; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

CmoCh17G008370 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh17G008370
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
DescriptionPentatricopeptide repeat-containing protein
Genome locationCmo_Chr17:7821237..7822115
RNA-Seq ExpressionCmoCh17G008370
SyntenyCmoCh17G008370
Gene Ontology termsGO:0005515 - protein binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR002885 - Pentatricopeptide repeat
IPR011990 - Tetratricopeptide-like helical domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6575602.1 putative pentatricopeptide repeat-containing protein, partial [Cucurbita argyrosperma subsp. sororia]1.0e-133100Show/hide
Query:  MDQLQQIDCRAIKTGLTPNPVLQNRRLLRLDSPELGVSLYLEMLRRGVKPDNYTFPFLFKGFTRDISLQCGSELHGHVLKHGLLSNVFVHTALVQMYLLC
        MDQLQQIDCRAIKTGLTPNPVLQNRRLLRLDSPELGVSLYLEMLRRGVKPDNYTFPFLFKGFTRDISLQCGSELHGHVLKHGLLSNVFVHTALVQMYLLC
Subjt:  MDQLQQIDCRAIKTGLTPNPVLQNRRLLRLDSPELGVSLYLEMLRRGVKPDNYTFPFLFKGFTRDISLQCGSELHGHVLKHGLLSNVFVHTALVQMYLLC

Query:  GLLDMARGVLDAGSKADVISWNMMIAAYNKVGKLEESRRLFLACSKLKDFKTGKHVRSCVNNCKVESNLVLENALIDMYAACGEMDSALEIFRNMNNKDI
        GLLDMARGVLDAGSKADVISWNMMIAAYNKVGKLEESRRLFLACSKLKDFKTGKHVRSCVNNCKVESNLVLENALIDMYAACGEMDSALEIFRNMNNKDI
Subjt:  GLLDMARGVLDAGSKADVISWNMMIAAYNKVGKLEESRRLFLACSKLKDFKTGKHVRSCVNNCKVESNLVLENALIDMYAACGEMDSALEIFRNMNNKDI

Query:  ISWTTIVSGFTNLGEIDVARNYFDQMPEKDCVFPGLP
        ISWTTIVSGFTNLGEIDVARNYFDQMPEKDCVFPGLP
Subjt:  ISWTTIVSGFTNLGEIDVARNYFDQMPEKDCVFPGLP

KAG7014144.1 putative pentatricopeptide repeat-containing protein, partial [Cucurbita argyrosperma subsp. argyrosperma]2.8e-12082.61Show/hide
Query:  MDQLQQIDCRAIKTGLTPNPVLQNRRLL------------------RLDSPEL----------GVSLYLEMLRRGVKPDNYTFPFLFKGFTRDISLQCGS
        MDQLQQIDCRAIKTGLTPNPVLQNR +                    +  P L           VSLYLEMLRRGVKPDNYTFPFLFKGFTRDISLQCGS
Subjt:  MDQLQQIDCRAIKTGLTPNPVLQNRRLL------------------RLDSPEL----------GVSLYLEMLRRGVKPDNYTFPFLFKGFTRDISLQCGS

Query:  ELHGHVLKHGLLSNVFVHTALVQMYLLCGLLDMARGVLDAGSKADVISWNMMIAAYNKVGKLEESRRLFL-----------ACSKLKDFKTGKHVRSCVN
        ELHGHVLKHGLLSNVFVHTALVQMYLLCGLLDMARGVLDAGSKADVISWNMMIAAYNKVGKLEESRRLFL           ACSKLKDFKTGKHVRSCVN
Subjt:  ELHGHVLKHGLLSNVFVHTALVQMYLLCGLLDMARGVLDAGSKADVISWNMMIAAYNKVGKLEESRRLFL-----------ACSKLKDFKTGKHVRSCVN

Query:  NCKVESNLVLENALIDMYAACGEMDSALEIFRNMNNKDIISWTTIVSGFTNLGEIDVARNYFDQMPEKDCVFPGLP
        NCKVESNLVLENALIDMYAACGEMDSALEIFRNMNNKDIISWTTIVSGFTNLGEIDVARNYFDQMPEKDCVFPGLP
Subjt:  NCKVESNLVLENALIDMYAACGEMDSALEIFRNMNNKDIISWTTIVSGFTNLGEIDVARNYFDQMPEKDCVFPGLP

XP_022953924.1 LOW QUALITY PROTEIN: putative pentatricopeptide repeat-containing protein At3g15930 [Cucurbita moschata]1.8e-11979.79Show/hide
Query:  MDQLQQIDCRAIKTGLTPNPVLQNRRL------------------------------------LRLDSPELGVSLYLEMLRRGVKPDNYTFPFLFKGFTR
        MDQLQQIDCRAIKTGLTPNPVLQNR +                                     RLDSPELGVSLYLEMLRRGVKPDNYTFPFLFKGFTR
Subjt:  MDQLQQIDCRAIKTGLTPNPVLQNRRL------------------------------------LRLDSPELGVSLYLEMLRRGVKPDNYTFPFLFKGFTR

Query:  DISLQCGSELHGHVLKHGLLSNVFVHTALVQMYLLCGLLDMARGVLDAGSKADVISWNMMIAAYNKVGKLEESRRLFL-------------------ACS
        DISLQCGSELHGHVLKHGLLSNVFVHTALVQMYLLCGLLDMARGVLDAGSKADVISWNMMIAAYNKVGKLEESRRLFL                   ACS
Subjt:  DISLQCGSELHGHVLKHGLLSNVFVHTALVQMYLLCGLLDMARGVLDAGSKADVISWNMMIAAYNKVGKLEESRRLFL-------------------ACS

Query:  KLKDFKTGKHVRSCVNNCKVESNLVLENALIDMYAACGEMDSALEIFRNMNNKDIISWTTIVSGFTNLGEIDVARNYFDQMPEKDCV
        KLKDFKTGKHVRSCVNNCKVESNLVLENALIDMYAACGEMDSALEIFRNMNNKDIISWTTIVSGFTNLGEIDVARNYFDQMPEKDCV
Subjt:  KLKDFKTGKHVRSCVNNCKVESNLVLENALIDMYAACGEMDSALEIFRNMNNKDIISWTTIVSGFTNLGEIDVARNYFDQMPEKDCV

XP_022991386.1 putative pentatricopeptide repeat-containing protein At3g15930 [Cucurbita maxima]7.5e-11375.96Show/hide
Query:  MDQLQQIDCRAIKTGLTPNPVLQNRRLL------------------------------------RLDSPELGVSLYLEMLRRGVKPDNYTFPFLFKGFTR
        MDQLQQI CRAIKTGL  NPVLQNR +                                     RLDSPELGVSLYLEMLRRGVKPDNY+FPFLFKGFTR
Subjt:  MDQLQQIDCRAIKTGLTPNPVLQNRRLL------------------------------------RLDSPELGVSLYLEMLRRGVKPDNYTFPFLFKGFTR

Query:  DISLQCGSELHGHVLKHGLLSNVFVHTALVQMYLLCGLLDMARGVLDAGSKADVISWNMMIAAYNKVGKLEESRRLFL-------------------ACS
        DI+LQCG ELHGHVLKHGLLSNVFVHTALVQMYLLCGLLD ARGVLDAGSKADVI+WNMMIAAYNKVGK EESRRLFL                   ACS
Subjt:  DISLQCGSELHGHVLKHGLLSNVFVHTALVQMYLLCGLLDMARGVLDAGSKADVISWNMMIAAYNKVGKLEESRRLFL-------------------ACS

Query:  KLKDFKTGKHVRSCVNNCKVESNLVLENALIDMYAACGEMDSALEIFRNMNNKDIISWTTIVSGFTNLGEIDVARNYFDQMPEKDCV
        KLKDFKTGKHV SCVNNCKVESNLVLENALIDMYAACGEMDSAL IFRNMNNKDIISWTTIVSGFTNLGEIDVARNYFDQMPEKDCV
Subjt:  KLKDFKTGKHVRSCVNNCKVESNLVLENALIDMYAACGEMDSALEIFRNMNNKDIISWTTIVSGFTNLGEIDVARNYFDQMPEKDCV

XP_023549192.1 LOW QUALITY PROTEIN: putative pentatricopeptide repeat-containing protein At3g15930 [Cucurbita pepo subsp. pepo]8.3e-10471.48Show/hide
Query:  MDQLQQIDCRAIKTGLTPNPVLQN----------------------------------------RRLLRLDSPELGVSLYLEMLRRGVKPDNYTFPFLFK
        MDQLQQI CRAIKTG      LQN                                        R   RLDSP+L VSLYLEMLRRGVKPDNYTFPFLFK
Subjt:  MDQLQQIDCRAIKTGLTPNPVLQN----------------------------------------RRLLRLDSPELGVSLYLEMLRRGVKPDNYTFPFLFK

Query:  GFTRDISLQCGSELHGHVLKHGLLSNVFVHTALVQMYLLCGLLDMARGVLDAGSKADVISWNMMIAAYNKVGKLEESRRLFL------------------
        GFTRDI+L+CG ELHGHVLKHGLLSNVFVHTALVQMYLLCGLLD ARGVLDAGSKADVI+WNMMIAAYNKV K EESRRLFL                  
Subjt:  GFTRDISLQCGSELHGHVLKHGLLSNVFVHTALVQMYLLCGLLDMARGVLDAGSKADVISWNMMIAAYNKVGKLEESRRLFL------------------

Query:  -ACSKLKDFKTGKHVRSCVNNCKVESNLVLENALIDMYAACGEMDSALEIFRNMNNKDIISWTTIVSGFTNLGEIDVARNYFDQMPEKDCV
         ACSKLKDFKTGK V SCVNN KVESNLVLENALIDMYAACGEMDSAL IFRNMNNKDIISWTTIVSGFTNLGE DVARNYFDQMPEKDCV
Subjt:  -ACSKLKDFKTGKHVRSCVNNCKVESNLVLENALIDMYAACGEMDSALEIFRNMNNKDIISWTTIVSGFTNLGEIDVARNYFDQMPEKDCV

TrEMBL top hitse value%identityAlignment
A0A0A0K6A7 DYW_deaminase domain-containing protein1.5e-9566.9Show/hide
Query:  MDQLQQIDCRAIKTGLTPNPVLQN-----------------RRLL-------------------RLDSPELGVSLYLEMLRRGVKPDNYTFPFLFKGFTR
        MDQLQQ+ C+AIK GL  NPVLQN                 RRL                    RLD P+LGVSLYLEMLRRGVKPD YTFPFLFKGFTR
Subjt:  MDQLQQIDCRAIKTGLTPNPVLQN-----------------RRLL-------------------RLDSPELGVSLYLEMLRRGVKPDNYTFPFLFKGFTR

Query:  DISLQCGSELHGHVLKHGLLSNVFVHTALVQMYLLCGLLDMARGVLDAGSKADVISWNMMIAAYNKVGKLEESRRLFL-------------------ACS
        DI+L+ G +LHGHVLKHGL  NVFVHTALVQMYLLCG LD ARGV D   KADVI+WNM+I+AYNKVGK EESRRLFL                   ACS
Subjt:  DISLQCGSELHGHVLKHGLLSNVFVHTALVQMYLLCGLLDMARGVLDAGSKADVISWNMMIAAYNKVGKLEESRRLFL-------------------ACS

Query:  KLKDFKTGKHVRSCVNNCKVESNLVLENALIDMYAACGEMDSALEIFRNMNNKDIISWTTIVSGFTNLGEIDVARNYFDQMPEKDCV
        KLKD +TGK V S V NCKVESNLVLENA+IDMYA CGEMDSAL IFR+MNN+DIISWTTIVSGFTNLGEIDVARNYFD+MPEKD V
Subjt:  KLKDFKTGKHVRSCVNNCKVESNLVLENALIDMYAACGEMDSALEIFRNMNNKDIISWTTIVSGFTNLGEIDVARNYFDQMPEKDCV

A0A1S3CDK0 LOW QUALITY PROTEIN: putative pentatricopeptide repeat-containing protein At3g159309.6e-9867.6Show/hide
Query:  MDQLQQIDCRAIKTGLTPNPVLQNRRL------------------------------------LRLDSPELGVSLYLEMLRRGVKPDNYTFPFLFKGFTR
        MDQLQQ+ C+AIKTGL  NPVLQNR +                                     RLD P+LGVSLYLEMLRRGVKPD YTFPFLFKGFTR
Subjt:  MDQLQQIDCRAIKTGLTPNPVLQNRRL------------------------------------LRLDSPELGVSLYLEMLRRGVKPDNYTFPFLFKGFTR

Query:  DISLQCGSELHGHVLKHGLLSNVFVHTALVQMYLLCGLLDMARGVLDAGSKADVISWNMMIAAYNKVGKLEESRRLFL-------------------ACS
        DI+L+ G +LHGHVLKHGL +NVFVHTALVQMYLLCG LD ARGVLD  SKADVI+WNM+I+AYNKVGK EESRRLFL                   ACS
Subjt:  DISLQCGSELHGHVLKHGLLSNVFVHTALVQMYLLCGLLDMARGVLDAGSKADVISWNMMIAAYNKVGKLEESRRLFL-------------------ACS

Query:  KLKDFKTGKHVRSCVNNCKVESNLVLENALIDMYAACGEMDSALEIFRNMNNKDIISWTTIVSGFTNLGEIDVARNYFDQMPEKDCV
        KLKD +TGK V S V NCKVESNLVLENALIDMYA CGEMDSAL IFR+MNN+DIISWTTIVSGFTNLGEIDVARNYFD+MPEKD V
Subjt:  KLKDFKTGKHVRSCVNNCKVESNLVLENALIDMYAACGEMDSALEIFRNMNNKDIISWTTIVSGFTNLGEIDVARNYFDQMPEKDCV

A0A5A7UUL4 Putative pentatricopeptide repeat-containing protein9.6e-9867.6Show/hide
Query:  MDQLQQIDCRAIKTGLTPNPVLQNRRL------------------------------------LRLDSPELGVSLYLEMLRRGVKPDNYTFPFLFKGFTR
        MDQLQQ+ C+AIKTGL  NPVLQNR +                                     RLD P+LGVSLYLEMLRRGVKPD YTFPFLFKGFTR
Subjt:  MDQLQQIDCRAIKTGLTPNPVLQNRRL------------------------------------LRLDSPELGVSLYLEMLRRGVKPDNYTFPFLFKGFTR

Query:  DISLQCGSELHGHVLKHGLLSNVFVHTALVQMYLLCGLLDMARGVLDAGSKADVISWNMMIAAYNKVGKLEESRRLFL-------------------ACS
        DI+L+ G +LHGHVLKHGL +NVFVHTALVQMYLLCG LD ARGVLD  SKADVI+WNM+I+AYNKVGK EESRRLFL                   ACS
Subjt:  DISLQCGSELHGHVLKHGLLSNVFVHTALVQMYLLCGLLDMARGVLDAGSKADVISWNMMIAAYNKVGKLEESRRLFL-------------------ACS

Query:  KLKDFKTGKHVRSCVNNCKVESNLVLENALIDMYAACGEMDSALEIFRNMNNKDIISWTTIVSGFTNLGEIDVARNYFDQMPEKDCV
        KLKD +TGK V S V NCKVESNLVLENALIDMYA CGEMDSAL IFR+MNN+DIISWTTIVSGFTNLGEIDVARNYFD+MPEKD V
Subjt:  KLKDFKTGKHVRSCVNNCKVESNLVLENALIDMYAACGEMDSALEIFRNMNNKDIISWTTIVSGFTNLGEIDVARNYFDQMPEKDCV

A0A6J1GRB6 LOW QUALITY PROTEIN: putative pentatricopeptide repeat-containing protein At3g159308.9e-12079.79Show/hide
Query:  MDQLQQIDCRAIKTGLTPNPVLQNRRL------------------------------------LRLDSPELGVSLYLEMLRRGVKPDNYTFPFLFKGFTR
        MDQLQQIDCRAIKTGLTPNPVLQNR +                                     RLDSPELGVSLYLEMLRRGVKPDNYTFPFLFKGFTR
Subjt:  MDQLQQIDCRAIKTGLTPNPVLQNRRL------------------------------------LRLDSPELGVSLYLEMLRRGVKPDNYTFPFLFKGFTR

Query:  DISLQCGSELHGHVLKHGLLSNVFVHTALVQMYLLCGLLDMARGVLDAGSKADVISWNMMIAAYNKVGKLEESRRLFL-------------------ACS
        DISLQCGSELHGHVLKHGLLSNVFVHTALVQMYLLCGLLDMARGVLDAGSKADVISWNMMIAAYNKVGKLEESRRLFL                   ACS
Subjt:  DISLQCGSELHGHVLKHGLLSNVFVHTALVQMYLLCGLLDMARGVLDAGSKADVISWNMMIAAYNKVGKLEESRRLFL-------------------ACS

Query:  KLKDFKTGKHVRSCVNNCKVESNLVLENALIDMYAACGEMDSALEIFRNMNNKDIISWTTIVSGFTNLGEIDVARNYFDQMPEKDCV
        KLKDFKTGKHVRSCVNNCKVESNLVLENALIDMYAACGEMDSALEIFRNMNNKDIISWTTIVSGFTNLGEIDVARNYFDQMPEKDCV
Subjt:  KLKDFKTGKHVRSCVNNCKVESNLVLENALIDMYAACGEMDSALEIFRNMNNKDIISWTTIVSGFTNLGEIDVARNYFDQMPEKDCV

A0A6J1JQK8 putative pentatricopeptide repeat-containing protein At3g159303.6e-11375.96Show/hide
Query:  MDQLQQIDCRAIKTGLTPNPVLQNRRLL------------------------------------RLDSPELGVSLYLEMLRRGVKPDNYTFPFLFKGFTR
        MDQLQQI CRAIKTGL  NPVLQNR +                                     RLDSPELGVSLYLEMLRRGVKPDNY+FPFLFKGFTR
Subjt:  MDQLQQIDCRAIKTGLTPNPVLQNRRLL------------------------------------RLDSPELGVSLYLEMLRRGVKPDNYTFPFLFKGFTR

Query:  DISLQCGSELHGHVLKHGLLSNVFVHTALVQMYLLCGLLDMARGVLDAGSKADVISWNMMIAAYNKVGKLEESRRLFL-------------------ACS
        DI+LQCG ELHGHVLKHGLLSNVFVHTALVQMYLLCGLLD ARGVLDAGSKADVI+WNMMIAAYNKVGK EESRRLFL                   ACS
Subjt:  DISLQCGSELHGHVLKHGLLSNVFVHTALVQMYLLCGLLDMARGVLDAGSKADVISWNMMIAAYNKVGKLEESRRLFL-------------------ACS

Query:  KLKDFKTGKHVRSCVNNCKVESNLVLENALIDMYAACGEMDSALEIFRNMNNKDIISWTTIVSGFTNLGEIDVARNYFDQMPEKDCV
        KLKDFKTGKHV SCVNNCKVESNLVLENALIDMYAACGEMDSAL IFRNMNNKDIISWTTIVSGFTNLGEIDVARNYFDQMPEKDCV
Subjt:  KLKDFKTGKHVRSCVNNCKVESNLVLENALIDMYAACGEMDSALEIFRNMNNKDIISWTTIVSGFTNLGEIDVARNYFDQMPEKDCV

SwissProt top hitse value%identityAlignment
O82380 Pentatricopeptide repeat-containing protein At2g29760, chloroplastic2.0e-3133.64Show/hide
Query:  PELGVSLYLEMLRRG-VKPDNYTFPFLFKGFTRDISLQCGSELHGHVLKHGLLSNVFVHTALVQMYLLCGLLDMARGVLDAGSKADVISWNMMIAAYNKV
        P L +  +L+M+      P+ YTFPFL K      SL  G  LHG  +K  + S+VFV  +L+  Y  CG LD A  V     + DV+SWN MI  + + 
Subjt:  PELGVSLYLEMLRRG-VKPDNYTFPFLFKGFTRDISLQCGSELHGHVLKHGLLSNVFVHTALVQMYLLCGLLDMARGVLDAGSKADVISWNMMIAAYNKV

Query:  GKLEESRRLF-------------------LACSKLKDFKTGKHVRSCVNNCKVESNLVLENALIDMYAACGEMDSALEIFRNMNNKDIISWTTIVSGFTN
        G  +++  LF                    AC+K+++ + G+ V S +   +V  NL L NA++DMY  CG ++ A  +F  M  KD ++WTT++ G+  
Subjt:  GKLEESRRLF-------------------LACSKLKDFKTGKHVRSCVNNCKVESNLVLENALIDMYAACGEMDSALEIFRNMNNKDIISWTTIVSGFTN

Query:  LGEIDVARNYFDQMPEKDCV
          + + AR   + MP+KD V
Subjt:  LGEIDVARNYFDQMPEKDCV

Q9FLZ9 Pentatricopeptide repeat-containing protein At5g393505.3e-2932.35Show/hide
Query:  VSLYLEMLRRGVK--PDNYTFPFLFKGFTRDISLQCGSELHGHVLKHGLLSNVFVHTALVQMYLLCGLLDMARGVLDAGSKADVISWNMMIAAYNKVGKL
        +S+++ M+  GVK  PD YT+PF+ K      S++ G  +HG +L+     + +V  AL+ MY+  G ++MAR V D     DVISWN MI+ Y + G +
Subjt:  VSLYLEMLRRGVK--PDNYTFPFLFKGFTRDISLQCGSELHGHVLKHGLLSNVFVHTALVQMYLLCGLLDMARGVLDAGSKADVISWNMMIAAYNKVGKL

Query:  EESRRLF-------------------LACSKLKDFKTGKHVRSCVNNCKVESNLVLENALIDMYAACGEMDSALEIFRNMNNKDIISWTTIVSGFTNLGE
         ++  +F                     C  LKD + G++V   V   ++   + ++NAL++MY  CG MD A  +F  M  +D+I+WT +++G+T  G+
Subjt:  EESRRLF-------------------LACSKLKDFKTGKHVRSCVNNCKVESNLVLENALIDMYAACGEMDSALEIFRNMNNKDIISWTTIVSGFTNLGE

Query:  IDVA
        ++ A
Subjt:  IDVA

Q9LFL5 Pentatricopeptide repeat-containing protein At5g168601.5e-3137Show/hide
Query:  PDNYTFPFLFKGFTRDISLQCGSELHGHVLKHGLLSNVFVHTALVQMYLLCGLLDMARGVLDAGSKADVISWNMMIAAYNKVGKLEESRRLFL-------
        PDNYTFPF+FK      S++CG   H   L  G +SNVFV  ALV MY  C  L  AR V D  S  DV+SWN +I +Y K+GK + +  +F        
Subjt:  PDNYTFPFLFKGFTRDISLQCGSELHGHVLKHGLLSNVFVHTALVQMYLLCGLLDMARGVLDAGSKADVISWNMMIAAYNKVGKLEESRRLFL-------

Query:  -------------ACSKLKDFKTGKHVRSCVNNCKVESNLVLENALIDMYAACGEMDSALEIFRNMNNKDIISWTTIVSGFTNLGEIDVARNYFDQMPEK
                      C+ L     GK +       ++  N+ + N L+DMYA CG MD A  +F NM+ KD++SW  +V+G++ +G  + A   F++M E+
Subjt:  -------------ACSKLKDFKTGKHVRSCVNNCKVESNLVLENALIDMYAACGEMDSALEIFRNMNNKDIISWTTIVSGFTNLGEIDVARNYFDQMPEK

Q9LSB8 Putative pentatricopeptide repeat-containing protein At3g159307.9e-5742.46Show/hide
Query:  DQLQQIDCRAIKTGLTPNPVLQNRRLL------------------------------------RLDSPELGVSLYLEMLRRGVKPDNYTFPFLFKGFTRD
        DQ +Q+  ++I  G+ PNP  Q +  +                                    ++D    GV LYL ML+ GV PD++TFPFL  G  RD
Subjt:  DQLQQIDCRAIKTGLTPNPVLQNRRLL------------------------------------RLDSPELGVSLYLEMLRRGVKPDNYTFPFLFKGFTRD

Query:  -ISLQCGSELHGHVLKHGLLSNVFVHTALVQMYLLCGLLDMARGVLDAGSKADVISWNMMIAAYNKVGKLEESRRLFL-------------------ACS
          +L CG +LH HV+K GL SN++V  ALV+MY LCGL+DMARGV D   K DV SWN+MI+ YN++ + EES  L +                   ACS
Subjt:  -ISLQCGSELHGHVLKHGLLSNVFVHTALVQMYLLCGLLDMARGVLDAGSKADVISWNMMIAAYNKVGKLEESRRLFL-------------------ACS

Query:  KLKDFKTGKHVRSCVNNCKVESNLVLENALIDMYAACGEMDSALEIFRNMNNKDIISWTTIVSGFTNLGEIDVARNYFDQMPEKD
        K+KD    K V   V+ CK E +L LENAL++ YAACGEMD A+ IFR+M  +D+ISWT+IV G+   G + +AR YFDQMP +D
Subjt:  KLKDFKTGKHVRSCVNNCKVESNLVLENALIDMYAACGEMDSALEIFRNMNNKDIISWTTIVSGFTNLGEIDVARNYFDQMPEKD

Q9SJZ3 Pentatricopeptide repeat-containing protein At2g22410, mitochondrial6.7e-3236.89Show/hide
Query:  DSPELGVSLYLEMLRRGV---KPDNYTFPFLFKGFTRDISL-QCGSELHGHVLKHGLLSNVFVHTALVQMYLLCGLLDMARGVLDAGSKADVISWNMMIA
        ++P+    LY +MLR G    +PD++T+P LFK    D+ L   G  + GHVLK  L     VH A + M+  CG ++ AR V D     D++SWN +I 
Subjt:  DSPELGVSLYLEMLRRGV---KPDNYTFPFLFKGFTRDISL-QCGSELHGHVLKHGLLSNVFVHTALVQMYLLCGLLDMARGVLDAGSKADVISWNMMIA

Query:  AYNKVG---------KLEESR----------RLFLACSKLKDFKTGKHVRSCVNNCKVESNLVLENALIDMYAACGEMDSALEIFRNMNNKDIISWTTIV
         Y K+G         KL ES            L  +CS L D   GK     V    +   + L NAL+DM++ CG++  A  IF N+  + I+SWTT++
Subjt:  AYNKVG---------KLEESR----------RLFLACSKLKDFKTGKHVRSCVNNCKVESNLVLENALIDMYAACGEMDSALEIFRNMNNKDIISWTTIV

Query:  SGFTNLGEIDVARNYFDQMPEKDCV
        SG+   G +DV+R  FD M EKD V
Subjt:  SGFTNLGEIDVARNYFDQMPEKDCV

Arabidopsis top hitse value%identityAlignment
AT2G22410.1 SLOW GROWTH 14.8e-3336.89Show/hide
Query:  DSPELGVSLYLEMLRRGV---KPDNYTFPFLFKGFTRDISL-QCGSELHGHVLKHGLLSNVFVHTALVQMYLLCGLLDMARGVLDAGSKADVISWNMMIA
        ++P+    LY +MLR G    +PD++T+P LFK    D+ L   G  + GHVLK  L     VH A + M+  CG ++ AR V D     D++SWN +I 
Subjt:  DSPELGVSLYLEMLRRGV---KPDNYTFPFLFKGFTRDISL-QCGSELHGHVLKHGLLSNVFVHTALVQMYLLCGLLDMARGVLDAGSKADVISWNMMIA

Query:  AYNKVG---------KLEESR----------RLFLACSKLKDFKTGKHVRSCVNNCKVESNLVLENALIDMYAACGEMDSALEIFRNMNNKDIISWTTIV
         Y K+G         KL ES            L  +CS L D   GK     V    +   + L NAL+DM++ CG++  A  IF N+  + I+SWTT++
Subjt:  AYNKVG---------KLEESR----------RLFLACSKLKDFKTGKHVRSCVNNCKVESNLVLENALIDMYAACGEMDSALEIFRNMNNKDIISWTTIV

Query:  SGFTNLGEIDVARNYFDQMPEKDCV
        SG+   G +DV+R  FD M EKD V
Subjt:  SGFTNLGEIDVARNYFDQMPEKDCV

AT2G29760.1 Tetratricopeptide repeat (TPR)-like superfamily protein1.4e-3233.64Show/hide
Query:  PELGVSLYLEMLRRG-VKPDNYTFPFLFKGFTRDISLQCGSELHGHVLKHGLLSNVFVHTALVQMYLLCGLLDMARGVLDAGSKADVISWNMMIAAYNKV
        P L +  +L+M+      P+ YTFPFL K      SL  G  LHG  +K  + S+VFV  +L+  Y  CG LD A  V     + DV+SWN MI  + + 
Subjt:  PELGVSLYLEMLRRG-VKPDNYTFPFLFKGFTRDISLQCGSELHGHVLKHGLLSNVFVHTALVQMYLLCGLLDMARGVLDAGSKADVISWNMMIAAYNKV

Query:  GKLEESRRLF-------------------LACSKLKDFKTGKHVRSCVNNCKVESNLVLENALIDMYAACGEMDSALEIFRNMNNKDIISWTTIVSGFTN
        G  +++  LF                    AC+K+++ + G+ V S +   +V  NL L NA++DMY  CG ++ A  +F  M  KD ++WTT++ G+  
Subjt:  GKLEESRRLF-------------------LACSKLKDFKTGKHVRSCVNNCKVESNLVLENALIDMYAACGEMDSALEIFRNMNNKDIISWTTIVSGFTN

Query:  LGEIDVARNYFDQMPEKDCV
          + + AR   + MP+KD V
Subjt:  LGEIDVARNYFDQMPEKDCV

AT3G15930.1 Pentatricopeptide repeat (PPR) superfamily protein5.6e-5842.46Show/hide
Query:  DQLQQIDCRAIKTGLTPNPVLQNRRLL------------------------------------RLDSPELGVSLYLEMLRRGVKPDNYTFPFLFKGFTRD
        DQ +Q+  ++I  G+ PNP  Q +  +                                    ++D    GV LYL ML+ GV PD++TFPFL  G  RD
Subjt:  DQLQQIDCRAIKTGLTPNPVLQNRRLL------------------------------------RLDSPELGVSLYLEMLRRGVKPDNYTFPFLFKGFTRD

Query:  -ISLQCGSELHGHVLKHGLLSNVFVHTALVQMYLLCGLLDMARGVLDAGSKADVISWNMMIAAYNKVGKLEESRRLFL-------------------ACS
          +L CG +LH HV+K GL SN++V  ALV+MY LCGL+DMARGV D   K DV SWN+MI+ YN++ + EES  L +                   ACS
Subjt:  -ISLQCGSELHGHVLKHGLLSNVFVHTALVQMYLLCGLLDMARGVLDAGSKADVISWNMMIAAYNKVGKLEESRRLFL-------------------ACS

Query:  KLKDFKTGKHVRSCVNNCKVESNLVLENALIDMYAACGEMDSALEIFRNMNNKDIISWTTIVSGFTNLGEIDVARNYFDQMPEKD
        K+KD    K V   V+ CK E +L LENAL++ YAACGEMD A+ IFR+M  +D+ISWT+IV G+   G + +AR YFDQMP +D
Subjt:  KLKDFKTGKHVRSCVNNCKVESNLVLENALIDMYAACGEMDSALEIFRNMNNKDIISWTTIVSGFTNLGEIDVARNYFDQMPEKD

AT5G16860.1 Tetratricopeptide repeat (TPR)-like superfamily protein1.1e-3237Show/hide
Query:  PDNYTFPFLFKGFTRDISLQCGSELHGHVLKHGLLSNVFVHTALVQMYLLCGLLDMARGVLDAGSKADVISWNMMIAAYNKVGKLEESRRLFL-------
        PDNYTFPF+FK      S++CG   H   L  G +SNVFV  ALV MY  C  L  AR V D  S  DV+SWN +I +Y K+GK + +  +F        
Subjt:  PDNYTFPFLFKGFTRDISLQCGSELHGHVLKHGLLSNVFVHTALVQMYLLCGLLDMARGVLDAGSKADVISWNMMIAAYNKVGKLEESRRLFL-------

Query:  -------------ACSKLKDFKTGKHVRSCVNNCKVESNLVLENALIDMYAACGEMDSALEIFRNMNNKDIISWTTIVSGFTNLGEIDVARNYFDQMPEK
                      C+ L     GK +       ++  N+ + N L+DMYA CG MD A  +F NM+ KD++SW  +V+G++ +G  + A   F++M E+
Subjt:  -------------ACSKLKDFKTGKHVRSCVNNCKVESNLVLENALIDMYAACGEMDSALEIFRNMNNKDIISWTTIVSGFTNLGEIDVARNYFDQMPEK

AT5G39350.1 Tetratricopeptide repeat (TPR)-like superfamily protein3.8e-3032.35Show/hide
Query:  VSLYLEMLRRGVK--PDNYTFPFLFKGFTRDISLQCGSELHGHVLKHGLLSNVFVHTALVQMYLLCGLLDMARGVLDAGSKADVISWNMMIAAYNKVGKL
        +S+++ M+  GVK  PD YT+PF+ K      S++ G  +HG +L+     + +V  AL+ MY+  G ++MAR V D     DVISWN MI+ Y + G +
Subjt:  VSLYLEMLRRGVK--PDNYTFPFLFKGFTRDISLQCGSELHGHVLKHGLLSNVFVHTALVQMYLLCGLLDMARGVLDAGSKADVISWNMMIAAYNKVGKL

Query:  EESRRLF-------------------LACSKLKDFKTGKHVRSCVNNCKVESNLVLENALIDMYAACGEMDSALEIFRNMNNKDIISWTTIVSGFTNLGE
         ++  +F                     C  LKD + G++V   V   ++   + ++NAL++MY  CG MD A  +F  M  +D+I+WT +++G+T  G+
Subjt:  EESRRLF-------------------LACSKLKDFKTGKHVRSCVNNCKVESNLVLENALIDMYAACGEMDSALEIFRNMNNKDIISWTTIVSGFTNLGE

Query:  IDVA
        ++ A
Subjt:  IDVA


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGACCAGCTTCAGCAAATTGACTGTCGAGCAATCAAAACAGGTCTCACTCCCAACCCAGTTCTTCAAAACAGAAGGCTACTCCGGTTGGATTCTCCTGAGCTTGGAGT
TTCTTTGTACCTGGAAATGTTGAGGAGAGGTGTTAAGCCTGATAATTACACCTTCCCTTTTCTGTTCAAGGGATTTACAAGAGACATTTCATTGCAATGTGGAAGTGAGC
TTCATGGCCATGTTCTGAAGCATGGGCTGCTGTCTAATGTCTTTGTTCACACTGCTTTGGTACAAATGTATCTTTTGTGTGGCCTACTGGACATGGCTCGTGGGGTCTTG
GATGCTGGTTCTAAGGCTGATGTGATTTCTTGGAATATGATGATTGCTGCTTACAATAAAGTTGGGAAGCTTGAGGAATCAAGAAGACTTTTTCTTGCTTGCTCCAAATT
GAAGGATTTCAAAACTGGGAAGCACGTTCGTAGTTGTGTGAACAACTGCAAGGTTGAGAGCAATTTGGTTCTTGAAAATGCTCTGATTGATATGTATGCTGCTTGTGGGG
AAATGGATTCTGCCCTTGAGATTTTCAGAAATATGAACAACAAGGATATCATATCTTGGACGACCATTGTATCTGGGTTTACCAACTTGGGAGAGATTGATGTTGCTCGG
AACTACTTCGACCAAATGCCTGAGAAAGACTGTGTTTTTCCTGGACTGCCATGA
mRNA sequenceShow/hide mRNA sequence
ATGGACCAGCTTCAGCAAATTGACTGTCGAGCAATCAAAACAGGTCTCACTCCCAACCCAGTTCTTCAAAACAGAAGGCTACTCCGGTTGGATTCTCCTGAGCTTGGAGT
TTCTTTGTACCTGGAAATGTTGAGGAGAGGTGTTAAGCCTGATAATTACACCTTCCCTTTTCTGTTCAAGGGATTTACAAGAGACATTTCATTGCAATGTGGAAGTGAGC
TTCATGGCCATGTTCTGAAGCATGGGCTGCTGTCTAATGTCTTTGTTCACACTGCTTTGGTACAAATGTATCTTTTGTGTGGCCTACTGGACATGGCTCGTGGGGTCTTG
GATGCTGGTTCTAAGGCTGATGTGATTTCTTGGAATATGATGATTGCTGCTTACAATAAAGTTGGGAAGCTTGAGGAATCAAGAAGACTTTTTCTTGCTTGCTCCAAATT
GAAGGATTTCAAAACTGGGAAGCACGTTCGTAGTTGTGTGAACAACTGCAAGGTTGAGAGCAATTTGGTTCTTGAAAATGCTCTGATTGATATGTATGCTGCTTGTGGGG
AAATGGATTCTGCCCTTGAGATTTTCAGAAATATGAACAACAAGGATATCATATCTTGGACGACCATTGTATCTGGGTTTACCAACTTGGGAGAGATTGATGTTGCTCGG
AACTACTTCGACCAAATGCCTGAGAAAGACTGTGTTTTTCCTGGACTGCCATGA
Protein sequenceShow/hide protein sequence
MDQLQQIDCRAIKTGLTPNPVLQNRRLLRLDSPELGVSLYLEMLRRGVKPDNYTFPFLFKGFTRDISLQCGSELHGHVLKHGLLSNVFVHTALVQMYLLCGLLDMARGVL
DAGSKADVISWNMMIAAYNKVGKLEESRRLFLACSKLKDFKTGKHVRSCVNNCKVESNLVLENALIDMYAACGEMDSALEIFRNMNNKDIISWTTIVSGFTNLGEIDVAR
NYFDQMPEKDCVFPGLP