; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

CmoCh17G007450 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh17G007450
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
Descriptionprotein transport protein SEC13 homolog B-like
Genome locationCmo_Chr17:7372046..7372612
RNA-Seq ExpressionCmoCh17G007450
SyntenyCmoCh17G007450
Gene Ontology termsGO:0006606 - protein import into nucleus (biological process)
GO:0090114 - COPII-coated vesicle budding (biological process)
GO:0030127 - COPII vesicle coat (cellular component)
GO:0031080 - nuclear pore outer ring (cellular component)
GO:0005198 - structural molecule activity (molecular function)
GO:0005515 - protein binding (molecular function)
InterPro domainsIPR001680 - WD40 repeat
IPR015943 - WD40/YVTN repeat-like-containing domain superfamily
IPR036322 - WD40-repeat-containing domain superfamily
IPR037363 - Sec13/Seh1 family


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG7014054.1 Protein transport protein SEC13-like B, partial [Cucurbita argyrosperma subsp. argyrosperma]1.5e-6397.41Show/hide
Query:  TLKVWKPYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASASQDGQVIIWTVVWEGDQWEGKILNDFKTPVWRVSWSMTGNILAVADGNNNVTLW
        T+KVWKPYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASASQDGQVIIWTV  EGDQWEGKILNDFKTPVWRVSWSMTGNILAVADGNNNVTLW
Subjt:  TLKVWKPYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASASQDGQVIIWTVVWEGDQWEGKILNDFKTPVWRVSWSMTGNILAVADGNNNVTLW

Query:  KEDVDGDWQQVTTVEP
        KEDVDGDWQQVTTVEP
Subjt:  KEDVDGDWQQVTTVEP

XP_008462440.1 PREDICTED: protein transport protein SEC13 homolog B-like [Cucumis melo]1.5e-6093.1Show/hide
Query:  TLKVWKPYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASASQDGQVIIWTVVWEGDQWEGKILNDFKTPVWRVSWSMTGNILAVADGNNNVTLW
        T+KVWKPYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASASQDG+VIIWTV  EGDQWEGKILNDFKT VWRVSWS+TGNILAVADGNN+VTLW
Subjt:  TLKVWKPYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASASQDGQVIIWTVVWEGDQWEGKILNDFKTPVWRVSWSMTGNILAVADGNNNVTLW

Query:  KEDVDGDWQQVTTVEP
        KE VDGDWQQVTTVEP
Subjt:  KEDVDGDWQQVTTVEP

XP_022152847.1 protein transport protein SEC13 homolog B-like [Momordica charantia]3.1e-6193.1Show/hide
Query:  TLKVWKPYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASASQDGQVIIWTVVWEGDQWEGKILNDFKTPVWRVSWSMTGNILAVADGNNNVTLW
        T+KVWKPYNG+WKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASASQDG+VIIWTV  EGDQWEGKILNDFKTPVWRVSWS+TGNILAVADGNNNV+LW
Subjt:  TLKVWKPYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASASQDGQVIIWTVVWEGDQWEGKILNDFKTPVWRVSWSMTGNILAVADGNNNVTLW

Query:  KEDVDGDWQQVTTVEP
        KE VDGDWQQVTTVEP
Subjt:  KEDVDGDWQQVTTVEP

XP_023548958.1 protein transport protein SEC13 homolog B-like [Cucurbita pepo subsp. pepo]1.5e-6397.41Show/hide
Query:  TLKVWKPYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASASQDGQVIIWTVVWEGDQWEGKILNDFKTPVWRVSWSMTGNILAVADGNNNVTLW
        T+KVWKPYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASASQDGQVIIWTV  EGDQWEGKILNDFKTPVWRVSWSMTGNILAVADGNNNVTLW
Subjt:  TLKVWKPYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASASQDGQVIIWTVVWEGDQWEGKILNDFKTPVWRVSWSMTGNILAVADGNNNVTLW

Query:  KEDVDGDWQQVTTVEP
        KEDVDGDWQQVTTVEP
Subjt:  KEDVDGDWQQVTTVEP

XP_038900239.1 protein transport protein SEC13 homolog B-like [Benincasa hispida]1.8e-6193.97Show/hide
Query:  TLKVWKPYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASASQDGQVIIWTVVWEGDQWEGKILNDFKTPVWRVSWSMTGNILAVADGNNNVTLW
        T+KVWKPYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASASQDG+VIIWTV  EGDQWEGKILNDFKTPVWRVSWS+TGNILAVADGNN+VTLW
Subjt:  TLKVWKPYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASASQDGQVIIWTVVWEGDQWEGKILNDFKTPVWRVSWSMTGNILAVADGNNNVTLW

Query:  KEDVDGDWQQVTTVEP
        KE VDGDWQQVTTVEP
Subjt:  KEDVDGDWQQVTTVEP

TrEMBL top hitse value%identityAlignment
A0A0A0KCU3 WD_REPEATS_REGION domain-containing protein2.8e-6092.24Show/hide
Query:  TLKVWKPYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASASQDGQVIIWTVVWEGDQWEGKILNDFKTPVWRVSWSMTGNILAVADGNNNVTLW
        T+KVWKPYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASASQDG+VIIWTV  EGDQWEGKIL+DFKT VWRVSWS+TGNILAVADGNN+VTLW
Subjt:  TLKVWKPYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASASQDGQVIIWTVVWEGDQWEGKILNDFKTPVWRVSWSMTGNILAVADGNNNVTLW

Query:  KEDVDGDWQQVTTVEP
        KE VDGDWQQVTTVEP
Subjt:  KEDVDGDWQQVTTVEP

A0A1S3CHH1 protein transport protein SEC13 homolog B-like7.4e-6193.1Show/hide
Query:  TLKVWKPYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASASQDGQVIIWTVVWEGDQWEGKILNDFKTPVWRVSWSMTGNILAVADGNNNVTLW
        T+KVWKPYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASASQDG+VIIWTV  EGDQWEGKILNDFKT VWRVSWS+TGNILAVADGNN+VTLW
Subjt:  TLKVWKPYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASASQDGQVIIWTVVWEGDQWEGKILNDFKTPVWRVSWSMTGNILAVADGNNNVTLW

Query:  KEDVDGDWQQVTTVEP
        KE VDGDWQQVTTVEP
Subjt:  KEDVDGDWQQVTTVEP

A0A2I4HEE1 protein transport protein SEC13 homolog B4.8e-6092.24Show/hide
Query:  TLKVWKPYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASASQDGQVIIWTVVWEGDQWEGKILNDFKTPVWRVSWSMTGNILAVADGNNNVTLW
        T+KVWK YNG WKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASASQDG+VIIWTVV EGDQWEGK+LNDFKTPVWRVSWS+TGNILAVADGNNNVTLW
Subjt:  TLKVWKPYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASASQDGQVIIWTVVWEGDQWEGKILNDFKTPVWRVSWSMTGNILAVADGNNNVTLW

Query:  KEDVDGDWQQVTTVEP
        KE VDG+WQQVTTVEP
Subjt:  KEDVDGDWQQVTTVEP

A0A5A7UA12 Protein transport protein SEC13-like protein B-like7.4e-6193.1Show/hide
Query:  TLKVWKPYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASASQDGQVIIWTVVWEGDQWEGKILNDFKTPVWRVSWSMTGNILAVADGNNNVTLW
        T+KVWKPYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASASQDG+VIIWTV  EGDQWEGKILNDFKT VWRVSWS+TGNILAVADGNN+VTLW
Subjt:  TLKVWKPYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASASQDGQVIIWTVVWEGDQWEGKILNDFKTPVWRVSWSMTGNILAVADGNNNVTLW

Query:  KEDVDGDWQQVTTVEP
        KE VDGDWQQVTTVEP
Subjt:  KEDVDGDWQQVTTVEP

A0A6J1DHD2 protein transport protein SEC13 homolog B-like1.5e-6193.1Show/hide
Query:  TLKVWKPYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASASQDGQVIIWTVVWEGDQWEGKILNDFKTPVWRVSWSMTGNILAVADGNNNVTLW
        T+KVWKPYNG+WKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASASQDG+VIIWTV  EGDQWEGKILNDFKTPVWRVSWS+TGNILAVADGNNNV+LW
Subjt:  TLKVWKPYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASASQDGQVIIWTVVWEGDQWEGKILNDFKTPVWRVSWSMTGNILAVADGNNNVTLW

Query:  KEDVDGDWQQVTTVEP
        KE VDGDWQQVTTVEP
Subjt:  KEDVDGDWQQVTTVEP

SwissProt top hitse value%identityAlignment
O64740 Protein transport protein SEC13 homolog B5.3e-5681.9Show/hide
Query:  TLKVWKPYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASASQDGQVIIWTVVWEGDQWEGKILNDFKTPVWRVSWSMTGNILAVADGNNNVTLW
        T+KVWK  NG WKMDCFPALQ HTDWVRDVAWAPNLGLPKSTIAS SQDG+VIIWTV  EG+QWEGK+L DF TPVWRVSWS+TGN+LAV+DGNNNVT+W
Subjt:  TLKVWKPYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASASQDGQVIIWTVVWEGDQWEGKILNDFKTPVWRVSWSMTGNILAVADGNNNVTLW

Query:  KEDVDGDWQQVTTVEP
        KE VDG+W+QVT VEP
Subjt:  KEDVDGDWQQVTTVEP

Q3ZCC9 Protein SEC13 homolog1.0e-3054.78Show/hide
Query:  LKVWK-PYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASASQDGQVIIWTV-VWEGDQWEGKILNDFKTPVWRVSWSMTGNILAVADGNNNVTL
        +K+WK   +G WK +    L+ H+DWVRDVAWAP++GLP STIAS SQDG+V +WT     G+ W  K+L+ F   VW VSWS+T NILAV+ G+N VTL
Subjt:  LKVWK-PYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASASQDGQVIIWTV-VWEGDQWEGKILNDFKTPVWRVSWSMTGNILAVADGNNNVTL

Query:  WKEDVDGDWQQVTTV
        WKE VDG W  ++ V
Subjt:  WKEDVDGDWQQVTTV

Q5XFW8 Protein SEC13 homolog1.3e-3054.78Show/hide
Query:  LKVWK-PYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASASQDGQVIIWTV-VWEGDQWEGKILNDFKTPVWRVSWSMTGNILAVADGNNNVTL
        +K+W+   +G WK +    L+ H+DWVRDVAWAP++GLP STIAS SQDG+V IWT     G+ W  K+L+ F   VW VSWS+T NILAV+ G+N VTL
Subjt:  LKVWK-PYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASASQDGQVIIWTV-VWEGDQWEGKILNDFKTPVWRVSWSMTGNILAVADGNNNVTL

Query:  WKEDVDGDWQQVTTV
        WKE VDG W  ++ V
Subjt:  WKEDVDGDWQQVTTV

Q9D1M0 Protein SEC13 homolog1.3e-3054.78Show/hide
Query:  LKVWK-PYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASASQDGQVIIWTV-VWEGDQWEGKILNDFKTPVWRVSWSMTGNILAVADGNNNVTL
        +K+W+   +G WK +    L+ H+DWVRDVAWAP++GLP STIAS SQDG+V IWT     G+ W  K+L+ F   VW VSWS+T NILAV+ G+N VTL
Subjt:  LKVWK-PYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASASQDGQVIIWTV-VWEGDQWEGKILNDFKTPVWRVSWSMTGNILAVADGNNNVTL

Query:  WKEDVDGDWQQVTTV
        WKE VDG W  ++ V
Subjt:  WKEDVDGDWQQVTTV

Q9SRI1 Protein transport protein SEC13 homolog A4.5e-5579.31Show/hide
Query:  TLKVWKPYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASASQDGQVIIWTVVWEGDQWEGKILNDFKTPVWRVSWSMTGNILAVADGNNNVTLW
        T+KVWK  NG WKMDCFPAL  HTDWVRDVAWAPNLGLPKSTIAS S+DG+VIIWT+  EG+QWEG +L DFKTPVWRVSWS+TGN+LAV+DGNNNVT+W
Subjt:  TLKVWKPYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASASQDGQVIIWTVVWEGDQWEGKILNDFKTPVWRVSWSMTGNILAVADGNNNVTLW

Query:  KEDVDGDWQQVTTVEP
        KE VDG+W+QVT VEP
Subjt:  KEDVDGDWQQVTTVEP

Arabidopsis top hitse value%identityAlignment
AT1G64350.1 Transducin/WD40 repeat-like superfamily protein2.6e-1033.33Show/hide
Query:  DWVRDVAWAPNLGLPKSTIASASQDGQVIIWTVVWEGDQWEGKI-------LNDFKTPVWRVSWSMTGNILAVADGNNNVTLWKEDVDGDWQQVTTVEP
        D V  ++WAPN+G P   +A A+  G + IW V    D  EG++       L+  +  VW++ W M+G  LA    +  V LW+ +++G+W +  T+EP
Subjt:  DWVRDVAWAPNLGLPKSTIASASQDGQVIIWTVVWEGDQWEGKI-------LNDFKTPVWRVSWSMTGNILAVADGNNNVTLWKEDVDGDWQQVTTVEP

AT2G30050.1 transducin family protein / WD-40 repeat family protein3.8e-5781.9Show/hide
Query:  TLKVWKPYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASASQDGQVIIWTVVWEGDQWEGKILNDFKTPVWRVSWSMTGNILAVADGNNNVTLW
        T+KVWK  NG WKMDCFPALQ HTDWVRDVAWAPNLGLPKSTIAS SQDG+VIIWTV  EG+QWEGK+L DF TPVWRVSWS+TGN+LAV+DGNNNVT+W
Subjt:  TLKVWKPYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASASQDGQVIIWTVVWEGDQWEGKILNDFKTPVWRVSWSMTGNILAVADGNNNVTLW

Query:  KEDVDGDWQQVTTVEP
        KE VDG+W+QVT VEP
Subjt:  KEDVDGDWQQVTTVEP

AT3G01340.1 Transducin/WD40 repeat-like superfamily protein3.2e-5679.31Show/hide
Query:  TLKVWKPYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASASQDGQVIIWTVVWEGDQWEGKILNDFKTPVWRVSWSMTGNILAVADGNNNVTLW
        T+KVWK  NG WKMDCFPAL  HTDWVRDVAWAPNLGLPKSTIAS S+DG+VIIWT+  EG+QWEG +L DFKTPVWRVSWS+TGN+LAV+DGNNNVT+W
Subjt:  TLKVWKPYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASASQDGQVIIWTVVWEGDQWEGKILNDFKTPVWRVSWSMTGNILAVADGNNNVTLW

Query:  KEDVDGDWQQVTTVEP
        KE VDG+W+QVT VEP
Subjt:  KEDVDGDWQQVTTVEP

AT3G01340.2 Transducin/WD40 repeat-like superfamily protein3.2e-5679.31Show/hide
Query:  TLKVWKPYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASASQDGQVIIWTVVWEGDQWEGKILNDFKTPVWRVSWSMTGNILAVADGNNNVTLW
        T+KVWK  NG WKMDCFPAL  HTDWVRDVAWAPNLGLPKSTIAS S+DG+VIIWT+  EG+QWEG +L DFKTPVWRVSWS+TGN+LAV+DGNNNVT+W
Subjt:  TLKVWKPYNGIWKMDCFPALQMHTDWVRDVAWAPNLGLPKSTIASASQDGQVIIWTVVWEGDQWEGKILNDFKTPVWRVSWSMTGNILAVADGNNNVTLW

Query:  KEDVDGDWQQVTTVEP
        KE VDG+W+QVT VEP
Subjt:  KEDVDGDWQQVTTVEP


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAATTGGGTCTATGTTTGGCATGTGGTTCCTCTGATGGGAATATTTCAGTATTCACTACAAGGCAGGATGGTGGTTGGGATACATCAAGTATTGACCAAGCTC
ATCCACTTGGTGTCACATCGGTCTCATGGGCCCCTTCATCTGCACCAGGTGCTCTTGAAGGTTCTGGCTTTGTTGATCCTGTTCATAAGCTTTGCTCTGGTGGTT
GTGATAACACTGAAGGTTTGGAAACCGTATAATGGAATTTGGAAGATGGACTGTTTCCCTGCACTTCAGATGCATACTGATTGGGTTAGGGACGTCGCATGGGCA
CCAAACCTCGGGCTACCGAAATCTACTATTGCAAGTGCTTCTCAGGATGGACAGGTTATCATATGGACGGTAGTCTGGGAAGGGGATCAATGGGAAGGGAAGATA
TTGAATGATTTCAAAACTCCTGTCTGGAGGGTCTCATGGTCTATGACTGGGAACATCTTGGCTGTGGCGGATGGGAACAACAATGTTACCTTGTGGAAGGAGGAT
GTTGATGGGGACTGGCAACAGGTGACGACTGTTGAGCCATAG
mRNA sequenceShow/hide mRNA sequence
ATGAATTGGGTCTATGTTTGGCATGTGGTTCCTCTGATGGGAATATTTCAGTATTCACTACAAGGCAGGATGGTGGTTGGGATACATCAAGTATTGACCAAGCTC
ATCCACTTGGTGTCACATCGGTCTCATGGGCCCCTTCATCTGCACCAGGTGCTCTTGAAGGTTCTGGCTTTGTTGATCCTGTTCATAAGCTTTGCTCTGGTGGTT
GTGATAACACTGAAGGTTTGGAAACCGTATAATGGAATTTGGAAGATGGACTGTTTCCCTGCACTTCAGATGCATACTGATTGGGTTAGGGACGTCGCATGGGCA
CCAAACCTCGGGCTACCGAAATCTACTATTGCAAGTGCTTCTCAGGATGGACAGGTTATCATATGGACGGTAGTCTGGGAAGGGGATCAATGGGAAGGGAAGATA
TTGAATGATTTCAAAACTCCTGTCTGGAGGGTCTCATGGTCTATGACTGGGAACATCTTGGCTGTGGCGGATGGGAACAACAATGTTACCTTGTGGAAGGAGGAT
GTTGATGGGGACTGGCAACAGGTGACGACTGTTGAGCCATAG
Protein sequenceShow/hide protein sequence
MNWVYVWHVVPLMGIFQYSLQGRMVVGIHQVLTKLIHLVSHRSHGPLHLHQVLLKVLALLILFISFALVVVITLKVWKPYNGIWKMDCFPALQMHTDWVRDVAWA
PNLGLPKSTIASASQDGQVIIWTVVWEGDQWEGKILNDFKTPVWRVSWSMTGNILAVADGNNNVTLWKEDVDGDWQQVTTVEP