; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

CmoCh17G006730 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh17G006730
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
DescriptionRING-type E3 ubiquitin transferase
Genome locationCmo_Chr17:6899493..6899981
RNA-Seq ExpressionCmoCh17G006730
SyntenyCmoCh17G006730
Gene Ontology termsGO:0016020 - membrane (cellular component)
InterPro domainsIPR001841 - Zinc finger, RING-type
IPR013083 - Zinc finger, RING/FYVE/PHD-type
IPR044675 - E3 ubiquitin-protein ligase RING1-like


Homology Show/hide homology
GenBank top hitse value%identityAlignment
EEF41012.1 conserved hypothetical protein [Ricinus communis]5.6e-1937.86Show/hide
Query:  ICSGIAIICSLIISLTFFRLTILGWFNCCCHSPGTTESVENIKNEVSHI------MQIPTVTYKKENENEETNTESECVLCLSPFEDGECIRQLPSCNHV
        I  G+ +  ++ I+   + + +LGW     H   + + + N  +  S +          T  YKK  EN E  +E+EC++CLS FED E +RQLP C H 
Subjt:  ICSGIAIICSLIISLTFFRLTILGWFNCCCHSPGTTESVENIKNEVSHI------MQIPTVTYKKENENEETNTESECVLCLSPFEDGECIRQLPSCNHV

Query:  FHASCIDVWLSSHSECPLCRTPVHHVACRTAEAVISQVVD
        FHASCID+W+ SHS+CPLCRTP+H +   ++   I    D
Subjt:  FHASCIDVWLSSHSECPLCRTPVHHVACRTAEAVISQVVD

GAU28792.1 hypothetical protein TSUD_357780 [Trifolium subterraneum]1.3e-1840.48Show/hide
Query:  LFICSGIAIICSLIISLTFFRLTILGWFNCCCHSPGTTESVENIKNEVSHIMQIP----TVTYKKENENEETNTESECVLCLSPFEDGECIRQLPSCNHV
        +++  GI II S++I+  FFRLT+ GW N   H P    ++ +   + S  M +     T  YK+ +  ++   ++ECV+CL+ F++ E +R+L SC HV
Subjt:  LFICSGIAIICSLIISLTFFRLTILGWFNCCCHSPGTTESVENIKNEVSHIMQIP----TVTYKKENENEETNTESECVLCLSPFEDGECIRQLPSCNHV

Query:  FHASCIDVWLSSHSECPLCRTPVHHV
        FH SCID WL SHS CPLCR+ +  V
Subjt:  FHASCIDVWLSSHSECPLCRTPVHHV

KAA0059407.1 E3 ubiquitin-protein ligase RING1-like [Cucumis melo var. makuwa]1.4e-4965.27Show/hide
Query:  MSVLFICSGIAIICSLIISLTFFRLTILGWFNCCCHSPGTTESVENIKNEVSHIMQIPTVTYKKENENEETNTESECVLCLSPFEDGECIRQLPSCNHVF
        MSVLFICSG+AI+CSL I+L FF L +LGWFNCCC SP  T+ V+NIK E S++++I T+ YKKEN++EETN  SEC LCLSP EDGECIR+L +CNHVF
Subjt:  MSVLFICSGIAIICSLIISLTFFRLTILGWFNCCCHSPGTTESVENIKNEVSHIMQIPTVTYKKENENEETNTESECVLCLSPFEDGECIRQLPSCNHVF

Query:  HASCIDVWLSSHSECPLCRTPVHHVACRTAE----AVISQVVDI-NSLQIELSPHVIRSKAWPENMV
        HASCIDVWL SHS CPLCRT + HVAC   E     V S VV I NSLQI LS H  R  +  ENMV
Subjt:  HASCIDVWLSSHSECPLCRTPVHHVACRTAE----AVISQVVDI-NSLQIELSPHVIRSKAWPENMV

KAE8646506.1 hypothetical protein Csa_015876 [Cucumis sativus]6.6e-5268.29Show/hide
Query:  MSVLFICSGIAIICSLIISLTFFRLT-ILGWFNCCCHSPGTTESVENIKNEVSHIMQIPTVTYKKENENEETNTESECVLCLSPFEDGECIRQLPSCNHV
        MSVLFICSGIAIICSL I+L FF LT ILGWFNCCC SP  T +V+NIK E S++M+I T+ YKKEN++EETN  SEC LCLSP+EDGECIR+L +CNHV
Subjt:  MSVLFICSGIAIICSLIISLTFFRLT-ILGWFNCCCHSPGTTESVENIKNEVSHIMQIPTVTYKKENENEETNTESECVLCLSPFEDGECIRQLPSCNHV

Query:  FHASCIDVWLSSHSECPLCRTPVHHVACRTAEAVISQVVDI-NSLQIELSPHVIRSKAWPENMV
        FHASCID+WL SHS CPLCRTP+  VAC   E     VV I NSLQIE S H  + +A PENMV
Subjt:  FHASCIDVWLSSHSECPLCRTPVHHVACRTAEAVISQVVDI-NSLQIELSPHVIRSKAWPENMV

KAG7013994.1 E3 ubiquitin-protein ligase ATL6, partial [Cucurbita argyrosperma subsp. argyrosperma]7.0e-8697.53Show/hide
Query:  MSVLFICSGIAIICSLIISLTFFRLTILGWFNCCCHSPGTTESVENIKNEVSHIMQIPTVTYKKENENEETNTESECVLCLSPFEDGECIRQLPSCNHVF
        MSV FICSGIAIICSLIISLTFF LTILGWFNCCCHSP TTESVENIKNEVSHIMQIPTVTYKKENENEETNTESECVLCLSPFEDGECIRQLPSCNHVF
Subjt:  MSVLFICSGIAIICSLIISLTFFRLTILGWFNCCCHSPGTTESVENIKNEVSHIMQIPTVTYKKENENEETNTESECVLCLSPFEDGECIRQLPSCNHVF

Query:  HASCIDVWLSSHSECPLCRTPVHHVACRTAEAVISQVVDINSLQIELSPHVIRSKAWPENMV
        HASCIDVWLSSHSECPLCRTPVHHVACRTAEAVI QVVDINSLQIELSPHVIRSKAWPENMV
Subjt:  HASCIDVWLSSHSECPLCRTPVHHVACRTAEAVISQVVDINSLQIELSPHVIRSKAWPENMV

TrEMBL top hitse value%identityAlignment
A0A0A0KAX6 RING-type E3 ubiquitin transferase3.2e-5268.29Show/hide
Query:  MSVLFICSGIAIICSLIISLTFFRLT-ILGWFNCCCHSPGTTESVENIKNEVSHIMQIPTVTYKKENENEETNTESECVLCLSPFEDGECIRQLPSCNHV
        MSVLFICSGIAIICSL I+L FF LT ILGWFNCCC SP  T +V+NIK E S++M+I T+ YKKEN++EETN  SEC LCLSP+EDGECIR+L +CNHV
Subjt:  MSVLFICSGIAIICSLIISLTFFRLT-ILGWFNCCCHSPGTTESVENIKNEVSHIMQIPTVTYKKENENEETNTESECVLCLSPFEDGECIRQLPSCNHV

Query:  FHASCIDVWLSSHSECPLCRTPVHHVACRTAEAVISQVVDI-NSLQIELSPHVIRSKAWPENMV
        FHASCID+WL SHS CPLCRTP+  VAC   E     VV I NSLQIE S H  + +A PENMV
Subjt:  FHASCIDVWLSSHSECPLCRTPVHHVACRTAEAVISQVVDI-NSLQIELSPHVIRSKAWPENMV

A0A2N9J1M7 RING-type E3 ubiquitin transferase2.5e-2045.08Show/hide
Query:  GIAIICSLIISLTFFRLT--ILGWFNCCCHSPGTTESVENIKNEVSHI--MQIPTVTYKKENENEETNTESECVLCLSPFEDGECIRQLPSCNHVFHASC
        GI +I S+II+L F+ L   +L  +    H P T   V+    + S +  + + T  YKK  EN E  +E+ECV+CLS FED EC+ +LP C H FH  C
Subjt:  GIAIICSLIISLTFFRLT--ILGWFNCCCHSPGTTESVENIKNEVSHI--MQIPTVTYKKENENEETNTESECVLCLSPFEDGECIRQLPSCNHVFHASC

Query:  IDVWLSSHSECPLCRTPVHHVA
        ID+WL SHS+CPLCRTP+  ++
Subjt:  IDVWLSSHSECPLCRTPVHHVA

A0A2Z6MV30 RING-type E3 ubiquitin transferase6.1e-1940.48Show/hide
Query:  LFICSGIAIICSLIISLTFFRLTILGWFNCCCHSPGTTESVENIKNEVSHIMQIP----TVTYKKENENEETNTESECVLCLSPFEDGECIRQLPSCNHV
        +++  GI II S++I+  FFRLT+ GW N   H P    ++ +   + S  M +     T  YK+ +  ++   ++ECV+CL+ F++ E +R+L SC HV
Subjt:  LFICSGIAIICSLIISLTFFRLTILGWFNCCCHSPGTTESVENIKNEVSHIMQIP----TVTYKKENENEETNTESECVLCLSPFEDGECIRQLPSCNHV

Query:  FHASCIDVWLSSHSECPLCRTPVHHV
        FH SCID WL SHS CPLCR+ +  V
Subjt:  FHASCIDVWLSSHSECPLCRTPVHHV

A0A5D3BXP3 RING-type E3 ubiquitin transferase6.6e-5065.27Show/hide
Query:  MSVLFICSGIAIICSLIISLTFFRLTILGWFNCCCHSPGTTESVENIKNEVSHIMQIPTVTYKKENENEETNTESECVLCLSPFEDGECIRQLPSCNHVF
        MSVLFICSG+AI+CSL I+L FF L +LGWFNCCC SP  T+ V+NIK E S++++I T+ YKKEN++EETN  SEC LCLSP EDGECIR+L +CNHVF
Subjt:  MSVLFICSGIAIICSLIISLTFFRLTILGWFNCCCHSPGTTESVENIKNEVSHIMQIPTVTYKKENENEETNTESECVLCLSPFEDGECIRQLPSCNHVF

Query:  HASCIDVWLSSHSECPLCRTPVHHVACRTAE----AVISQVVDI-NSLQIELSPHVIRSKAWPENMV
        HASCIDVWL SHS CPLCRT + HVAC   E     V S VV I NSLQI LS H  R  +  ENMV
Subjt:  HASCIDVWLSSHSECPLCRTPVHHVACRTAE----AVISQVVDI-NSLQIELSPHVIRSKAWPENMV

B9S5S5 RING-type E3 ubiquitin transferase2.7e-1937.86Show/hide
Query:  ICSGIAIICSLIISLTFFRLTILGWFNCCCHSPGTTESVENIKNEVSHI------MQIPTVTYKKENENEETNTESECVLCLSPFEDGECIRQLPSCNHV
        I  G+ +  ++ I+   + + +LGW     H   + + + N  +  S +          T  YKK  EN E  +E+EC++CLS FED E +RQLP C H 
Subjt:  ICSGIAIICSLIISLTFFRLTILGWFNCCCHSPGTTESVENIKNEVSHI------MQIPTVTYKKENENEETNTESECVLCLSPFEDGECIRQLPSCNHV

Query:  FHASCIDVWLSSHSECPLCRTPVHHVACRTAEAVISQVVD
        FHASCID+W+ SHS+CPLCRTP+H +   ++   I    D
Subjt:  FHASCIDVWLSSHSECPLCRTPVHHVACRTAEAVISQVVD

SwissProt top hitse value%identityAlignment
P93823 RING-H2 finger protein ATL13.7e-1337.86Show/hide
Query:  SHIMQIPTVTYKKEN----ENEETNTESECVLCLSPFEDGECIRQLPSCNHVFHASCIDVWLSSHSECPLCRTPVHHVACRTAEAVISQVVDINSLQIEL
        S I  IP   +KK +    E +++    EC +CL+ F++ E +R +P+C HVFH  CID+WL  ++ CPLCRT V   A  T +     ++   S   E 
Subjt:  SHIMQIPTVTYKKEN----ENEETNTESECVLCLSPFEDGECIRQLPSCNHVFHASCIDVWLSSHSECPLCRTPVHHVACRTAEAVISQVVDINSLQIEL

Query:  SPH
        SPH
Subjt:  SPH

Q9LSW9 RING-H2 finger protein ATL161.3e-1343.33Show/hide
Query:  SHIMQIPTVTYKK-----------ENENEETNTESECVLCLSPFEDGECIRQLPSCNHVFHASCIDVWLSSHSECPLCRTPVHHVACRTA
        S I  IP   +KK           E E EE     EC +CLS F+D E +R +P+C+H+FH  CIDVWL +++ CPLCRT    V+C T+
Subjt:  SHIMQIPTVTYKK-----------ENENEETNTESECVLCLSPFEDGECIRQLPSCNHVFHASCIDVWLSSHSECPLCRTPVHHVACRTA

Q9LUZ9 RING-H2 finger protein ATL632.7e-1639.52Show/hide
Query:  LGWFNCCCHSPGTTESVENIKNEVSHIMQIPTVTYKKENENEETNTESECVLCLSPFEDGECIRQLPSCNHVFHASCIDVWLSSHSECPLCRTPVHHVAC
        LG F+    SP  T + ++   + S I  IP   Y +ENE EE + E ECV+CL  +E G+  R+L +C H FH  CID+WLSSHS CPLCR+PV     
Subjt:  LGWFNCCCHSPGTTESVENIKNEVSHIMQIPTVTYKKENENEETNTESECVLCLSPFEDGECIRQLPSCNHVFHASCIDVWLSSHSECPLCRTPVHHVAC

Query:  --RTAEAVISQVVDINSLQIELSP
             +  ++ V +   +++++SP
Subjt:  --RTAEAVISQVVDINSLQIELSP

Q9M0R5 Putative RING-H2 finger protein ATL369.6e-1438.26Show/hide
Query:  IISLTFFRLTI-LGWFNCCCHSPGTTESVENIKNEVSH-----------IMQIPTVTYKKENENEETNTESECVLCLSPFEDGECIRQLPSCNHVFHASC
        II++    + I LG  +CC H     E +     +V H           I   PT  Y +    +      EC +CLS FED E +R +P C+H FHA+C
Subjt:  IISLTFFRLTI-LGWFNCCCHSPGTTESVENIKNEVSH-----------IMQIPTVTYKKENENEETNTESECVLCLSPFEDGECIRQLPSCNHVFHASC

Query:  IDVWLSSHSECPLCR
        IDVWLSS S CP+CR
Subjt:  IDVWLSSHSECPLCR

Q9SRQ8 RING-H2 finger protein ATL512.1e-1342.7Show/hide
Query:  IPTVTYKKENENEETNTESECVLCLSPFEDGECIRQLPSCNHVFHASCIDVWLSSHSECPLCRTPVHHVACRTAEAVISQVVDINSLQI
        I ++T  K  + +     S+C +CLS F++ E +R LP CNH FH  CID WL SHS CPLCR  +      T+ AV  ++VD+ + QI
Subjt:  IPTVTYKKENENEETNTESECVLCLSPFEDGECIRQLPSCNHVFHASCIDVWLSSHSECPLCRTPVHHVACRTAEAVISQVVDINSLQI

Arabidopsis top hitse value%identityAlignment
AT1G04360.1 RING/U-box superfamily protein2.6e-1437.86Show/hide
Query:  SHIMQIPTVTYKKEN----ENEETNTESECVLCLSPFEDGECIRQLPSCNHVFHASCIDVWLSSHSECPLCRTPVHHVACRTAEAVISQVVDINSLQIEL
        S I  IP   +KK +    E +++    EC +CL+ F++ E +R +P+C HVFH  CID+WL  ++ CPLCRT V   A  T +     ++   S   E 
Subjt:  SHIMQIPTVTYKKEN----ENEETNTESECVLCLSPFEDGECIRQLPSCNHVFHASCIDVWLSSHSECPLCRTPVHHVACRTAEAVISQVVDINSLQIEL

Query:  SPH
        SPH
Subjt:  SPH

AT3G03550.1 RING/U-box superfamily protein1.5e-1442.7Show/hide
Query:  IPTVTYKKENENEETNTESECVLCLSPFEDGECIRQLPSCNHVFHASCIDVWLSSHSECPLCRTPVHHVACRTAEAVISQVVDINSLQI
        I ++T  K  + +     S+C +CLS F++ E +R LP CNH FH  CID WL SHS CPLCR  +      T+ AV  ++VD+ + QI
Subjt:  IPTVTYKKENENEETNTESECVLCLSPFEDGECIRQLPSCNHVFHASCIDVWLSSHSECPLCRTPVHHVACRTAEAVISQVVDINSLQI

AT4G09120.1 RING/U-box superfamily protein6.8e-1538.26Show/hide
Query:  IISLTFFRLTI-LGWFNCCCHSPGTTESVENIKNEVSH-----------IMQIPTVTYKKENENEETNTESECVLCLSPFEDGECIRQLPSCNHVFHASC
        II++    + I LG  +CC H     E +     +V H           I   PT  Y +    +      EC +CLS FED E +R +P C+H FHA+C
Subjt:  IISLTFFRLTI-LGWFNCCCHSPGTTESVENIKNEVSH-----------IMQIPTVTYKKENENEETNTESECVLCLSPFEDGECIRQLPSCNHVFHASC

Query:  IDVWLSSHSECPLCR
        IDVWLSS S CP+CR
Subjt:  IDVWLSSHSECPLCR

AT5G43420.1 RING/U-box superfamily protein8.9e-1543.33Show/hide
Query:  SHIMQIPTVTYKK-----------ENENEETNTESECVLCLSPFEDGECIRQLPSCNHVFHASCIDVWLSSHSECPLCRTPVHHVACRTA
        S I  IP   +KK           E E EE     EC +CLS F+D E +R +P+C+H+FH  CIDVWL +++ CPLCRT    V+C T+
Subjt:  SHIMQIPTVTYKK-----------ENENEETNTESECVLCLSPFEDGECIRQLPSCNHVFHASCIDVWLSSHSECPLCRTPVHHVACRTA

AT5G58580.1 TOXICOS EN LEVADURA 631.9e-1739.52Show/hide
Query:  LGWFNCCCHSPGTTESVENIKNEVSHIMQIPTVTYKKENENEETNTESECVLCLSPFEDGECIRQLPSCNHVFHASCIDVWLSSHSECPLCRTPVHHVAC
        LG F+    SP  T + ++   + S I  IP   Y +ENE EE + E ECV+CL  +E G+  R+L +C H FH  CID+WLSSHS CPLCR+PV     
Subjt:  LGWFNCCCHSPGTTESVENIKNEVSHIMQIPTVTYKKENENEETNTESECVLCLSPFEDGECIRQLPSCNHVFHASCIDVWLSSHSECPLCRTPVHHVAC

Query:  --RTAEAVISQVVDINSLQIELSP
             +  ++ V +   +++++SP
Subjt:  --RTAEAVISQVVDINSLQIELSP


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCCGTCCTCTTCATTTGCTCCGGCATTGCCATTATTTGCTCACTGATTATATCCCTCACATTCTTCCGTCTCACAATACTAGGATGGTTCAATTGCTGCTGCCATTC
ACCCGGGACGACCGAGTCGGTTGAGAATATTAAGAATGAAGTATCACATATCATGCAGATCCCAACTGTCACGTACAAGAAAGAAAATGAGAATGAAGAAACTAATACTG
AAAGTGAGTGTGTTTTGTGCTTGTCACCTTTTGAAGATGGGGAATGCATACGGCAGCTTCCCAGCTGCAACCATGTCTTTCATGCTTCGTGCATCGACGTATGGCTCTCT
TCACATTCAGAGTGCCCACTCTGTCGGACTCCAGTCCACCATGTAGCTTGTCGGACTGCAGAGGCGGTGATTTCTCAGGTAGTAGACATTAACAGTCTCCAGATTGAGCT
TTCTCCTCATGTAATTAGGAGCAAGGCGTGGCCAGAAAACATGGTTTAA
mRNA sequenceShow/hide mRNA sequence
ATGTCCGTCCTCTTCATTTGCTCCGGCATTGCCATTATTTGCTCACTGATTATATCCCTCACATTCTTCCGTCTCACAATACTAGGATGGTTCAATTGCTGCTGCCATTC
ACCCGGGACGACCGAGTCGGTTGAGAATATTAAGAATGAAGTATCACATATCATGCAGATCCCAACTGTCACGTACAAGAAAGAAAATGAGAATGAAGAAACTAATACTG
AAAGTGAGTGTGTTTTGTGCTTGTCACCTTTTGAAGATGGGGAATGCATACGGCAGCTTCCCAGCTGCAACCATGTCTTTCATGCTTCGTGCATCGACGTATGGCTCTCT
TCACATTCAGAGTGCCCACTCTGTCGGACTCCAGTCCACCATGTAGCTTGTCGGACTGCAGAGGCGGTGATTTCTCAGGTAGTAGACATTAACAGTCTCCAGATTGAGCT
TTCTCCTCATGTAATTAGGAGCAAGGCGTGGCCAGAAAACATGGTTTAA
Protein sequenceShow/hide protein sequence
MSVLFICSGIAIICSLIISLTFFRLTILGWFNCCCHSPGTTESVENIKNEVSHIMQIPTVTYKKENENEETNTESECVLCLSPFEDGECIRQLPSCNHVFHASCIDVWLS
SHSECPLCRTPVHHVACRTAEAVISQVVDINSLQIELSPHVIRSKAWPENMV