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CmoCh17G007660 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh17G007660
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
DescriptionDynein light chain
Genome locationCmo_Chr17:7459492..7460215
RNA-Seq ExpressionCmoCh17G007660
SyntenyCmoCh17G007660
Gene Ontology termsGO:0007017 - microtubule-based process (biological process)
GO:0050790 - regulation of catalytic activity (biological process)
GO:0005737 - cytoplasm (cellular component)
GO:0005874 - microtubule (cellular component)
GO:0030286 - dynein complex (cellular component)
GO:0005085 - guanyl-nucleotide exchange factor activity (molecular function)
GO:0045505 - dynein intermediate chain binding (molecular function)
GO:0051959 - dynein light intermediate chain binding (molecular function)
InterPro domainsIPR001372 - Dynein light chain, type 1/2
IPR037177 - Dynein light chain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6575532.1 hypothetical protein SDJN03_26171, partial [Cucurbita argyrosperma subsp. sororia]1.8e-3385.56Show/hide
Query:  MLEGKALVQDTDMPGKMQIQAMDAASQALDRYD-------------DFDDRYGSGWQCVVGSNFGCFFTHSKGSFIYFKLETLNFLIFKG
        MLEGKALVQDTDMPGKMQIQAMDAASQALDRYD             DFDDRYGSGWQCVVGSNFGCFFTHSKGSFIYFKLETLNFLIFKG
Subjt:  MLEGKALVQDTDMPGKMQIQAMDAASQALDRYD-------------DFDDRYGSGWQCVVGSNFGCFFTHSKGSFIYFKLETLNFLIFKG

XP_022953777.1 dynein light chain LC6, flagellar outer arm-like isoform X1 [Cucurbita moschata]1.4e-4688.18Show/hide
Query:  MLEGKALVQDTDMPGKMQIQAMDAASQALDRYD-------------DFDDRYGSGWQCVVGSNFGCFFTHSKGSFIYFKLETLNFLIFKGRFREFEYHCG
        MLEGKALVQDTDMPGKMQIQAMDAASQALDRYD             DFDDRYGSGWQCVVGSNFGCFFTHSKGSFIYFKLETLNFLIFKGRFREFEYHCG
Subjt:  MLEGKALVQDTDMPGKMQIQAMDAASQALDRYD-------------DFDDRYGSGWQCVVGSNFGCFFTHSKGSFIYFKLETLNFLIFKGRFREFEYHCG

Query:  LFGCLMFKIL
        LFGCLMFKIL
Subjt:  LFGCLMFKIL

XP_022953781.1 dynein light chain LC6, flagellar outer arm-like isoform X2 [Cucurbita moschata]1.2e-3778.18Show/hide
Query:  MLEGKALVQDTDMPGKMQIQAMDAASQALDRYD-------------DFDDRYGSGWQCVVGSNFGCFFTHSKGSFIYFKLETLNFLIFKGRFREFEYHCG
        MLEGKALVQDTDMPGKMQIQAMDAASQALDRYD             DFDDRYGSGWQCVVGSNFGCFFTHSKGSF           IFKGRFREFEYHCG
Subjt:  MLEGKALVQDTDMPGKMQIQAMDAASQALDRYD-------------DFDDRYGSGWQCVVGSNFGCFFTHSKGSFIYFKLETLNFLIFKGRFREFEYHCG

Query:  LFGCLMFKIL
        LFGCLMFKIL
Subjt:  LFGCLMFKIL

XP_022992454.1 dynein light chain LC6, flagellar outer arm-like [Cucurbita maxima]1.6e-3283.33Show/hide
Query:  MLEGKALVQDTDMPGKMQIQAMDAASQALDRYD-------------DFDDRYGSGWQCVVGSNFGCFFTHSKGSFIYFKLETLNFLIFKG
        MLEGKALVQDTDMPGKMQIQAMDAAS+ALDRYD             DFD+RYGSGWQCVVGSNFGCFFTHSKGSFIYFKLETLNFLIFKG
Subjt:  MLEGKALVQDTDMPGKMQIQAMDAASQALDRYD-------------DFDDRYGSGWQCVVGSNFGCFFTHSKGSFIYFKLETLNFLIFKG

XP_038897874.1 dynein light chain LC6, flagellar outer arm-like [Benincasa hispida]1.7e-3181.11Show/hide
Query:  MLEGKALVQDTDMPGKMQIQAMDAASQALDRYD-------------DFDDRYGSGWQCVVGSNFGCFFTHSKGSFIYFKLETLNFLIFKG
        MLEGKAL+QDTDMPGKMQIQAMDAAS+ALD YD             DFD+RYGSGWQCVVGSNFGCFFTHSKGSFIYFKLETLNFLIFKG
Subjt:  MLEGKALVQDTDMPGKMQIQAMDAASQALDRYD-------------DFDDRYGSGWQCVVGSNFGCFFTHSKGSFIYFKLETLNFLIFKG

TrEMBL top hitse value%identityAlignment
A0A0A0K947 Dynein light chain1.4e-3181.11Show/hide
Query:  MLEGKALVQDTDMPGKMQIQAMDAASQALDRYD-------------DFDDRYGSGWQCVVGSNFGCFFTHSKGSFIYFKLETLNFLIFKG
        MLEGKALVQDTDMPGKMQIQAMDAAS+ALD YD             DFD++YGSGWQCVVGSNFGCFFTHSKGSFIYFKLETLNFLIFKG
Subjt:  MLEGKALVQDTDMPGKMQIQAMDAASQALDRYD-------------DFDDRYGSGWQCVVGSNFGCFFTHSKGSFIYFKLETLNFLIFKG

A0A5A7UW48 Dynein light chain1.4e-3181.11Show/hide
Query:  MLEGKALVQDTDMPGKMQIQAMDAASQALDRYD-------------DFDDRYGSGWQCVVGSNFGCFFTHSKGSFIYFKLETLNFLIFKG
        MLEGKALVQDTDMPGKMQIQAMDAAS+ALD YD             DFD++YGSGWQCVVGSNFGCFFTHSKGSFIYFKLETLNFLIFKG
Subjt:  MLEGKALVQDTDMPGKMQIQAMDAASQALDRYD-------------DFDDRYGSGWQCVVGSNFGCFFTHSKGSFIYFKLETLNFLIFKG

A0A6J1GP16 Dynein light chain5.9e-3878.18Show/hide
Query:  MLEGKALVQDTDMPGKMQIQAMDAASQALDRYD-------------DFDDRYGSGWQCVVGSNFGCFFTHSKGSFIYFKLETLNFLIFKGRFREFEYHCG
        MLEGKALVQDTDMPGKMQIQAMDAASQALDRYD             DFDDRYGSGWQCVVGSNFGCFFTHSKGSF           IFKGRFREFEYHCG
Subjt:  MLEGKALVQDTDMPGKMQIQAMDAASQALDRYD-------------DFDDRYGSGWQCVVGSNFGCFFTHSKGSFIYFKLETLNFLIFKGRFREFEYHCG

Query:  LFGCLMFKIL
        LFGCLMFKIL
Subjt:  LFGCLMFKIL

A0A6J1GP96 Dynein light chain7.0e-4788.18Show/hide
Query:  MLEGKALVQDTDMPGKMQIQAMDAASQALDRYD-------------DFDDRYGSGWQCVVGSNFGCFFTHSKGSFIYFKLETLNFLIFKGRFREFEYHCG
        MLEGKALVQDTDMPGKMQIQAMDAASQALDRYD             DFDDRYGSGWQCVVGSNFGCFFTHSKGSFIYFKLETLNFLIFKGRFREFEYHCG
Subjt:  MLEGKALVQDTDMPGKMQIQAMDAASQALDRYD-------------DFDDRYGSGWQCVVGSNFGCFFTHSKGSFIYFKLETLNFLIFKGRFREFEYHCG

Query:  LFGCLMFKIL
        LFGCLMFKIL
Subjt:  LFGCLMFKIL

A0A6J1JVQ9 Dynein light chain7.5e-3383.33Show/hide
Query:  MLEGKALVQDTDMPGKMQIQAMDAASQALDRYD-------------DFDDRYGSGWQCVVGSNFGCFFTHSKGSFIYFKLETLNFLIFKG
        MLEGKALVQDTDMPGKMQIQAMDAAS+ALDRYD             DFD+RYGSGWQCVVGSNFGCFFTHSKGSFIYFKLETLNFLIFKG
Subjt:  MLEGKALVQDTDMPGKMQIQAMDAASQALDRYD-------------DFDDRYGSGWQCVVGSNFGCFFTHSKGSFIYFKLETLNFLIFKG

SwissProt top hitse value%identityAlignment
O02414 Dynein light chain LC6, flagellar outer arm2.7e-1140.23Show/hide
Query:  MLEGKALVQDTDMPGKMQIQAMDAASQALDRYD-----------DFDDRYGSGWQCVVGSNFGCFFTHSKGSFIYFKLETLNFLIFK
        M E KA++++ DMP  MQ  A+D A+QAL++++           +FD +Y   W C+VG NFG + TH    FIYF L  +  L+FK
Subjt:  MLEGKALVQDTDMPGKMQIQAMDAASQALDRYD-----------DFDDRYGSGWQCVVGSNFGCFFTHSKGSFIYFKLETLNFLIFK

O96860 Dynein light chain 2, cytoplasmic7.8e-1139.08Show/hide
Query:  MLEGKALVQDTDMPGKMQIQAMDAASQALDRYD-----------DFDDRYGSGWQCVVGSNFGCFFTHSKGSFIYFKLETLNFLIFK
        M + KA++++ DM  +MQ  A+D A+QAL++Y+           +FD +Y   W C+VG NFG + TH    FIYF L  +  L+FK
Subjt:  MLEGKALVQDTDMPGKMQIQAMDAASQALDRYD-----------DFDDRYGSGWQCVVGSNFGCFFTHSKGSFIYFKLETLNFLIFK

Q22799 Dynein light chain 1, cytoplasmic4.6e-1139.08Show/hide
Query:  MLEGKALVQDTDMPGKMQIQAMDAASQALDRYD-----------DFDDRYGSGWQCVVGSNFGCFFTHSKGSFIYFKLETLNFLIFK
        M++ KA++++ DM   MQ  A+D A+QAL++Y+           +FD +Y   W C+VG NFG + TH    FIYF L  +  L+FK
Subjt:  MLEGKALVQDTDMPGKMQIQAMDAASQALDRYD-----------DFDDRYGSGWQCVVGSNFGCFFTHSKGSFIYFKLETLNFLIFK

Q24117 Dynein light chain 1, cytoplasmic7.8e-1139.08Show/hide
Query:  MLEGKALVQDTDMPGKMQIQAMDAASQALDRYD-----------DFDDRYGSGWQCVVGSNFGCFFTHSKGSFIYFKLETLNFLIFK
        M + KA++++ DM  +MQ  A+D A+QAL++Y+           +FD +Y   W C+VG NFG + TH    FIYF L  +  L+FK
Subjt:  MLEGKALVQDTDMPGKMQIQAMDAASQALDRYD-----------DFDDRYGSGWQCVVGSNFGCFFTHSKGSFIYFKLETLNFLIFK

Q3MHR3 Dynein light chain 2, cytoplasmic2.3e-1037.93Show/hide
Query:  MLEGKALVQDTDMPGKMQIQAMDAASQALDRYD-----------DFDDRYGSGWQCVVGSNFGCFFTHSKGSFIYFKLETLNFLIFK
        M + KA++++ DM   MQ  A+D A+QA+++Y+           +FD +Y   W C+VG NFG + TH    FIYF L  +  L+FK
Subjt:  MLEGKALVQDTDMPGKMQIQAMDAASQALDRYD-----------DFDDRYGSGWQCVVGSNFGCFFTHSKGSFIYFKLETLNFLIFK

Arabidopsis top hitse value%identityAlignment
AT1G52240.1 RHO guanyl-nucleotide exchange factor 113.2e-1259.32Show/hide
Query:  MLEGKALVQDTDMPGKMQIQAMDAASQALDRYD-------------DFDDRYGSGWQCV
        MLEGKA+V+D+DMP KMQ+QAM  ASQALD +D             +FD+RYGSGWQCV
Subjt:  MLEGKALVQDTDMPGKMQIQAMDAASQALDRYD-------------DFDDRYGSGWQCV

AT1G52240.2 RHO guanyl-nucleotide exchange factor 111.0e-2970Show/hide
Query:  MLEGKALVQDTDMPGKMQIQAMDAASQALDRYD-------------DFDDRYGSGWQCVVGSNFGCFFTHSKGSFIYFKLETLNFLIFKG
        MLEGKA+V+D+DMP KMQ+QAM  ASQALD +D             +FD+RYGSGWQCVVGSNFGCFFTHSKG+FIYF+LETL FLIFKG
Subjt:  MLEGKALVQDTDMPGKMQIQAMDAASQALDRYD-------------DFDDRYGSGWQCVVGSNFGCFFTHSKGSFIYFKLETLNFLIFKG

AT3G16120.1 Dynein light chain type 1 family protein1.9e-2867.78Show/hide
Query:  MLEGKALVQDTDMPGKMQIQAMDAASQALDRYD-------------DFDDRYGSGWQCVVGSNFGCFFTHSKGSFIYFKLETLNFLIFKG
        MLEGKA V++TDMP KMQ+QAM  ASQ+LD +D             +FD+RYGSGWQCVVG+NFGCFFTHSKG+FIYF L TLNFLIFKG
Subjt:  MLEGKALVQDTDMPGKMQIQAMDAASQALDRYD-------------DFDDRYGSGWQCVVGSNFGCFFTHSKGSFIYFKLETLNFLIFKG

AT4G27360.1 Dynein light chain type 1 family protein4.4e-1746.81Show/hide
Query:  MLEGKALVQDTDMPGKMQIQAMDAASQALDRYD-------------DFDDRYGSGWQCVVGSNFGCFFTHSKGSFIYFKLETLNFLIFKGRFRE
        MLEGKA++ DTDM   M+  A+  AS+ALD +D             +FD  YGSGWQC+VG++FG F TH  G FI+F + +L  L+FKG   E
Subjt:  MLEGKALVQDTDMPGKMQIQAMDAASQALDRYD-------------DFDDRYGSGWQCVVGSNFGCFFTHSKGSFIYFKLETLNFLIFKGRFRE

AT5G20110.1 Dynein light chain type 1 family protein7.2e-1241.38Show/hide
Query:  DMPGKMQIQAMDAASQALDRYD-------------DFDDRYGSGWQCVVGSNFGCFFTHSKGSFIYFKLETLNFLIFKGRFREFEYH
        DMPG MQ  A   A   LD  +             +FD  YG  W C+VGS+FG F THS G FIYF ++ L  L+FK + R    H
Subjt:  DMPGKMQIQAMDAASQALDRYD-------------DFDDRYGSGWQCVVGSNFGCFFTHSKGSFIYFKLETLNFLIFKGRFREFEYH


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTTGGAAGGCAAAGCTTTGGTACAGGATACAGATATGCCTGGCAAGATGCAGATCCAAGCCATGGACGCTGCTTCTCAAGCTCTGGATCGCTATGATGATTTTGACGA
CAGATATGGAAGCGGATGGCAATGTGTGGTGGGTTCAAATTTTGGTTGTTTCTTCACCCACTCCAAAGGCTCTTTCATCTACTTCAAACTGGAGACTCTTAACTTTCTCA
TCTTCAAAGGGAGATTTAGAGAGTTTGAATATCATTGTGGGTTGTTTGGATGCTTGATGTTCAAAATCCTTTAA
mRNA sequenceShow/hide mRNA sequence
ATGTTGGAAGGCAAAGCTTTGGTACAGGATACAGATATGCCTGGCAAGATGCAGATCCAAGCCATGGACGCTGCTTCTCAAGCTCTGGATCGCTATGATGATTTTGACGA
CAGATATGGAAGCGGATGGCAATGTGTGGTGGGTTCAAATTTTGGTTGTTTCTTCACCCACTCCAAAGGCTCTTTCATCTACTTCAAACTGGAGACTCTTAACTTTCTCA
TCTTCAAAGGGAGATTTAGAGAGTTTGAATATCATTGTGGGTTGTTTGGATGCTTGATGTTCAAAATCCTTTAATGCTTTTGGTGGGTATACTATGTAAATATGAACTCA
TGTGAACACAGTTCTTAATCCTTTCCAAGCATTTTCACTGCCCATTTCACTTCTCTGCCAAGATTAGCTAATTCCTGGGTTCAGACAATCAATTATAGGCAATCTCCTGG
T
Protein sequenceShow/hide protein sequence
MLEGKALVQDTDMPGKMQIQAMDAASQALDRYDDFDDRYGSGWQCVVGSNFGCFFTHSKGSFIYFKLETLNFLIFKGRFREFEYHCGLFGCLMFKIL