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CmoCh17G007890 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh17G007890
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
Descriptionthionin-like protein 2
Genome locationCmo_Chr17:7586798..7587724
RNA-Seq ExpressionCmoCh17G007890
SyntenyCmoCh17G007890
Gene Ontology termsNA
InterPro domainsIPR038975 - Thionin-like protein


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6575552.1 Thionin-like protein 2, partial [Cucurbita argyrosperma subsp. sororia]9.1e-3268.63Show/hide
Query:  MGTGSSQHLGMPDLSSNP---YCYAFCVFPCFTGPVECALCIRKCILSAQDSPMDINHLNNAYFCKLGCATSRCTRLLSNART--DGKKVEGCVDSCSRT
        MGTGSSQHLGMP+LS NP   YCYA C   C +GP+ECALCI  C++SAQDSPMDINHLNNAYFCKLGCATSRCTRLLSNART         C   C   
Subjt:  MGTGSSQHLGMPDLSSNP---YCYAFCVFPCFTGPVECALCIRKCILSAQDSPMDINHLNNAYFCKLGCATSRCTRLLSNART--DGKKVEGCVDSCSRT

Query:  CS
        C+
Subjt:  CS

KAG6575553.1 Thionin-like protein 2, partial [Cucurbita argyrosperma subsp. sororia]4.7e-2046.09Show/hide
Query:  MKSGVVIGLVLSIVMGTGSSQHLGMPDLSSNPYCYAFCVFPCFTGPVECALCIRKCILSAQDSPMDINHLNNAYFCKLGCATSRCTRLLSNARTDGKKVE
        MK+ +V  LVLS V+  G S+     +    P CY  C+  CF    +CA+CI KC++S + +PM  NH++N YFCKLGC+TSRC +LL N   + K+++
Subjt:  MKSGVVIGLVLSIVMGTGSSQHLGMPDLSSNPYCYAFCVFPCFTGPVECALCIRKCILSAQDSPMDINHLNNAYFCKLGCATSRCTRLLSNARTDGKKVE

Query:  GCVDSCSRTCSNVKN
        GCV+SCS TC+N+ N
Subjt:  GCVDSCSRTCSNVKN

KAG6575557.1 Thionin-like protein 2, partial [Cucurbita argyrosperma subsp. sororia]2.4e-3271.72Show/hide
Query:  MGTGSSQHLGMPDLSSNP---YCYAFCVFPCFTGPVECALCIRKCILSAQDSPMDINHLNNAYFCKLGCATSRCTRLLSNARTDGKKVEGCVDSCSRTC
        MGTGSSQHLGMP+LS NP   YCYA C   C +GP+ECALCI  C++SAQDSPMDINHLNNAYFCKLGCATSRCTRLLSNART G  +  C  +C   C
Subjt:  MGTGSSQHLGMPDLSSNP---YCYAFCVFPCFTGPVECALCIRKCILSAQDSPMDINHLNNAYFCKLGCATSRCTRLLSNARTDGKKVEGCVDSCSRTC

KAG6575558.1 hypothetical protein SDJN03_26197, partial [Cucurbita argyrosperma subsp. sororia]4.0e-1951.19Show/hide
Query:  PYCYAFCVFPCFTGPVECALCIRKCILSAQDSPMDINHLNNAYFCKLGCATSRCTRLLSNARTDGKKVEGCVDSCSRTCSNVKN
        P CY  C+  CF    +CA+CI KC++S + +PM  NH++N YFCKLGC+TSRC +LL N   + K+++GCV+SCS TC+N+ N
Subjt:  PYCYAFCVFPCFTGPVECALCIRKCILSAQDSPMDINHLNNAYFCKLGCATSRCTRLLSNARTDGKKVEGCVDSCSRTCSNVKN

KAG7014099.1 hypothetical protein SDJN02_24272, partial [Cucurbita argyrosperma subsp. argyrosperma]2.3e-1945.22Show/hide
Query:  MKSGVVIGLVLSIVMGTGSSQHLGMPDLSSNPYCYAFCVFPCFTGPVECALCIRKCILSAQDSPMDINHLNNAYFCKLGCATSRCTRLLSNARTDGKKVE
        MK+ +V  LVLS V+  G S+     +    P CY  C+  C     +CA+CI KC++S + +PM  NH++N YFCKLGC+TSRC +LL N   + K+++
Subjt:  MKSGVVIGLVLSIVMGTGSSQHLGMPDLSSNPYCYAFCVFPCFTGPVECALCIRKCILSAQDSPMDINHLNNAYFCKLGCATSRCTRLLSNARTDGKKVE

Query:  GCVDSCSRTCSNVKN
        GCV+SCS TC+N+ N
Subjt:  GCVDSCSRTCSNVKN

TrEMBL top hitse value%identityAlignment
A0A1R3H8D4 Peptidase C13, legumain1.3e-1043.48Show/hide
Query:  DLSSNPY--CYAFCVFPCF---TGPVECAL-CIRKCILSAQ-DSPMDINHLNNAYFCKLGCATSRCTRLLSNARTDGKKVEGCVDSCSRTCS
        D+  N +  CYA C   C+   T P  CA+ C+ KCI   +  +P+   H    Y+C LGCATS C  L +N    G+KV  CVDSCSRTC+
Subjt:  DLSSNPY--CYAFCVFPCF---TGPVECAL-CIRKCILSAQ-DSPMDINHLNNAYFCKLGCATSRCTRLLSNARTDGKKVEGCVDSCSRTCS

A0A5E4GD16 PREDICTED: thionin3.0e-1237.29Show/hide
Query:  MKSGVVIGLVLSIVMGTGSSQHLGMPDLSSNPYCYAFCVFPCFT---GPVECAL-CIRKCILSAQDSPMDINHLNNAYFCKLGCATSRCTRLLSNARTDG
        ++  V++ LVL +VMG  ++Q   +        CY  C   C      P++C + C++KCIL+ +  P D +  N+ +FCKLGCATS CT + +    + 
Subjt:  MKSGVVIGLVLSIVMGTGSSQHLGMPDLSSNPYCYAFCVFPCFT---GPVECAL-CIRKCILSAQDSPMDINHLNNAYFCKLGCATSRCTRLLSNARTDG

Query:  KKVEGCVDSCSRTCSNVK
        +KV+ CVDSCS TC+N +
Subjt:  KKVEGCVDSCSRTCSNVK

A0A6J1KDK0 thionin-like protein 23.5e-1344.74Show/hide
Query:  MKSGVVIGLVLSIVMGTGSSQHLGMPDLSSNPYCYAFCVFPCFTGP-VECALCIRKCI---LSAQDSPMDINHLNNAYFCKLGCATSRCTRLLSNARTDG
        MKS VVI  +LS+V G  +         +S   CYA C   C   P V    C  KC+   L    +P D+NHL+  YFCKLGCATS CT+  +      
Subjt:  MKSGVVIGLVLSIVMGTGSSQHLGMPDLSSNPYCYAFCVFPCFTGP-VECALCIRKCI---LSAQDSPMDINHLNNAYFCKLGCATSRCTRLLSNARTDG

Query:  KKVEGCVDSCSRTC
        KKVE CV+SCSRTC
Subjt:  KKVEGCVDSCSRTC

A0A6P8CEJ2 thionin-like protein 23.6e-1038.05Show/hide
Query:  VIGLVLSIVMGTGSSQHLGMPDLSSNPYCYAFCVFPCFTGPVECAL-----CIRKCIL-SAQDSPMDINHLNNAYFCKLGCATSRCTRLLSNARTDGKKV
        ++ +VL ++MG   S       ++S P CY  C   C   P E A      C++ C++ SA  SP     ++  YFCKLGC+TS CT L +      K+V
Subjt:  VIGLVLSIVMGTGSSQHLGMPDLSSNPYCYAFCVFPCFTGPVECAL-----CIRKCIL-SAQDSPMDINHLNNAYFCKLGCATSRCTRLLSNARTDGKKV

Query:  EGCVDSCSRTCSN
         GCV+SCS  CSN
Subjt:  EGCVDSCSRTCSN

M5XBV6 Uncharacterized protein3.0e-1237.29Show/hide
Query:  MKSGVVIGLVLSIVMGTGSSQHLGMPDLSSNPYCYAFCVFPCFT---GPVECAL-CIRKCILSAQDSPMDINHLNNAYFCKLGCATSRCTRLLSNARTDG
        ++  V++ LVL +VMG  ++Q   +        CY  C   C      P++C + C++KCIL+ +  P D +  N+ +FCKLGCATS CT + +    + 
Subjt:  MKSGVVIGLVLSIVMGTGSSQHLGMPDLSSNPYCYAFCVFPCFT---GPVECAL-CIRKCILSAQDSPMDINHLNNAYFCKLGCATSRCTRLLSNARTDG

Query:  KKVEGCVDSCSRTCSNVK
        +KV+ CVDSCS TC+N +
Subjt:  KKVEGCVDSCSRTCSNVK

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAAGTCAGGTGTTGTAATTGGTTTGGTTTTGAGCATAGTTATGGGCACCGGTAGCTCCCAACACTTGGGCATGCCAGACTTGTCGAGTAACCCATATTGCTATGCCTT
CTGCGTGTTCCCCTGCTTCACTGGCCCCGTCGAATGTGCATTATGCATAAGAAAATGCATATTATCTGCCCAAGACTCCCCCATGGATATCAATCACTTAAACAATGCTT
ACTTTTGCAAGCTCGGGTGTGCCACTTCTCGCTGCACTAGGCTCCTCTCGAACGCTCGAACAGATGGGAAGAAGGTCGAAGGATGTGTTGACTCGTGCTCTCGAACATGC
TCCAACGTGAAGAATTAA
mRNA sequenceShow/hide mRNA sequence
CCCAGAAACAAACTAAACCGAGTTCCAAGAAGCTTGGAAGATGAAGTCAGGTGTTGTAATTGGTTTGGTTTTGAGCATAGTTATGGGCACCGGTAGCTCCCAACACTTGG
GCATGCCAGACTTGTCGAGTAACCCATATTGCTATGCCTTCTGCGTGTTCCCCTGCTTCACTGGCCCCGTCGAATGTGCATTATGCATAAGAAAATGCATATTATCTGCC
CAAGACTCCCCCATGGATATCAATCACTTAAACAATGCTTACTTTTGCAAGCTCGGGTGTGCCACTTCTCGCTGCACTAGGCTCCTCTCGAACGCTCGAACAGATGGGAA
GAAGGTCGAAGGATGTGTTGACTCGTGCTCTCGAACATGCTCCAACGTGAAGAATTAATGAAGGAAGACGAAATTATGTGGAATTAAATGAATAAATAAATAAAATGTCA
AATATTGGTGATAATAAACCATTTGACTATGAAGCTAAACCCTAGATTAAGTTAAGGTGTGTATTATTAGTATTATAAGTAAATAAATAAAAAAATAAGAATATCTTATG
AGAATATTCCTGAAAATTATATTATGACTGGAT
Protein sequenceShow/hide protein sequence
MKSGVVIGLVLSIVMGTGSSQHLGMPDLSSNPYCYAFCVFPCFTGPVECALCIRKCILSAQDSPMDINHLNNAYFCKLGCATSRCTRLLSNARTDGKKVEGCVDSCSRTC
SNVKN