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CmoCh17G006890 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh17G006890
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
DescriptionDead-box atp-dependent rna helicase
Genome locationCmo_Chr17:7034179..7035871
RNA-Seq ExpressionCmoCh17G006890
SyntenyCmoCh17G006890
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6575466.1 hypothetical protein SDJN03_26105, partial [Cucurbita argyrosperma subsp. sororia]1.2e-3996.74Show/hide
Query:  MADQKTEIKDSSSEEKDAQAPNLSERAEEEIEAVGHHKESPHHHKETHGRSDDIDETTPAKEVKAPGVFGRVKEEIEAVVGEILPKKDSGDH
        MADQKTEIKDSSSEEKDA+APNLSERAEEEIEAVGHH ESPHHHKETHGRSDDIDETTPA+EVKAPGVFGRVKEEIEAVVGEILPKKDSGDH
Subjt:  MADQKTEIKDSSSEEKDAQAPNLSERAEEEIEAVGHHKESPHHHKETHGRSDDIDETTPAKEVKAPGVFGRVKEEIEAVVGEILPKKDSGDH

XP_022953832.1 uncharacterized protein LOC111456247 isoform X1 [Cucurbita moschata]3.9e-41100Show/hide
Query:  MADQKTEIKDSSSEEKDAQAPNLSERAEEEIEAVGHHKESPHHHKETHGRSDDIDETTPAKEVKAPGVFGRVKEEIEAVVGEILPKKDSGDH
        MADQKTEIKDSSSEEKDAQAPNLSERAEEEIEAVGHHKESPHHHKETHGRSDDIDETTPAKEVKAPGVFGRVKEEIEAVVGEILPKKDSGDH
Subjt:  MADQKTEIKDSSSEEKDAQAPNLSERAEEEIEAVGHHKESPHHHKETHGRSDDIDETTPAKEVKAPGVFGRVKEEIEAVVGEILPKKDSGDH

XP_022953833.1 uncharacterized protein LOC111456247 isoform X2 [Cucurbita moschata]2.8e-3998.91Show/hide
Query:  MADQKTEIKDSSSEEKDAQAPNLSERAEEEIEAVGHHKESPHHHKETHGRSDDIDETTPAKEVKAPGVFGRVKEEIEAVVGEILPKKDSGDH
        MADQKTEIKDSSS EKDAQAPNLSERAEEEIEAVGHHKESPHHHKETHGRSDDIDETTPAKEVKAPGVFGRVKEEIEAVVGEILPKKDSGDH
Subjt:  MADQKTEIKDSSSEEKDAQAPNLSERAEEEIEAVGHHKESPHHHKETHGRSDDIDETTPAKEVKAPGVFGRVKEEIEAVVGEILPKKDSGDH

XP_022992452.1 uncharacterized protein LOC111488752 isoform X1 [Cucurbita maxima]2.9e-3691.3Show/hide
Query:  MADQKTEIKDSSSEEKDAQAPNLSERAEEEIEAVGHHKESPHHHKETHGRSDDIDETTPAKEVKAPGVFGRVKEEIEAVVGEILPKKDSGDH
        M D KT IKDSSSEEKDA+APNLSERAEEEIEAV HH ESPHHHKETHGRSDDIDETTPA+EVKAPGVFGRVKEEIEAVVGEILPKKDSG+H
Subjt:  MADQKTEIKDSSSEEKDAQAPNLSERAEEEIEAVGHHKESPHHHKETHGRSDDIDETTPAKEVKAPGVFGRVKEEIEAVVGEILPKKDSGDH

XP_023547649.1 uncharacterized protein LOC111806528 isoform X1 [Cucurbita pepo subsp. pepo]8.4e-3690.22Show/hide
Query:  MADQKTEIKDSSSEEKDAQAPNLSERAEEEIEAVGHHKESPHHHKETHGRSDDIDETTPAKEVKAPGVFGRVKEEIEAVVGEILPKKDSGDH
        M D KTEIKDSSSEEKDA+APNLSERA+EE EAV HH ESPHHHKETHGRS+DIDETTPA+EVKAPGVFGRVKEEIEAVVGEILPKKDSGDH
Subjt:  MADQKTEIKDSSSEEKDAQAPNLSERAEEEIEAVGHHKESPHHHKETHGRSDDIDETTPAKEVKAPGVFGRVKEEIEAVVGEILPKKDSGDH

TrEMBL top hitse value%identityAlignment
A0A6J1CRC8 uncharacterized protein LOC111014044 isoform X15.3e-2877.17Show/hide
Query:  MADQKTEIKDSSSEEKDAQAPNLSERAEEEIEAVGHHKESPHHHKETHGRSDDIDETTPAKEVKAPGVFGRVKEEIEAVVGEILPKKDSGDH
        M + KT IKDSSSE KDA+APNL ERA+EEIEA+ H  +SP HHKETHGRSDDIDETTP+ EVKAPGVFGRVKEEIEA+VG I PKKDS +H
Subjt:  MADQKTEIKDSSSEEKDAQAPNLSERAEEEIEAVGHHKESPHHHKETHGRSDDIDETTPAKEVKAPGVFGRVKEEIEAVVGEILPKKDSGDH

A0A6J1GPD0 uncharacterized protein LOC111456247 isoform X11.9e-41100Show/hide
Query:  MADQKTEIKDSSSEEKDAQAPNLSERAEEEIEAVGHHKESPHHHKETHGRSDDIDETTPAKEVKAPGVFGRVKEEIEAVVGEILPKKDSGDH
        MADQKTEIKDSSSEEKDAQAPNLSERAEEEIEAVGHHKESPHHHKETHGRSDDIDETTPAKEVKAPGVFGRVKEEIEAVVGEILPKKDSGDH
Subjt:  MADQKTEIKDSSSEEKDAQAPNLSERAEEEIEAVGHHKESPHHHKETHGRSDDIDETTPAKEVKAPGVFGRVKEEIEAVVGEILPKKDSGDH

A0A6J1GPE2 uncharacterized protein LOC111456247 isoform X21.3e-3998.91Show/hide
Query:  MADQKTEIKDSSSEEKDAQAPNLSERAEEEIEAVGHHKESPHHHKETHGRSDDIDETTPAKEVKAPGVFGRVKEEIEAVVGEILPKKDSGDH
        MADQKTEIKDSSS EKDAQAPNLSERAEEEIEAVGHHKESPHHHKETHGRSDDIDETTPAKEVKAPGVFGRVKEEIEAVVGEILPKKDSGDH
Subjt:  MADQKTEIKDSSSEEKDAQAPNLSERAEEEIEAVGHHKESPHHHKETHGRSDDIDETTPAKEVKAPGVFGRVKEEIEAVVGEILPKKDSGDH

A0A6J1JPV5 uncharacterized protein LOC111488752 isoform X11.4e-3691.3Show/hide
Query:  MADQKTEIKDSSSEEKDAQAPNLSERAEEEIEAVGHHKESPHHHKETHGRSDDIDETTPAKEVKAPGVFGRVKEEIEAVVGEILPKKDSGDH
        M D KT IKDSSSEEKDA+APNLSERAEEEIEAV HH ESPHHHKETHGRSDDIDETTPA+EVKAPGVFGRVKEEIEAVVGEILPKKDSG+H
Subjt:  MADQKTEIKDSSSEEKDAQAPNLSERAEEEIEAVGHHKESPHHHKETHGRSDDIDETTPAKEVKAPGVFGRVKEEIEAVVGEILPKKDSGDH

A0A6J1JZ89 uncharacterized protein LOC111488752 isoform X21.0e-3490.22Show/hide
Query:  MADQKTEIKDSSSEEKDAQAPNLSERAEEEIEAVGHHKESPHHHKETHGRSDDIDETTPAKEVKAPGVFGRVKEEIEAVVGEILPKKDSGDH
        M D KT IKDSSS EKDA+APNLSERAEEEIEAV HH ESPHHHKETHGRSDDIDETTPA+EVKAPGVFGRVKEEIEAVVGEILPKKDSG+H
Subjt:  MADQKTEIKDSSSEEKDAQAPNLSERAEEEIEAVGHHKESPHHHKETHGRSDDIDETTPAKEVKAPGVFGRVKEEIEAVVGEILPKKDSGDH

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G17490.1 unknown protein2.9e-1048.61Show/hide
Query:  PNLSERAEEEIEAVG---HHKESPHHHKETHGRSDDIDETTPAKEVKAPGVFGRVKEEIEAVVGEILPKKDS
        P  S  +E +   +G     KES  H KETHGRS+DIDE T   +VK PGV GR+ EE+EA+V  + P K S
Subjt:  PNLSERAEEEIEAVG---HHKESPHHHKETHGRSDDIDETTPAKEVKAPGVFGRVKEEIEAVVGEILPKKDS

AT1G72690.1 unknown protein1.3e-1856.04Show/hide
Query:  MADQKTEIKDSSSEEKDAQAPNLSERAEEEIEAVGHHKESP--HHHKETHGRSDDIDETTPAKEVKAPGVFGRVKEEIEAVVGEILPKKDS
        MADQ      + SEEK  ++PN+ ER +EEIEA+GHH++S   HH KETHG SDDIDE+TP   VK PG F R+KEEIEA+   + PK+ S
Subjt:  MADQKTEIKDSSSEEKDAQAPNLSERAEEEIEAVGHHKESP--HHHKETHGRSDDIDETTPAKEVKAPGVFGRVKEEIEAVVGEILPKKDS

AT5G57000.1 unknown protein1.1e-1248.35Show/hide
Query:  KTEIKDSSSEEKDAQAPNLSERAEEEIEAVGHHKESP----HHHKETHGRSDDIDETTPAKEVKAPGVFGRVKEEIEAVVGEILPKKDSGD
        K E K S   E   + PN+ ++A E+++++   ++ P    HHHKETHGRSDDI E TP  EVKAP V  R KEEIEAV+  I  KK   D
Subjt:  KTEIKDSSSEEKDAQAPNLSERAEEEIEAVGHHKESP----HHHKETHGRSDDIDETTPAKEVKAPGVFGRVKEEIEAVVGEILPKKDSGD

AT5G57000.2 unknown protein2.4e-1245.05Show/hide
Query:  KTEIKDSSSEEKDAQAPNLSERAEEEIEAVGHHKESP----HHHKETHGRSDDIDETTPAKEVKAPGVFGRVKEEIEAVVGEILPKKDSGD
        K +++  S +    + PN+ ++A E+++++   ++ P    HHHKETHGRSDDI E TP  EVKAP V  R KEEIEAV+  I  KK   D
Subjt:  KTEIKDSSSEEKDAQAPNLSERAEEEIEAVGHHKESP----HHHKETHGRSDDIDETTPAKEVKAPGVFGRVKEEIEAVVGEILPKKDSGD


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCGGATCAAAAGACTGAGATCAAAGATTCTTCCTCAGAAGAAAAAGATGCACAAGCACCCAATCTTTCTGAGAGAGCGGAAGAAGAGATAGAGGCTGTAGGCCACCA
TAAAGAATCACCACACCATCACAAAGAAACACATGGAAGAAGTGATGATATTGATGAGACTACGCCCGCTAAAGAAGTAAAGGCCCCCGGAGTGTTTGGGAGAGTCAAGG
AAGAGATTGAGGCCGTAGTGGGAGAAATTCTTCCCAAGAAGGATTCTGGCGATCATTAG
mRNA sequenceShow/hide mRNA sequence
GTATACCGTCAGTTTCGTCGTAAACGGGGGAAGGGATGGTCCAGCGAGCGGACAGAAGAGCGAGGCCGGGTTAATCAATCCCAAGGAAAATCTCGAATGGCGGATCAAAA
GACTGAGATCAAAGATTCTTCCTCAGAAGAAAAAGATGCACAAGCACCCAATCTTTCTGAGAGAGCGGAAGAAGAGATAGAGGCTGTAGGCCACCATAAAGAATCACCAC
ACCATCACAAAGAAACACATGGAAGAAGTGATGATATTGATGAGACTACGCCCGCTAAAGAAGTAAAGGCCCCCGGAGTGTTTGGGAGAGTCAAGGAAGAGATTGAGGCC
GTAGTGGGAGAAATTCTTCCCAAGAAGGATTCTGGCGATCATTAGTTTTCTTTAAAGCAAGGAGAAGGGGGTTGACACCATGCTGTAATAATAAGGTTTGCTTTCTTCAA
TGATTCTTAGTTTCTTTCATGATGCAACTTGATGCCATCTGAACAGTTATTTGAAAATATTAGCTGCAAAATATCTTGTTTGAAGACAAATTGACATGAAAAGTAGACTG
TCTGATATGTCTGGCATTCATTTAAGTTTGTAAGCAACATAGAAATCCCATTAAGGTGTTTGTATATATTTATGTAGGTACCATTATATGTATATTGGCCAACAACCCTC
ATTTTCCTTTGCCTTATATTTGATTGTTTTCCTTTTCTA
Protein sequenceShow/hide protein sequence
MADQKTEIKDSSSEEKDAQAPNLSERAEEEIEAVGHHKESPHHHKETHGRSDDIDETTPAKEVKAPGVFGRVKEEIEAVVGEILPKKDSGDH