis abundant protein, LEA_3 subgroup


Homology Show/hide homology
GenBank top hitse value%identityAlignment
EOY27380.1 Senescence-associated gene 21, putative [Theobroma cacao]1.3e-1247.37Show/hide
Query:  MAKLTGNGVYFIRRLSSLVASEQRKERATAPMTVKNVIATVETSGSDDIKA---VEQKNIFWMKDPKSGNWIPENHFGEIDVVELREKLLSKTKK
        MA+L+      + R S  VA+E  K +A A +          T  + D++A    EQK  FWM+DPK+GNWIPENHFG+IDV ELREK LSK +K
Subjt:  MAKLTGNGVYFIRRLSSLVASEQRKERATAPMTVKNVIATVETSGSDDIKA---VEQKNIFWMKDPKSGNWIPENHFGEIDVVELREKLLSKTKK

KAA0059359.1 putative Senescence-associated protein 21 [Cucumis melo var. makuwa]2.8e-1868.83Show/hide
Query:  LSSLVASEQRKERATAPMTVKNVIATVETSGSDDIKAVEQKNIFWMKDPKSGNWIPENHFGEIDVVELREKLLSKTK
        +SS +ASEQ K + TA M V+ V A VETS  D+ + VEQK  FWMKDPKSGNWIPENHF EIDVVELREKLL+K K
Subjt:  LSSLVASEQRKERATAPMTVKNVIATVETSGSDDIKAVEQKNIFWMKDPKSGNWIPENHFGEIDVVELREKLLSKTK

KAE8646489.1 hypothetical protein Csa_015817 [Cucumis sativus]1.5e-1969.62Show/hide
Query:  LSSLVASEQRKERATAPMTVKNVIATVETSGSDDIKAVEQKNIFWMKDPKSGNWIPENHFGEIDVVELREKLLSKTKKL
        +SS VASEQ K + TA M V+ V A VET G D+ + VEQK  FWMKDPKSGNWIPENHF E+DVVELREKLL+K KKL
Subjt:  LSSLVASEQRKERATAPMTVKNVIATVETSGSDDIKAVEQKNIFWMKDPKSGNWIPENHFGEIDVVELREKLLSKTKKL

KAG6575415.1 hypothetical protein SDJN03_26054, partial [Cucurbita argyrosperma subsp. sororia]1.2e-4297.87Show/hide
Query:  MAKLTGNGVYFIRRLSSLVASEQRKERATAPMTVKNVIATVETSGSDDIKAVEQKNIFWMKDPKSGNWIPENHFGEIDVVELREKLLSKTKKLF
        MAKLTGNGVYFIRRLSSLVASEQ K RATAPMTVKNVIATVETSGSDDIKAVEQKNIFWMKDPKSGNWIPENHFGEIDVVELREKLLSKTKKLF
Subjt:  MAKLTGNGVYFIRRLSSLVASEQRKERATAPMTVKNVIATVETSGSDDIKAVEQKNIFWMKDPKSGNWIPENHFGEIDVVELREKLLSKTKKLF

XP_039070777.1 uncharacterized protein LOC120217767 isoform X1 [Hibiscus syriacus]7.8e-1347.83Show/hide
Query:  MAKLTGNGVYFIRRLSSLVASEQRKERATAPMTVKNVIATVETSGSDDIKAVEQKNIFWMKDPKSGNWIPENHFGEIDVVELREKLLSKTKK
        MA+L+      + R S  V +E  K++A A +  K V    E   +DD     +K +FWM+DPK+GNWIPENHFG+IDV ELREKLL K  K
Subjt:  MAKLTGNGVYFIRRLSSLVASEQRKERATAPMTVKNVIATVETSGSDDIKAVEQKNIFWMKDPKSGNWIPENHFGEIDVVELREKLLSKTKK

TrEMBL top hitse value%identityAlignment
A0A061GBY1 Senescence-associated gene 21, putative6.4e-1347.37Show/hide
Query:  MAKLTGNGVYFIRRLSSLVASEQRKERATAPMTVKNVIATVETSGSDDIKA---VEQKNIFWMKDPKSGNWIPENHFGEIDVVELREKLLSKTKK
        MA+L+      + R S  VA+E  K +A A +          T  + D++A    EQK  FWM+DPK+GNWIPENHFG+IDV ELREK LSK +K
Subjt:  MAKLTGNGVYFIRRLSSLVASEQRKERATAPMTVKNVIATVETSGSDDIKA---VEQKNIFWMKDPKSGNWIPENHFGEIDVVELREKLLSKTKK

A0A0A0K7L4 Uncharacterized protein6.0e-2770.97Show/hide
Query:  MAKLTGNGVYFIRRLSSLVASEQRKERATAPMTVKNVIATVETSGSDDIKAVEQKNIFWMKDPKSGNWIPENHFGEIDVVELREKLLSKTKKL
        MAK+TGN +YFIRR+SS VASEQ K + TA M V+ V A VET G D+ + VEQK  FWMKDPKSGNWIPENHF E+DVVELREKLL+K KKL
Subjt:  MAKLTGNGVYFIRRLSSLVASEQRKERATAPMTVKNVIATVETSGSDDIKAVEQKNIFWMKDPKSGNWIPENHFGEIDVVELREKLLSKTKKL

A0A2N9EY27 Uncharacterized protein1.1e-1248.94Show/hide
Query:  MAKLTGNGVYFIRRLSSLVASEQRKERATAPMTVKNVIATVETSG-SDDIKAVEQKNIFWMKDPKSGNWIPENHFGEIDVVELREKLLSKTKKL
        MAK+  N +  +RR  S      R         VK V+  +     S    A EQK  FWM+DPKSGNWIPE+HFGEIDV ELREK LSK +KL
Subjt:  MAKLTGNGVYFIRRLSSLVASEQRKERATAPMTVKNVIATVETSG-SDDIKAVEQKNIFWMKDPKSGNWIPENHFGEIDVVELREKLLSKTKKL

A0A5D3BWU2 Putative Senescence-associated protein 211.3e-1868.83Show/hide
Query:  LSSLVASEQRKERATAPMTVKNVIATVETSGSDDIKAVEQKNIFWMKDPKSGNWIPENHFGEIDVVELREKLLSKTK
        +SS +ASEQ K + TA M V+ V A VETS  D+ + VEQK  FWMKDPKSGNWIPENHF EIDVVELREKLL+K K
Subjt:  LSSLVASEQRKERATAPMTVKNVIATVETSGSDDIKAVEQKNIFWMKDPKSGNWIPENHFGEIDVVELREKLLSKTK

A0A6A3BDL0 Eukaryotic translation initiation factor 2B family protein3.8e-1347.83Show/hide
Query:  MAKLTGNGVYFIRRLSSLVASEQRKERATAPMTVKNVIATVETSGSDDIKAVEQKNIFWMKDPKSGNWIPENHFGEIDVVELREKLLSKTKK
        MA+L+      + R S  V +E  K++A A +  K V    E   +DD     +K +FWM+DPK+GNWIPENHFG+IDV ELREKLL K  K
Subjt:  MAKLTGNGVYFIRRLSSLVASEQRKERATAPMTVKNVIATVETSGSDDIKAVEQKNIFWMKDPKSGNWIPENHFGEIDVVELREKLLSKTKK

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCTAAGCTAACTGGAAATGGTGTTTACTTTATAAGGCGACTGAGCTCTTTGGTTGCATCCGAGCAACGTAAAGAACGAGCAACTGCACCAATGACGGTGAAGAACGT
GATAGCAACTGTGGAAACGAGCGGTTCGGATGATATCAAGGCAGTTGAACAGAAGAACATATTTTGGATGAAAGATCCAAAGAGTGGGAACTGGATTCCTGAGAACCACT
TCGGAGAGATTGATGTGGTCGAATTGAGGGAGAAACTGCTGTCTAAAACTAAGAAGCTGTTCTAA
mRNA sequenceShow/hide mRNA sequence
ATGGCTAAGCTAACTGGAAATGGTGTTTACTTTATAAGGCGACTGAGCTCTTTGGTTGCATCCGAGCAACGTAAAGAACGAGCAACTGCACCAATGACGGTGAAGAACGT
GATAGCAACTGTGGAAACGAGCGGTTCGGATGATATCAAGGCAGTTGAACAGAAGAACATATTTTGGATGAAAGATCCAAAGAGTGGGAACTGGATTCCTGAGAACCACT
TCGGAGAGATTGATGTGGTCGAATTGAGGGAGAAACTGCTGTCTAAAACTAAGAAGCTGTTCTAAAACTGCTACTCAAAAAGCTTCATAAATCTCCACCTTTATCTATCT
TATCCATGCTAAAACTATTGTACCACTGCTTTTTCTCTCTATCTTTCTATCTAATCTGTCACTTTTGTTAGCTTAATTGACAGAACGGAATCCGAATCTAATCAGGTTTG
TCAATGAAAGCCGATCG
Protein sequenceShow/hide protein sequence
MAKLTGNGVYFIRRLSSLVASEQRKERATAPMTVKNVIATVETSGSDDIKAVEQKNIFWMKDPKSGNWIPENHFGEIDVVELREKLLSKTKKLF