; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

CmoCh17G007440 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh17G007440
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
Descriptionprotein transport protein SEC13 homolog B-like
Genome locationCmo_Chr17:7371708..7372004
RNA-Seq ExpressionCmoCh17G007440
SyntenyCmoCh17G007440
Gene Ontology termsGO:0006606 - protein import into nucleus (biological process)
GO:0090114 - COPII-coated vesicle budding (biological process)
GO:0030127 - COPII vesicle coat (cellular component)
GO:0031080 - nuclear pore outer ring (cellular component)
GO:0005198 - structural molecule activity (molecular function)
GO:0005515 - protein binding (molecular function)
InterPro domainsIPR015943 - WD40/YVTN repeat-like-containing domain superfamily
IPR036322 - WD40-repeat-containing domain superfamily
IPR037363 - Sec13/Seh1 family


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6575515.1 Protein transport protein SEC13-like B, partial [Cucurbita argyrosperma subsp. sororia]2.7e-4896.94Show/hide
Query:  MPVQKIESGHQDTVHDVTMDYYGKRLATASSDQAIKIIGVSNSASQHLATLTGHQGPVWQAAWAHPKFGSLLASWFLRWTSDYMEGGQSERVESSPCF
        MPVQKIESGHQDTVHDVTMDYYGKRLATASSDQ IKIIGVSNSASQHLATLTGHQGPVWQAAWAHPKFGSLLASWFLRWTSDYMEGGQSER+ESSP F
Subjt:  MPVQKIESGHQDTVHDVTMDYYGKRLATASSDQAIKIIGVSNSASQHLATLTGHQGPVWQAAWAHPKFGSLLASWFLRWTSDYMEGGQSERVESSPCF

XP_022152847.1 protein transport protein SEC13 homolog B-like [Momordica charantia]2.1e-3295.95Show/hide
Query:  MPVQKIESGHQDTVHDVTMDYYGKRLATASSDQAIKIIGVSNSASQHLATLTGHQGPVWQAAWAHPKFGSLLAS
        MP QKIESGHQDTVHDV MDYYGKRLATASSDQ IKIIGVSNSASQHLATLTGHQGPVWQAAWAHPKFGSLLAS
Subjt:  MPVQKIESGHQDTVHDVTMDYYGKRLATASSDQAIKIIGVSNSASQHLATLTGHQGPVWQAAWAHPKFGSLLAS

XP_022964559.1 protein transport protein SEC13 homolog B-like [Cucurbita moschata]2.7e-3294.59Show/hide
Query:  MPVQKIESGHQDTVHDVTMDYYGKRLATASSDQAIKIIGVSNSASQHLATLTGHQGPVWQAAWAHPKFGSLLAS
        MP QKIESGHQDT+HDV MDYYGKRLATASSDQ IKIIGVSNSASQHLATLTGHQGPVWQAAWAHPKFGSLLAS
Subjt:  MPVQKIESGHQDTVHDVTMDYYGKRLATASSDQAIKIIGVSNSASQHLATLTGHQGPVWQAAWAHPKFGSLLAS

XP_023000376.1 protein transport protein SEC13 homolog B-like [Cucurbita maxima]2.1e-3295.95Show/hide
Query:  MPVQKIESGHQDTVHDVTMDYYGKRLATASSDQAIKIIGVSNSASQHLATLTGHQGPVWQAAWAHPKFGSLLAS
        MP QKIESGHQDTVHDV MDYYGKRLATASSDQ IKIIGVSNSASQHLATLTGHQGPVWQAAWAHPKFGSLLAS
Subjt:  MPVQKIESGHQDTVHDVTMDYYGKRLATASSDQAIKIIGVSNSASQHLATLTGHQGPVWQAAWAHPKFGSLLAS

XP_023548958.1 protein transport protein SEC13 homolog B-like [Cucurbita pepo subsp. pepo]1.9e-3398.65Show/hide
Query:  MPVQKIESGHQDTVHDVTMDYYGKRLATASSDQAIKIIGVSNSASQHLATLTGHQGPVWQAAWAHPKFGSLLAS
        MPVQKIESGHQDTVHDVTMDYYGKRLATASSDQ IKIIGVSNSASQHLATLTGHQGPVWQAAWAHPKFGSLLAS
Subjt:  MPVQKIESGHQDTVHDVTMDYYGKRLATASSDQAIKIIGVSNSASQHLATLTGHQGPVWQAAWAHPKFGSLLAS

TrEMBL top hitse value%identityAlignment
A0A1S3CHH1 protein transport protein SEC13 homolog B-like4.9e-3293.24Show/hide
Query:  MPVQKIESGHQDTVHDVTMDYYGKRLATASSDQAIKIIGVSNSASQHLATLTGHQGPVWQAAWAHPKFGSLLAS
        MP QKI+SGHQDTVHDV+MDYYGKRLAT SSDQ IKIIGVSNSASQHLATLTGHQGPVWQAAWAHPKFGSLLAS
Subjt:  MPVQKIESGHQDTVHDVTMDYYGKRLATASSDQAIKIIGVSNSASQHLATLTGHQGPVWQAAWAHPKFGSLLAS

A0A5A7UA12 Protein transport protein SEC13-like protein B-like4.9e-3293.24Show/hide
Query:  MPVQKIESGHQDTVHDVTMDYYGKRLATASSDQAIKIIGVSNSASQHLATLTGHQGPVWQAAWAHPKFGSLLAS
        MP QKI+SGHQDTVHDV+MDYYGKRLAT SSDQ IKIIGVSNSASQHLATLTGHQGPVWQAAWAHPKFGSLLAS
Subjt:  MPVQKIESGHQDTVHDVTMDYYGKRLATASSDQAIKIIGVSNSASQHLATLTGHQGPVWQAAWAHPKFGSLLAS

A0A6J1DHD2 protein transport protein SEC13 homolog B-like9.9e-3395.95Show/hide
Query:  MPVQKIESGHQDTVHDVTMDYYGKRLATASSDQAIKIIGVSNSASQHLATLTGHQGPVWQAAWAHPKFGSLLAS
        MP QKIESGHQDTVHDV MDYYGKRLATASSDQ IKIIGVSNSASQHLATLTGHQGPVWQAAWAHPKFGSLLAS
Subjt:  MPVQKIESGHQDTVHDVTMDYYGKRLATASSDQAIKIIGVSNSASQHLATLTGHQGPVWQAAWAHPKFGSLLAS

A0A6J1HNK7 protein transport protein SEC13 homolog B-like1.3e-3294.59Show/hide
Query:  MPVQKIESGHQDTVHDVTMDYYGKRLATASSDQAIKIIGVSNSASQHLATLTGHQGPVWQAAWAHPKFGSLLAS
        MP QKIESGHQDT+HDV MDYYGKRLATASSDQ IKIIGVSNSASQHLATLTGHQGPVWQAAWAHPKFGSLLAS
Subjt:  MPVQKIESGHQDTVHDVTMDYYGKRLATASSDQAIKIIGVSNSASQHLATLTGHQGPVWQAAWAHPKFGSLLAS

A0A6J1KFQ3 protein transport protein SEC13 homolog B-like9.9e-3395.95Show/hide
Query:  MPVQKIESGHQDTVHDVTMDYYGKRLATASSDQAIKIIGVSNSASQHLATLTGHQGPVWQAAWAHPKFGSLLAS
        MP QKIESGHQDTVHDV MDYYGKRLATASSDQ IKIIGVSNSASQHLATLTGHQGPVWQAAWAHPKFGSLLAS
Subjt:  MPVQKIESGHQDTVHDVTMDYYGKRLATASSDQAIKIIGVSNSASQHLATLTGHQGPVWQAAWAHPKFGSLLAS

SwissProt top hitse value%identityAlignment
A5DXE2 Protein transport protein SEC139.3e-2061.43Show/hide
Query:  IESGHQDTVHDVTMDYYGKRLATASSDQAIKIIGVSNSASQHL-ATLTGHQGPVWQAAWAHPKFGSLLAS
        I + H+D +HD  +DYYGKRLAT SSD+ IKI  +  + +  L ATLTGH+GP+WQ AWAHPKFGS+LAS
Subjt:  IESGHQDTVHDVTMDYYGKRLATASSDQAIKIIGVSNSASQHL-ATLTGHQGPVWQAAWAHPKFGSLLAS

O64740 Protein transport protein SEC13 homolog B1.0e-2676Show/hide
Query:  MPVQKIESGHQDTVHDVTMDYYGKRLATASSDQAIKIIGVSNS-ASQHLATLTGHQGPVWQAAWAHPKFGSLLAS
        MP QKIE+GH+D VHDV MDYYGKR+ATASSD  IKI GVSN+  SQ LATLTGH+GPVW+ AWAHPK+GS+LAS
Subjt:  MPVQKIESGHQDTVHDVTMDYYGKRLATASSDQAIKIIGVSNS-ASQHLATLTGHQGPVWQAAWAHPKFGSLLAS

O94319 Protein transport protein sec131.6e-1957.97Show/hide
Query:  IESGHQDTVHDVTMDYYGKRLATASSDQAIKIIGVSNSASQHLATLTGHQGPVWQAAWAHPKFGSLLAS
        +++ H D +HD  +DYYGKRLAT SSDQ IK+  + N+    L TL GH GPVWQ  WAHPKFG++LAS
Subjt:  IESGHQDTVHDVTMDYYGKRLATASSDQAIKIIGVSNSASQHLATLTGHQGPVWQAAWAHPKFGSLLAS

Q54DS8 Protein SEC13 homolog1.3e-2162.16Show/hide
Query:  MPVQKIESGHQDTVHDVTMDYYGKRLATASSDQAIKIIGVSNSASQHLATLTGHQGPVWQAAWAHPKFGSLLAS
        M  Q ++SGH+D VHD   DYYGK LAT SSD+ IKI  V     QHL  L GH+GPVWQ AWAHPKFG +LAS
Subjt:  MPVQKIESGHQDTVHDVTMDYYGKRLATASSDQAIKIIGVSNSASQHLATLTGHQGPVWQAAWAHPKFGSLLAS

Q9SRI1 Protein transport protein SEC13 homolog A2.2e-2982.67Show/hide
Query:  MPVQKIESGHQDTVHDVTMDYYGKRLATASSDQAIKIIGVSNS-ASQHLATLTGHQGPVWQAAWAHPKFGSLLAS
        MP QKIE+GH DT+HDV MDYYGKR+ATASSD  IKI GVSNS  SQHLATLTGH+GPVWQ AWAHPKFGSLLAS
Subjt:  MPVQKIESGHQDTVHDVTMDYYGKRLATASSDQAIKIIGVSNS-ASQHLATLTGHQGPVWQAAWAHPKFGSLLAS

Arabidopsis top hitse value%identityAlignment
AT2G30050.1 transducin family protein / WD-40 repeat family protein7.3e-2876Show/hide
Query:  MPVQKIESGHQDTVHDVTMDYYGKRLATASSDQAIKIIGVSNS-ASQHLATLTGHQGPVWQAAWAHPKFGSLLAS
        MP QKIE+GH+D VHDV MDYYGKR+ATASSD  IKI GVSN+  SQ LATLTGH+GPVW+ AWAHPK+GS+LAS
Subjt:  MPVQKIESGHQDTVHDVTMDYYGKRLATASSDQAIKIIGVSNS-ASQHLATLTGHQGPVWQAAWAHPKFGSLLAS

AT3G01340.1 Transducin/WD40 repeat-like superfamily protein1.6e-3082.67Show/hide
Query:  MPVQKIESGHQDTVHDVTMDYYGKRLATASSDQAIKIIGVSNS-ASQHLATLTGHQGPVWQAAWAHPKFGSLLAS
        MP QKIE+GH DT+HDV MDYYGKR+ATASSD  IKI GVSNS  SQHLATLTGH+GPVWQ AWAHPKFGSLLAS
Subjt:  MPVQKIESGHQDTVHDVTMDYYGKRLATASSDQAIKIIGVSNS-ASQHLATLTGHQGPVWQAAWAHPKFGSLLAS

AT3G01340.2 Transducin/WD40 repeat-like superfamily protein1.6e-3082.67Show/hide
Query:  MPVQKIESGHQDTVHDVTMDYYGKRLATASSDQAIKIIGVSNS-ASQHLATLTGHQGPVWQAAWAHPKFGSLLAS
        MP QKIE+GH DT+HDV MDYYGKR+ATASSD  IKI GVSNS  SQHLATLTGH+GPVWQ AWAHPKFGSLLAS
Subjt:  MPVQKIESGHQDTVHDVTMDYYGKRLATASSDQAIKIIGVSNS-ASQHLATLTGHQGPVWQAAWAHPKFGSLLAS


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCCTGTTCAGAAGATAGAAAGTGGTCACCAGGACACCGTCCATGATGTTACGATGGATTATTATGGCAAGCGCCTTGCTACAGCTTCTTCTGACCAGGCCATTAAGAT
AATTGGAGTCAGTAACTCAGCATCTCAACATCTAGCCACGCTTACTGGTCACCAAGGACCAGTTTGGCAGGCTGCTTGGGCGCACCCGAAATTCGGGTCGTTGCTAGCTT
CGTGGTTCTTACGATGGACGAGTGATTATATGGAAGGAGGGCAATCAGAACGAGTGGAGTCAAGCCCATGTTTTTGA
mRNA sequenceShow/hide mRNA sequence
ATGCCTGTTCAGAAGATAGAAAGTGGTCACCAGGACACCGTCCATGATGTTACGATGGATTATTATGGCAAGCGCCTTGCTACAGCTTCTTCTGACCAGGCCATTAAGAT
AATTGGAGTCAGTAACTCAGCATCTCAACATCTAGCCACGCTTACTGGTCACCAAGGACCAGTTTGGCAGGCTGCTTGGGCGCACCCGAAATTCGGGTCGTTGCTAGCTT
CGTGGTTCTTACGATGGACGAGTGATTATATGGAAGGAGGGCAATCAGAACGAGTGGAGTCAAGCCCATGTTTTTGA
Protein sequenceShow/hide protein sequence
MPVQKIESGHQDTVHDVTMDYYGKRLATASSDQAIKIIGVSNSASQHLATLTGHQGPVWQAAWAHPKFGSLLASWFLRWTSDYMEGGQSERVESSPCF