CuGenDBv2

Gene ID	CmoCh17G006830
Organism	Cucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
Description	DNA-directed RNA polymerase I subunit rpa49-like
Genome location	Cmo_Chr17:7001510..7005916
RNA-Seq Expression	CmoCh17G006830
Synteny	CmoCh17G006830
Gene Ontology terms	GO:0001188 - RNA polymerase I preinitiation complex assembly (biological process) GO:0006362 - transcription elongation from RNA polymerase I promoter (biological process) GO:0042790 - nucleolar large rRNA transcription by RNA polymerase I (biological process) GO:0005736 - RNA polymerase I complex (cellular component) GO:0003677 - DNA binding (molecular function) GO:0003899 - DNA-directed 5'-3' RNA polymerase activity (molecular function)
InterPro domains	IPR009668 - RNA polymerase I associated factor, A49-like

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAG7014005.1 DNA-directed RNA polymerase I subunit rpa49, partial [Cucurbita argyrosperma subsp. argyrosperma]

6.4e-243

99.77

Show/hide

Query:  MAEDTKSFELEDNHYSEPDSNLQSPAKKKKKSEKKKKRVPSVNAKIQVLSNHPQKTPPLVCYFPSGFDPHKDVNEEAVEEQDSVRARVYRHKNKPNRMQL
        MAEDTKS ELEDNHYSEPDSNLQSPAKKKKKSEKKKKRVPSVNAKIQVLSNHPQKTPPLVCYFPSGFDPHKDVNEEAVEEQDSVRARVYRHKNKPNRMQL
Subjt:  MAEDTKSFELEDNHYSEPDSNLQSPAKKKKKSEKKKKRVPSVNAKIQVLSNHPQKTPPLVCYFPSGFDPHKDVNEEAVEEQDSVRARVYRHKNKPNRMQL

Query:  VVSPTGSNVDFVGTNYLGEATAGKQHCSYGLGVLDKATQSLKIVPIASNMIFRLDPRIRGSDVSEMESPSVENEELSVQEKAEKMRELTNLYGTKKSINQ
        VVSPTGSNVDFVGTNYLGEATAGKQHCSYGLGVLDKATQSLKIVPIASNMIFRLDPRIRGSDVSEMESPSVENEELSVQEKAEKMRELTNLYGTKKSINQ
Subjt:  VVSPTGSNVDFVGTNYLGEATAGKQHCSYGLGVLDKATQSLKIVPIASNMIFRLDPRIRGSDVSEMESPSVENEELSVQEKAEKMRELTNLYGTKKSINQ

Query:  AKKLRSLKQEDDPDTKKDLDGKMKNVVVNKEALESTGAQIARNIPTYNVSATTPREAYPLDKIILKGEWSYLEDLYSLLQEEAEISAKYPSFVRNRIYKL
        AKKLRSLKQEDDPDTKKDLDGKMKNVVVNKEALESTGAQIARNIPTYNVSATTPREAYPLDKIILKGEWSYLEDLYSLLQEEAEISAKYPSFVRNRIYKL
Subjt:  AKKLRSLKQEDDPDTKKDLDGKMKNVVVNKEALESTGAQIARNIPTYNVSATTPREAYPLDKIILKGEWSYLEDLYSLLQEEAEISAKYPSFVRNRIYKL

Query:  QDVQDEEEKKQLCSIFSYITHLIKYKDQHSMGDVASAKSHKFPSMIRQKFSSMFPTSEARRLSTETINLLISHVLVLTLFADEFSSDPSDIAKDLRTSPY
        QDVQDEEEKKQLCSIFSYITHLIKYKDQHSMGDVASAKSHKFPSMIRQKFSSMFPTSEARRLSTETINLLISHVLVLTLFADEFSSDPSDIAKDLRTSPY
Subjt:  QDVQDEEEKKQLCSIFSYITHLIKYKDQHSMGDVASAKSHKFPSMIRQKFSSMFPTSEARRLSTETINLLISHVLVLTLFADEFSSDPSDIAKDLRTSPY

Query:  DLRLHFDNLGCKFIRKNNLSLVTLPTPLEFPELRQKRRR
        DLRLHFDNLGCKFIRKNNLSLVTLPTPLEFPELRQKRRR
Subjt:  DLRLHFDNLGCKFIRKNNLSLVTLPTPLEFPELRQKRRR

XP_022953835.1 DNA-directed RNA polymerase I subunit rpa49-like [Cucurbita moschata]

1.3e-243

100

Show/hide

Query:  MAEDTKSFELEDNHYSEPDSNLQSPAKKKKKSEKKKKRVPSVNAKIQVLSNHPQKTPPLVCYFPSGFDPHKDVNEEAVEEQDSVRARVYRHKNKPNRMQL
        MAEDTKSFELEDNHYSEPDSNLQSPAKKKKKSEKKKKRVPSVNAKIQVLSNHPQKTPPLVCYFPSGFDPHKDVNEEAVEEQDSVRARVYRHKNKPNRMQL
Subjt:  MAEDTKSFELEDNHYSEPDSNLQSPAKKKKKSEKKKKRVPSVNAKIQVLSNHPQKTPPLVCYFPSGFDPHKDVNEEAVEEQDSVRARVYRHKNKPNRMQL

Query:  VVSPTGSNVDFVGTNYLGEATAGKQHCSYGLGVLDKATQSLKIVPIASNMIFRLDPRIRGSDVSEMESPSVENEELSVQEKAEKMRELTNLYGTKKSINQ
        VVSPTGSNVDFVGTNYLGEATAGKQHCSYGLGVLDKATQSLKIVPIASNMIFRLDPRIRGSDVSEMESPSVENEELSVQEKAEKMRELTNLYGTKKSINQ
Subjt:  VVSPTGSNVDFVGTNYLGEATAGKQHCSYGLGVLDKATQSLKIVPIASNMIFRLDPRIRGSDVSEMESPSVENEELSVQEKAEKMRELTNLYGTKKSINQ

Query:  AKKLRSLKQEDDPDTKKDLDGKMKNVVVNKEALESTGAQIARNIPTYNVSATTPREAYPLDKIILKGEWSYLEDLYSLLQEEAEISAKYPSFVRNRIYKL
        AKKLRSLKQEDDPDTKKDLDGKMKNVVVNKEALESTGAQIARNIPTYNVSATTPREAYPLDKIILKGEWSYLEDLYSLLQEEAEISAKYPSFVRNRIYKL
Subjt:  AKKLRSLKQEDDPDTKKDLDGKMKNVVVNKEALESTGAQIARNIPTYNVSATTPREAYPLDKIILKGEWSYLEDLYSLLQEEAEISAKYPSFVRNRIYKL

Query:  QDVQDEEEKKQLCSIFSYITHLIKYKDQHSMGDVASAKSHKFPSMIRQKFSSMFPTSEARRLSTETINLLISHVLVLTLFADEFSSDPSDIAKDLRTSPY
        QDVQDEEEKKQLCSIFSYITHLIKYKDQHSMGDVASAKSHKFPSMIRQKFSSMFPTSEARRLSTETINLLISHVLVLTLFADEFSSDPSDIAKDLRTSPY
Subjt:  QDVQDEEEKKQLCSIFSYITHLIKYKDQHSMGDVASAKSHKFPSMIRQKFSSMFPTSEARRLSTETINLLISHVLVLTLFADEFSSDPSDIAKDLRTSPY

Query:  DLRLHFDNLGCKFIRKNNLSLVTLPTPLEFPELRQKRRR
        DLRLHFDNLGCKFIRKNNLSLVTLPTPLEFPELRQKRRR
Subjt:  DLRLHFDNLGCKFIRKNNLSLVTLPTPLEFPELRQKRRR

XP_022992259.1 DNA-directed RNA polymerase I subunit rpa49-like [Cucurbita maxima]

6.6e-240

98.41

Show/hide

Query:  MAEDTKSFELEDNHYSEPDSNLQSPAKKKKKSEKKKKRVPSVNAKIQVLSNHPQKTPPLVCYFPSGFDPHKDVNEEAVEEQDSVRARVYRHKNKPNRMQL
        MAEDTKSFELEDNHYSEPD+N QSPAKKKKKSEKKKKRVPSVNAKIQVLSNHPQKTPPLVCYFPSGFDPHKD NEEAVEEQDSVRARVYRHKNKPNRMQL
Subjt:  MAEDTKSFELEDNHYSEPDSNLQSPAKKKKKSEKKKKRVPSVNAKIQVLSNHPQKTPPLVCYFPSGFDPHKDVNEEAVEEQDSVRARVYRHKNKPNRMQL

Query:  VVSPTGSNVDFVGTNYLGEATAGKQHCSYGLGVLDKATQSLKIVPIASNMIFRLDPRIRGSDVSEMESPSVENEELSVQEKAEKMRELTNLYGTKKSINQ
        VVSPTGSNVDFVGTNYLGEATAGKQHCSYGLGVLDKATQSLKIVPIASNMIFRLDPRIRGSDVSEMES SVENEELSVQEKAEKMRELTNLYGTKKSINQ
Subjt:  VVSPTGSNVDFVGTNYLGEATAGKQHCSYGLGVLDKATQSLKIVPIASNMIFRLDPRIRGSDVSEMESPSVENEELSVQEKAEKMRELTNLYGTKKSINQ

Query:  AKKLRSLKQEDDPDTKKDLDGKMKNVVVNKEALESTGAQIARNIPTYNVSATTPREAYPLDKIILKGEWSYLEDLYSLLQEEAEISAKYPSFVRNRIYKL
        AKKL SLKQEDDPDTKKDLDGKMKNVVVNKEALESTGAQIARNIPTYNVSATTPREAYPLDKIILKGEWS+LED+YSLLQEEAEISAKYPSFVRNRIYKL
Subjt:  AKKLRSLKQEDDPDTKKDLDGKMKNVVVNKEALESTGAQIARNIPTYNVSATTPREAYPLDKIILKGEWSYLEDLYSLLQEEAEISAKYPSFVRNRIYKL

Query:  QDVQDEEEKKQLCSIFSYITHLIKYKDQHSMGDVASAKSHKFPSMIRQKFSSMFPTSEARRLSTETINLLISHVLVLTLFADEFSSDPSDIAKDLRTSPY
        QDVQDEEEKKQLCSIFSYITHLIKYKDQHSMGDVASAKSHKFPSMIRQKFSSMFPTSEARRLSTETINLLISHVLVLTLFADEFSSDPSDIAKDLRTSPY
Subjt:  QDVQDEEEKKQLCSIFSYITHLIKYKDQHSMGDVASAKSHKFPSMIRQKFSSMFPTSEARRLSTETINLLISHVLVLTLFADEFSSDPSDIAKDLRTSPY

Query:  DLRLHFDNLGCKFIRKNNLSLVTLPTPLEFPELRQKRRR
        DLRLHFDNLGCKFIRKNNLSLVTLPTPLEFPELRQKRRR
Subjt:  DLRLHFDNLGCKFIRKNNLSLVTLPTPLEFPELRQKRRR

XP_023547949.1 DNA-directed RNA polymerase I subunit rpa49-like [Cucurbita pepo subsp. pepo]

4.9e-243

99.77

Show/hide

Query:  MAEDTKSFELEDNHYSEPDSNLQSPAKKKKKSEKKKKRVPSVNAKIQVLSNHPQKTPPLVCYFPSGFDPHKDVNEEAVEEQDSVRARVYRHKNKPNRMQL
        MAEDTKSFELEDNHYSEPDSNLQSPAKKKKKSEKKKKRVPSVNAKIQVLSNHPQKTPPLVCYFPSGFDPHKDVNEEAVEEQDSVRARVYRHKNKPNRMQL
Subjt:  MAEDTKSFELEDNHYSEPDSNLQSPAKKKKKSEKKKKRVPSVNAKIQVLSNHPQKTPPLVCYFPSGFDPHKDVNEEAVEEQDSVRARVYRHKNKPNRMQL

Query:  VVSPTGSNVDFVGTNYLGEATAGKQHCSYGLGVLDKATQSLKIVPIASNMIFRLDPRIRGSDVSEMESPSVENEELSVQEKAEKMRELTNLYGTKKSINQ
        VVSPTGSNVDFVGTNYLGEATAGKQHCSYGLGVLDKATQSLKIVPIASNMIFRLDPRIRGSDVSEMESPSVENEELSVQEKAEKMRELTNLYGTKKSINQ
Subjt:  VVSPTGSNVDFVGTNYLGEATAGKQHCSYGLGVLDKATQSLKIVPIASNMIFRLDPRIRGSDVSEMESPSVENEELSVQEKAEKMRELTNLYGTKKSINQ

Query:  AKKLRSLKQEDDPDTKKDLDGKMKNVVVNKEALESTGAQIARNIPTYNVSATTPREAYPLDKIILKGEWSYLEDLYSLLQEEAEISAKYPSFVRNRIYKL
        AKKL SLKQEDDPDTKKDLDGKMKNVVVNKEALESTGAQIARNIPTYNVSATTPREAYPLDKIILKGEWSYLEDLYSLLQEEAEISAKYPSFVRNRIYKL
Subjt:  AKKLRSLKQEDDPDTKKDLDGKMKNVVVNKEALESTGAQIARNIPTYNVSATTPREAYPLDKIILKGEWSYLEDLYSLLQEEAEISAKYPSFVRNRIYKL

Query:  QDVQDEEEKKQLCSIFSYITHLIKYKDQHSMGDVASAKSHKFPSMIRQKFSSMFPTSEARRLSTETINLLISHVLVLTLFADEFSSDPSDIAKDLRTSPY
        QDVQDEEEKKQLCSIFSYITHLIKYKDQHSMGDVASAKSHKFPSMIRQKFSSMFPTSEARRLSTETINLLISHVLVLTLFADEFSSDPSDIAKDLRTSPY
Subjt:  QDVQDEEEKKQLCSIFSYITHLIKYKDQHSMGDVASAKSHKFPSMIRQKFSSMFPTSEARRLSTETINLLISHVLVLTLFADEFSSDPSDIAKDLRTSPY

Query:  DLRLHFDNLGCKFIRKNNLSLVTLPTPLEFPELRQKRRR
        DLRLHFDNLGCKFIRKNNLSLVTLPTPLEFPELRQKRRR
Subjt:  DLRLHFDNLGCKFIRKNNLSLVTLPTPLEFPELRQKRRR

XP_038896156.1 DNA-directed RNA polymerase I subunit rpa49 [Benincasa hispida]

3.9e-208

85.88

Show/hide

Query:  MAEDTKSFELEDNHYSEPDSNLQSPAKKKKKSEKKKKRVPSVNAKIQVLSNHPQKTPPLVCYFPSGFDPHKDVNEEAVEEQDSVRARVYRHKNKPNRMQL
        MAEDTKS ELE+NHY+E D+N +SPAKKKKKSEKKKKRVPSVNAKIQVL NHPQKTPP+V YFPSGFDPHKD    A EEQ+SVRARVY+HKNKPNRMQL
Subjt:  MAEDTKSFELEDNHYSEPDSNLQSPAKKKKKSEKKKKRVPSVNAKIQVLSNHPQKTPPLVCYFPSGFDPHKDVNEEAVEEQDSVRARVYRHKNKPNRMQL

Query:  VVSPTGSNVDFVGTNYLGEATAGKQHCSYGLGVLDKATQSLKIVPIASNMIFRLDPRIRGSDVSEMESPSVENEELSVQEKAEKMRELTNLYGTKKSINQ
        VVSPTGSNVDFVGTNYLGEATAGKQHC+Y LGVLDKATQSLKIVPIASNMIFRLDP++RGSDVSE ESPSV NEELSVQEKA++MRELT LYGTKKS  Q
Subjt:  VVSPTGSNVDFVGTNYLGEATAGKQHCSYGLGVLDKATQSLKIVPIASNMIFRLDPRIRGSDVSEMESPSVENEELSVQEKAEKMRELTNLYGTKKSINQ

Query:  AKKLRSLKQEDDPDTKKDLDGKMKNVVVNKEALESTGAQIARNIPTYNVSATTPREAYPLDKIILKGEWSYLEDLYSLLQEEAEISAKYPSFVRNRIYKL
        A+KL +LKQEDDPDTKKDLD +MKNVVVN EALE T A+IARNIPTYN SATTP+EAYPLDKIILKGEW++LEDLY  LQE AEISA YP FVR+RIYKL
Subjt:  AKKLRSLKQEDDPDTKKDLDGKMKNVVVNKEALESTGAQIARNIPTYNVSATTPREAYPLDKIILKGEWSYLEDLYSLLQEEAEISAKYPSFVRNRIYKL

Query:  QDVQDEEEKKQLCSIFSYITHLIKYKDQHSMGDVASAKSHKFPSMIRQKFSSMFPTSEARRLSTETINLLISHVLVLTLFADEFSSDPSDIAKDLRTSPY
        QD+QDEEEKK+LC IFSYITHLIKYKDQHSMGDV+SAK HK PSM+RQKFSSMFPTSE+RR+STE INLLISHVLVLTLF DEFSSDP+DIAKDLRTSPY
Subjt:  QDVQDEEEKKQLCSIFSYITHLIKYKDQHSMGDVASAKSHKFPSMIRQKFSSMFPTSEARRLSTETINLLISHVLVLTLFADEFSSDPSDIAKDLRTSPY

Query:  DLRLHFDNLGCKFIRKNNLSLVTLPTPLEFPELRQKRRR
        DLRLHFDNLGCKFIRKNNLSLVTLP PL+FP+LRQKRRR
Subjt:  DLRLHFDNLGCKFIRKNNLSLVTLPTPLEFPELRQKRRR

TrEMBL top hits

e value

%identity

Alignment

A0A1S3CH93 DNA-directed RNA polymerase I subunit rpa49

5.3e-203

83.37

Show/hide

Query:  MAEDTKSFELEDNHYSEPDSNLQSPAKKKKKSEKKKKRVPSVNAKIQVLSNHPQKTPPLVCYFPSGFDPHKDVNEEAVEEQDSVRARVYRHKNKPNRMQL
        MAEDTKS E E+NH +EPD+N QSPAKKKKKSEKKKKRV S+NAKIQVLSN PQK PP+V YFPSGFDPHKD ++   E+  SVRARVY+H+NKPNRMQL
Subjt:  MAEDTKSFELEDNHYSEPDSNLQSPAKKKKKSEKKKKRVPSVNAKIQVLSNHPQKTPPLVCYFPSGFDPHKDVNEEAVEEQDSVRARVYRHKNKPNRMQL

Query:  VVSPTGSNVDFVGTNYLGEATAGKQHCSYGLGVLDKATQSLKIVPIASNMIFRLDPRIRGSDVSEMESPSVENEELSVQEKAEKMRELTNLYGTKKSINQ
        VVSPTGSNVDFVGTNYLGEATAGKQHC+Y LGVLDKATQSLKIVPIASNMI RLDP++RGSDVSE ESPSV NEELS+QEKA +MRELT LYGTKKS  Q
Subjt:  VVSPTGSNVDFVGTNYLGEATAGKQHCSYGLGVLDKATQSLKIVPIASNMIFRLDPRIRGSDVSEMESPSVENEELSVQEKAEKMRELTNLYGTKKSINQ

Query:  AKKLRSLKQEDDPDTKKDLDGKMKNVVVNKEALESTGAQIARNIPTYNVSATTPREAYPLDKIILKGEWSYLEDLYSLLQEEAEISAKYPSFVRNRIYKL
        A+KL +LKQEDDP+TK DLDG+MKNVVVNKEALE T A+IARNIP YN SATTP+E YPLDKIILKGEWS+LEDLY  L+E AEI+A YPSFVRNRIYKL
Subjt:  AKKLRSLKQEDDPDTKKDLDGKMKNVVVNKEALESTGAQIARNIPTYNVSATTPREAYPLDKIILKGEWSYLEDLYSLLQEEAEISAKYPSFVRNRIYKL

Query:  QDVQDEEEKKQLCSIFSYITHLIKYKDQHSMGDVASAKSHKFPSMIRQKFSSMFPTSEARRLSTETINLLISHVLVLTLFADEFSSDPSDIAKDLRTSPY
        QD+QDEEEKK+LC IFSYITHLIKYKDQHSMGDV+SAK HK PSM+RQKFSSMFPT+E+RRLS + INLLISHVLVLTLFADEFSSDP+DIAKDLRTSPY
Subjt:  QDVQDEEEKKQLCSIFSYITHLIKYKDQHSMGDVASAKSHKFPSMIRQKFSSMFPTSEARRLSTETINLLISHVLVLTLFADEFSSDPSDIAKDLRTSPY

Query:  DLRLHFDNLGCKFIRKNNLSLVTLPTPLEFPELRQKRRR
        DLRLHFDNLGCKFIRKNNLSL TLP PL+FPELRQKRRR
Subjt:  DLRLHFDNLGCKFIRKNNLSLVTLPTPLEFPELRQKRRR

A0A5D3BXN3 DNA-directed RNA polymerase I subunit rpa49

1.8e-203

83.6

Show/hide

Query:  MAEDTKSFELEDNHYSEPDSNLQSPAKKKKKSEKKKKRVPSVNAKIQVLSNHPQKTPPLVCYFPSGFDPHKDVNEEAVEEQDSVRARVYRHKNKPNRMQL
        MAEDTKS ELE+NH +EPD+N QSPAKKKKKSEKKKKRV S+NAKIQVLSN PQK PP+V YFPSGFDPHKD ++   E+  SVRARVY+H+NKPNRMQL
Subjt:  MAEDTKSFELEDNHYSEPDSNLQSPAKKKKKSEKKKKRVPSVNAKIQVLSNHPQKTPPLVCYFPSGFDPHKDVNEEAVEEQDSVRARVYRHKNKPNRMQL

Query:  VVSPTGSNVDFVGTNYLGEATAGKQHCSYGLGVLDKATQSLKIVPIASNMIFRLDPRIRGSDVSEMESPSVENEELSVQEKAEKMRELTNLYGTKKSINQ
        VVSPTGSNVDFVGTNYLGEATAGKQHC+Y LGVLDKATQSLKIVPIASNMI RLDP++RGSDVSE ESPSV NEELS+QEKA +MRELT LYGTKKS  Q
Subjt:  VVSPTGSNVDFVGTNYLGEATAGKQHCSYGLGVLDKATQSLKIVPIASNMIFRLDPRIRGSDVSEMESPSVENEELSVQEKAEKMRELTNLYGTKKSINQ

Query:  AKKLRSLKQEDDPDTKKDLDGKMKNVVVNKEALESTGAQIARNIPTYNVSATTPREAYPLDKIILKGEWSYLEDLYSLLQEEAEISAKYPSFVRNRIYKL
        A+KL +LKQEDDP+TK DLDG+MKNVVVNKEALE T A+IARNIP YN SATTP+E YPLDKIILKGEWS+LEDLY  L+E AEI+A YPSFVRNRIYKL
Subjt:  AKKLRSLKQEDDPDTKKDLDGKMKNVVVNKEALESTGAQIARNIPTYNVSATTPREAYPLDKIILKGEWSYLEDLYSLLQEEAEISAKYPSFVRNRIYKL

Query:  QDVQDEEEKKQLCSIFSYITHLIKYKDQHSMGDVASAKSHKFPSMIRQKFSSMFPTSEARRLSTETINLLISHVLVLTLFADEFSSDPSDIAKDLRTSPY
        QD+QDEEEKK+LC IFSYITHLIKYKDQHSMGDV+SAK HK PSM+RQKFSSMFPT+E+RRLS + INLLISHVLVLTLFADEFSSDP+DIAKDLRTSPY
Subjt:  QDVQDEEEKKQLCSIFSYITHLIKYKDQHSMGDVASAKSHKFPSMIRQKFSSMFPTSEARRLSTETINLLISHVLVLTLFADEFSSDPSDIAKDLRTSPY

Query:  DLRLHFDNLGCKFIRKNNLSLVTLPTPLEFPELRQKRRR
        DLRLHFDNLGCKFIRKNNLSL TLP PL+FPELRQKRRR
Subjt:  DLRLHFDNLGCKFIRKNNLSLVTLPTPLEFPELRQKRRR

A0A6J1GQS4 DNA-directed RNA polymerase I subunit rpa49-like

6.2e-244

100

Show/hide

Query:  MAEDTKSFELEDNHYSEPDSNLQSPAKKKKKSEKKKKRVPSVNAKIQVLSNHPQKTPPLVCYFPSGFDPHKDVNEEAVEEQDSVRARVYRHKNKPNRMQL
        MAEDTKSFELEDNHYSEPDSNLQSPAKKKKKSEKKKKRVPSVNAKIQVLSNHPQKTPPLVCYFPSGFDPHKDVNEEAVEEQDSVRARVYRHKNKPNRMQL
Subjt:  MAEDTKSFELEDNHYSEPDSNLQSPAKKKKKSEKKKKRVPSVNAKIQVLSNHPQKTPPLVCYFPSGFDPHKDVNEEAVEEQDSVRARVYRHKNKPNRMQL

Query:  VVSPTGSNVDFVGTNYLGEATAGKQHCSYGLGVLDKATQSLKIVPIASNMIFRLDPRIRGSDVSEMESPSVENEELSVQEKAEKMRELTNLYGTKKSINQ
        VVSPTGSNVDFVGTNYLGEATAGKQHCSYGLGVLDKATQSLKIVPIASNMIFRLDPRIRGSDVSEMESPSVENEELSVQEKAEKMRELTNLYGTKKSINQ
Subjt:  VVSPTGSNVDFVGTNYLGEATAGKQHCSYGLGVLDKATQSLKIVPIASNMIFRLDPRIRGSDVSEMESPSVENEELSVQEKAEKMRELTNLYGTKKSINQ

Query:  AKKLRSLKQEDDPDTKKDLDGKMKNVVVNKEALESTGAQIARNIPTYNVSATTPREAYPLDKIILKGEWSYLEDLYSLLQEEAEISAKYPSFVRNRIYKL
        AKKLRSLKQEDDPDTKKDLDGKMKNVVVNKEALESTGAQIARNIPTYNVSATTPREAYPLDKIILKGEWSYLEDLYSLLQEEAEISAKYPSFVRNRIYKL
Subjt:  AKKLRSLKQEDDPDTKKDLDGKMKNVVVNKEALESTGAQIARNIPTYNVSATTPREAYPLDKIILKGEWSYLEDLYSLLQEEAEISAKYPSFVRNRIYKL

Query:  QDVQDEEEKKQLCSIFSYITHLIKYKDQHSMGDVASAKSHKFPSMIRQKFSSMFPTSEARRLSTETINLLISHVLVLTLFADEFSSDPSDIAKDLRTSPY
        QDVQDEEEKKQLCSIFSYITHLIKYKDQHSMGDVASAKSHKFPSMIRQKFSSMFPTSEARRLSTETINLLISHVLVLTLFADEFSSDPSDIAKDLRTSPY
Subjt:  QDVQDEEEKKQLCSIFSYITHLIKYKDQHSMGDVASAKSHKFPSMIRQKFSSMFPTSEARRLSTETINLLISHVLVLTLFADEFSSDPSDIAKDLRTSPY

Query:  DLRLHFDNLGCKFIRKNNLSLVTLPTPLEFPELRQKRRR
        DLRLHFDNLGCKFIRKNNLSLVTLPTPLEFPELRQKRRR
Subjt:  DLRLHFDNLGCKFIRKNNLSLVTLPTPLEFPELRQKRRR

A0A6J1HM51 DNA-directed RNA polymerase I subunit rpa49-like

2.7e-202

82.92

Show/hide

Query:  MAEDTKSFELEDNHYSEPDSNLQSPAKKKKKSEKKKKRVPSVNAKIQVLSNHPQKTPPLVCYFPSGFDPHKDVNEEAVEEQDSVRARVYRHKNKPNRMQL
        MA D+K F  E+ HY+EP++N QSPAKKKKKSEKKKKRVP VN KIQVLSNHP+K PPLV YFPSG+DP+KD NEE VEEQ+SVRA+VYRHK KPNRMQL
Subjt:  MAEDTKSFELEDNHYSEPDSNLQSPAKKKKKSEKKKKRVPSVNAKIQVLSNHPQKTPPLVCYFPSGFDPHKDVNEEAVEEQDSVRARVYRHKNKPNRMQL

Query:  VVSPTGSNVDFVGTNYLGEATAGKQHCSYGLGVLDKATQSLKIVPIASNMIFRLDPRIRGSDVSEMESPSVENEELSVQEKAEKMRELTNLYGTKKSINQ
        VVSPTGSNVDFVGTNYLGEATAGKQHCSY LGVLDKATQSLKIVPIASNMIFRLDP++RGSDV E ESPSV N+ELSVQEKA++MREL+NLYGTKKSI Q
Subjt:  VVSPTGSNVDFVGTNYLGEATAGKQHCSYGLGVLDKATQSLKIVPIASNMIFRLDPRIRGSDVSEMESPSVENEELSVQEKAEKMRELTNLYGTKKSINQ

Query:  AKKLRSLKQEDDPDTKKDLDGKMKNVVVNKEALESTGAQIARNIPTYNVSATTPREAYPLDKIILKGEWSYLEDLYSLLQEEAEISAKYPSFVRNRIYKL
        AKKL SLKQEDDP+TKKDLDGKMKNVVVNKEALES+ AQI+RNIPTYN SATTP+EAYPLDKIILKGEW +LEDLY LLQ E+EISA YPSFVRNRIYKL
Subjt:  AKKLRSLKQEDDPDTKKDLDGKMKNVVVNKEALESTGAQIARNIPTYNVSATTPREAYPLDKIILKGEWSYLEDLYSLLQEEAEISAKYPSFVRNRIYKL

Query:  QDVQDEEEKKQLCSIFSYITHLIKYKDQHSMGDVASAKSHKFPSMIRQKFSSMFPTSEARRLSTETINLLISHVLVLTLFADEFSSDPSDIAKDLRTSPY
        QD+QDEEEKK+LC I+SYITHLIKYKDQHSM  V+S K HK PSM+RQKFSSMF T+E+RRLS E  +LLISHVLVL LF DEFSSDPSDIA+DLRTSP+
Subjt:  QDVQDEEEKKQLCSIFSYITHLIKYKDQHSMGDVASAKSHKFPSMIRQKFSSMFPTSEARRLSTETINLLISHVLVLTLFADEFSSDPSDIAKDLRTSPY

Query:  DLRLHFDNLGCKFIRKNNLSLVTLPTPLEFPELRQKRRR
         LR+H+DNLGCKFIRKNNLSLVTLP PL+FPELR+KRRR
Subjt:  DLRLHFDNLGCKFIRKNNLSLVTLPTPLEFPELRQKRRR

A0A6J1JX25 DNA-directed RNA polymerase I subunit rpa49-like

3.2e-240

98.41

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Query:  MAEDTKSFELEDNHYSEPDSNLQSPAKKKKKSEKKKKRVPSVNAKIQVLSNHPQKTPPLVCYFPSGFDPHKDVNEEAVEEQDSVRARVYRHKNKPNRMQL
        MAEDTKSFELEDNHYSEPD+N QSPAKKKKKSEKKKKRVPSVNAKIQVLSNHPQKTPPLVCYFPSGFDPHKD NEEAVEEQDSVRARVYRHKNKPNRMQL
Subjt:  MAEDTKSFELEDNHYSEPDSNLQSPAKKKKKSEKKKKRVPSVNAKIQVLSNHPQKTPPLVCYFPSGFDPHKDVNEEAVEEQDSVRARVYRHKNKPNRMQL

Query:  VVSPTGSNVDFVGTNYLGEATAGKQHCSYGLGVLDKATQSLKIVPIASNMIFRLDPRIRGSDVSEMESPSVENEELSVQEKAEKMRELTNLYGTKKSINQ
        VVSPTGSNVDFVGTNYLGEATAGKQHCSYGLGVLDKATQSLKIVPIASNMIFRLDPRIRGSDVSEMES SVENEELSVQEKAEKMRELTNLYGTKKSINQ
Subjt:  VVSPTGSNVDFVGTNYLGEATAGKQHCSYGLGVLDKATQSLKIVPIASNMIFRLDPRIRGSDVSEMESPSVENEELSVQEKAEKMRELTNLYGTKKSINQ

Query:  AKKLRSLKQEDDPDTKKDLDGKMKNVVVNKEALESTGAQIARNIPTYNVSATTPREAYPLDKIILKGEWSYLEDLYSLLQEEAEISAKYPSFVRNRIYKL
        AKKL SLKQEDDPDTKKDLDGKMKNVVVNKEALESTGAQIARNIPTYNVSATTPREAYPLDKIILKGEWS+LED+YSLLQEEAEISAKYPSFVRNRIYKL
Subjt:  AKKLRSLKQEDDPDTKKDLDGKMKNVVVNKEALESTGAQIARNIPTYNVSATTPREAYPLDKIILKGEWSYLEDLYSLLQEEAEISAKYPSFVRNRIYKL

Query:  QDVQDEEEKKQLCSIFSYITHLIKYKDQHSMGDVASAKSHKFPSMIRQKFSSMFPTSEARRLSTETINLLISHVLVLTLFADEFSSDPSDIAKDLRTSPY
        QDVQDEEEKKQLCSIFSYITHLIKYKDQHSMGDVASAKSHKFPSMIRQKFSSMFPTSEARRLSTETINLLISHVLVLTLFADEFSSDPSDIAKDLRTSPY
Subjt:  QDVQDEEEKKQLCSIFSYITHLIKYKDQHSMGDVASAKSHKFPSMIRQKFSSMFPTSEARRLSTETINLLISHVLVLTLFADEFSSDPSDIAKDLRTSPY

Query:  DLRLHFDNLGCKFIRKNNLSLVTLPTPLEFPELRQKRRR
        DLRLHFDNLGCKFIRKNNLSLVTLPTPLEFPELRQKRRR
Subjt:  DLRLHFDNLGCKFIRKNNLSLVTLPTPLEFPELRQKRRR

SwissProt top hits

e value

%identity

Alignment

O14086 DNA-directed RNA polymerase I subunit rpa49

1.4e-06

23.3

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Query:  KKKSEKKKKRVPSVNAKIQVLSNHPQKTPPLVCYFPSGFDPHKDVNEEAVEEQDSVRARVYRHKNKPNRMQLVVSPTGSNVDFVGTNYLGEATAGKQHCS
        K K  K +         +++L       PPLV    SGF P            ++ R ++ +  N+ NR   ++  T   V F   N   ++TA  +  +
Subjt:  KKKSEKKKKRVPSVNAKIQVLSNHPQKTPPLVCYFPSGFDPHKDVNEEAVEEQDSVRARVYRHKNKPNRMQLVVSPTGSNVDFVGTNYLGEATAGKQHCS

Query:  YGLGVLDKATQSLKIVPIASNMIFRLDPRIRGSDVSEMESPSVENEELSVQEKAEKMRELTNL-YGTKKSIN--QAKKLRSLKQEDDPDTKKDLDGKMKN
        Y L V DK  +  KIVP      F      R     + +   ++ +  +V     + R    L +GT+KS      +    +K E   D K  L   ++ 
Subjt:  YGLGVLDKATQSLKIVPIASNMIFRLDPRIRGSDVSEMESPSVENEELSVQEKAEKMRELTNL-YGTKKSIN--QAKKLRSLKQEDDPDTKKDLDGKMKN

Query:  VVVNKEALESTGAQIA--RNIPTYNVSATTPREAYPLDKIILKGEWS--YLEDLYSLLQEE---AEISAKYPSFVRNRIYKLQDVQDEEEKKQLCSIFSY
                E   A  A  R IP  NV A +  +AY L+ II K E+S  Y++ L     E      +  ++  F+  R  +L  +++ ++K+    I  Y
Subjt:  VVVNKEALESTGAQIA--RNIPTYNVSATTPREAYPLDKIILKGEWS--YLEDLYSLLQEE---AEISAKYPSFVRNRIYKLQDVQDEEEKKQLCSIFSY

Query:  ITHLIKYK-DQHSMG--DVASAKSHKFPSMIRQKFSSMFPTSE---ARRLSTETINLLISHVLVLTLFADEFSSDPSDIAKDLRTSPYDLRLHFDNLGCK
        I+ L  +   + S+G  +    K    P ++       F  +    + ++S+  ++ +I ++LVL L  D +S+D   +A DL          F  +GC+
Subjt:  ITHLIKYK-DQHSMG--DVASAKSHKFPSMIRQKFSSMFPTSE---ARRLSTETINLLISHVLVLTLFADEFSSDPSDIAKDLRTSPYDLRLHFDNLGCK

Query:  FIR---------------KNNLSLVTLPTPLEFPELRQKRRR
         +                  N     L  PLEFP+ R+ R R
Subjt:  FIR---------------KNNLSLVTLPTPLEFPELRQKRRR

Arabidopsis top hits

e value

%identity

Alignment

AT3G13940.1 DNA binding;DNA-directed RNA polymerases

1.2e-98

44.67

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Query:  EDNHYSEPDSNLQSPAKKKKKSEKKKKRVPS----------VNAKIQVLSNHPQKTPPLVCYFPSGFDPHKDVNEEAVEEQDSVRARVYRHK-NKPNRMQ
        E N Y   + +  +P + +KK  K KK              V  K+  ++  P +  P+V YF +G+DP K   +      ++ +  VY+HK +   R+Q
Subjt:  EDNHYSEPDSNLQSPAKKKKKSEKKKKRVPS----------VNAKIQVLSNHPQKTPPLVCYFPSGFDPHKDVNEEAVEEQDSVRARVYRHK-NKPNRMQ

Query:  LVVSPTGSNVDFVGTNYLGEATAGKQHCSYGLGVLDKATQSLKIVPIASNMIFRLDPRIRGSDVSEME-SPSVENEELSVQEKAEKMRELTNLYGTKKSI
        +VVSP G+ V+FVGTNY GE  A  Q  +Y +GV ++  ++L+I+P+A N I RL+PR++  + +E E S S   +EL   +  E+ R     Y TKK++
Subjt:  LVVSPTGSNVDFVGTNYLGEATAGKQHCSYGLGVLDKATQSLKIVPIASNMIFRLDPRIRGSDVSEME-SPSVENEELSVQEKAEKMRELTNLYGTKKSI

Query:  NQAKKLRSLKQEDDPDTKKDLDGKMKNVVVNKEALESTGAQIARNIPTYNVSATTPREAYPLDKIILKGEWSYLEDLYSLLQEEAEISAK-YPSFVRNRI
         + KK R+L   DD  T+K LDGK+  + VN  ALE T + +ARNIP YN +ATT  EAYPL+KII KG+WS+LED+Y LLQ+E E + + YP FVRNR+
Subjt:  NQAKKLRSLKQEDDPDTKKDLDGKMKNVVVNKEALESTGAQIARNIPTYNVSATTPREAYPLDKIILKGEWSYLEDLYSLLQEEAEISAK-YPSFVRNRI

Query:  YKLQDVQDEEEKKQLCSIFSYITHLIKYKDQHSMGDVASAKSHKFPSMIRQKFSSMFPTSEARRLSTETINLLISHVLVLTLFADEFSSDPSDIAKDLRT
        Y+L+D++D+ +K+ +C   + +THL+K+KD++SM    SAK HK P + RQKF+SMF  SE+ R+  + INLLIS+VLVL+L  D F +DP DIAKDLR 
Subjt:  YKLQDVQDEEEKKQLCSIFSYITHLIKYKDQHSMGDVASAKSHKFPSMIRQKFSSMFPTSEARRLSTETINLLISHVLVLTLFADEFSSDPSDIAKDLRT

Query:  SPYDLRLHFDNLGCKFIRKNNLSLVTLPTPLEFPELRQKRR
        S  +LR HF  LGCKF+++N+ ++ TLPTPL FPE+ ++RR
Subjt:  SPYDLRLHFDNLGCKFIRKNNLSLVTLPTPLEFPELRQKRR

Sequences

Show/hide sequences

CDS sequence

Show/hide CDS sequence

ATGGCGGAAGACACTAAATCTTTTGAATTAGAAGACAACCATTACTCAGAACCAGACTCAAACTTACAGTCCCCAGCGAAAAAAAAGAAGAAGAGTGAAAAGAAGAAGAA
GCGAGTTCCATCAGTGAATGCTAAAATCCAAGTTCTCAGCAACCATCCCCAGAAAACTCCGCCGCTAGTTTGTTATTTCCCGTCTGGGTTTGATCCTCACAAGGATGTCA
ATGAGGAAGCAGTCGAGGAACAGGATTCCGTAAGGGCTAGGGTTTATAGGCACAAAAACAAACCTAATAGGATGCAGCTGGTTGTGAGTCCAACAGGGTCGAATGTGGAT
TTTGTTGGTACCAATTATTTGGGCGAGGCTACCGCTGGGAAACAGCATTGCAGCTATGGTCTTGGTGTTCTCGACAAGGCCACCCAAAGCTTGAAGATAGTGCCTATTGC
ATCAAATATGATATTTAGATTGGATCCAAGAATCAGAGGTTCAGATGTTTCTGAAATGGAATCCCCAAGTGTGGAAAATGAAGAGCTTTCTGTGCAGGAGAAAGCTGAAA
AAATGAGAGAGCTCACCAATCTCTATGGAACAAAGAAGTCAATAAATCAGGCAAAGAAGCTGCGTTCTTTGAAGCAAGAGGATGATCCTGATACCAAGAAGGATCTTGAT
GGGAAAATGAAAAATGTAGTGGTGAACAAAGAGGCCTTGGAAAGTACGGGTGCACAAATTGCTCGTAATATACCGACATATAATGTTTCTGCAACTACTCCACGAGAAGC
TTACCCACTCGACAAGATTATCCTCAAGGGAGAATGGAGTTATCTGGAGGATCTTTATTCCCTTTTGCAAGAAGAAGCTGAAATAAGTGCAAAATATCCATCCTTTGTCC
GCAACAGAATTTATAAATTGCAAGATGTTCAGGACGAAGAGGAGAAGAAGCAGCTGTGTTCCATATTTTCATATATCACTCATCTAATAAAGTATAAGGATCAGCATTCC
ATGGGTGATGTTGCTTCTGCAAAGAGCCATAAATTTCCTAGCATGATACGCCAAAAGTTCTCATCCATGTTTCCGACTTCTGAGGCGCGAAGACTGTCAACAGAGACGAT
TAATCTTCTCATCAGTCACGTTTTAGTGCTTACGCTATTTGCCGATGAATTCAGTAGCGATCCATCAGACATAGCAAAGGATCTGAGAACTAGTCCTTACGATCTACGAC
TCCATTTTGATAACCTGGGTTGCAAGTTTATACGCAAGAACAACTTGTCATTGGTTACACTTCCTACCCCCCTTGAATTTCCCGAGTTGAGGCAGAAGAGACGACGATAA

mRNA sequence

Show/hide mRNA sequence

ATTTAAATATCACATAAAAAAAGGAAAAAAGGAAAAAAGAAAAGAAAAGAAAAGCCAAACCTTAAACCCTGCCTTCCCGTCCTCCCTCATTCGTTCTCTCCATCTCCCTC
TCCCTCTCCCATCTTTGCCGCCGCCGCACGTTCACCGGCACGCCTTCCAGGCCGCCGTGCCAATCACCAATCGCCGCCTCTTTCCTTAGCCGCTCGTCATCATTCGTGTG
TCTTGCTTTAACCACCGCTGCCGCTCCACGTACCGACGGCTAATTAGTCGATGCCATTGTCCATTGCCACCGGACTGTAATTCCTAAAGCCGCTTCCTCCCTGTAAATCG
ACGTGTTCGGTCGAGCAATCATTCGAAATCAGAGCTTGTCAACGGAGCAATGGCGGAAGACACTAAATCTTTTGAATTAGAAGACAACCATTACTCAGAACCAGACTCAA
ACTTACAGTCCCCAGCGAAAAAAAAGAAGAAGAGTGAAAAGAAGAAGAAGCGAGTTCCATCAGTGAATGCTAAAATCCAAGTTCTCAGCAACCATCCCCAGAAAACTCCG
CCGCTAGTTTGTTATTTCCCGTCTGGGTTTGATCCTCACAAGGATGTCAATGAGGAAGCAGTCGAGGAACAGGATTCCGTAAGGGCTAGGGTTTATAGGCACAAAAACAA
ACCTAATAGGATGCAGCTGGTTGTGAGTCCAACAGGGTCGAATGTGGATTTTGTTGGTACCAATTATTTGGGCGAGGCTACCGCTGGGAAACAGCATTGCAGCTATGGTC
TTGGTGTTCTCGACAAGGCCACCCAAAGCTTGAAGATAGTGCCTATTGCATCAAATATGATATTTAGATTGGATCCAAGAATCAGAGGTTCAGATGTTTCTGAAATGGAA
TCCCCAAGTGTGGAAAATGAAGAGCTTTCTGTGCAGGAGAAAGCTGAAAAAATGAGAGAGCTCACCAATCTCTATGGAACAAAGAAGTCAATAAATCAGGCAAAGAAGCT
GCGTTCTTTGAAGCAAGAGGATGATCCTGATACCAAGAAGGATCTTGATGGGAAAATGAAAAATGTAGTGGTGAACAAAGAGGCCTTGGAAAGTACGGGTGCACAAATTG
CTCGTAATATACCGACATATAATGTTTCTGCAACTACTCCACGAGAAGCTTACCCACTCGACAAGATTATCCTCAAGGGAGAATGGAGTTATCTGGAGGATCTTTATTCC
CTTTTGCAAGAAGAAGCTGAAATAAGTGCAAAATATCCATCCTTTGTCCGCAACAGAATTTATAAATTGCAAGATGTTCAGGACGAAGAGGAGAAGAAGCAGCTGTGTTC
CATATTTTCATATATCACTCATCTAATAAAGTATAAGGATCAGCATTCCATGGGTGATGTTGCTTCTGCAAAGAGCCATAAATTTCCTAGCATGATACGCCAAAAGTTCT
CATCCATGTTTCCGACTTCTGAGGCGCGAAGACTGTCAACAGAGACGATTAATCTTCTCATCAGTCACGTTTTAGTGCTTACGCTATTTGCCGATGAATTCAGTAGCGAT
CCATCAGACATAGCAAAGGATCTGAGAACTAGTCCTTACGATCTACGACTCCATTTTGATAACCTGGGTTGCAAGTTTATACGCAAGAACAACTTGTCATTGGTTACACT
TCCTACCCCCCTTGAATTTCCCGAGTTGAGGCAGAAGAGACGACGATAAGAGTGAGATGGCCATGGCCATGGTACTGCTGGCTGAAGAAGCTGAATTGTAGGCAGCGATT
TTGTGGAGTTAAAAAGGTAAATTGTCATATTTATATTTCATGTCATTTCTTTCATATTGCAAATGCAAACTTGTTTTTATGAAGTGGCTCTGCATAGAAGGGTGTTTTAT
CATTGAAAGTTGGAACTTTGGATGATGAAGCTTGTTTGGAAATGAGTCAAATCACTATGTTACTTTTGAATCTCCACTTTTTCGACGTGGAAGATAATTAGTGTCTTATC
TATTGAACTATGC

Protein sequence

Show/hide protein sequence

MAEDTKSFELEDNHYSEPDSNLQSPAKKKKKSEKKKKRVPSVNAKIQVLSNHPQKTPPLVCYFPSGFDPHKDVNEEAVEEQDSVRARVYRHKNKPNRMQLVVSPTGSNVD
FVGTNYLGEATAGKQHCSYGLGVLDKATQSLKIVPIASNMIFRLDPRIRGSDVSEMESPSVENEELSVQEKAEKMRELTNLYGTKKSINQAKKLRSLKQEDDPDTKKDLD
GKMKNVVVNKEALESTGAQIARNIPTYNVSATTPREAYPLDKIILKGEWSYLEDLYSLLQEEAEISAKYPSFVRNRIYKLQDVQDEEEKKQLCSIFSYITHLIKYKDQHS
MGDVASAKSHKFPSMIRQKFSSMFPTSEARRLSTETINLLISHVLVLTLFADEFSSDPSDIAKDLRTSPYDLRLHFDNLGCKFIRKNNLSLVTLPTPLEFPELRQKRRR

CmoCh17G006830 (gene) of Cucurbita moschata (Rifu) v1 genome