CuGenDBv2

Gene ID	CmoCh17G008670
Organism	Cucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
Description	protein LOW PSII ACCUMULATION 3, chloroplastic
Genome location	Cmo_Chr17:7952991..7957283
RNA-Seq Expression	CmoCh17G008670
Synteny	CmoCh17G008670
Gene Ontology terms	NA
InterPro domains	IPR018962 - Domain of unknown function DUF1995 IPR044687 - Protein LOW PSII ACCUMULATION 3

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAG6575630.1 Protein LOW PSII ACCUMULATION 3, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia]

6.1e-221

99.49

Show/hide

Query:  MAIMAFLSSPPHIPSLVRPFHSNFLFSPIASSFSALRRSTRSSLFGAQTLATSGFCFRIHCSDKERAAPVTRSSDPKAGVPIYKPKTYEVLVSDAANSLA
        MAIMAFLSSPPHIPSLVRP HSNFLFSPI+SSFSALRRSTRSSLFGAQTLATSGFCFRIHCSDKERAAPVTRSSDPKAGVPIYKPKTYEVLVSDAANSLA
Subjt:  MAIMAFLSSPPHIPSLVRPFHSNFLFSPIASSFSALRRSTRSSLFGAQTLATSGFCFRIHCSDKERAAPVTRSSDPKAGVPIYKPKTYEVLVSDAANSLA

Query:  YALEDGKMRLEIDFPPLPSNISSYKGSSDEFIDANIQLALAVARNLQEKRGTRSCIVFPDKPDKGRASQLFKTALDSIDGITISSLDDVPAGPVTSFFRS
        YALEDGKMRLEIDFPPLPSNISSYKGSSDEFIDANIQLALAVARNLQEKRGTRSCIVFPDKPDKGRASQLFKTALDSIDGITISSLDDVPAGPVTSFFRS
Subjt:  YALEDGKMRLEIDFPPLPSNISSYKGSSDEFIDANIQLALAVARNLQEKRGTRSCIVFPDKPDKGRASQLFKTALDSIDGITISSLDDVPAGPVTSFFRS

Query:  IRNTLDFDFEDENAGRWTSSEPPSLYIFINCSTRELAMIEKYVETFASSIPTLMFNLELETLRADLGLLGFPPKDLHYRFLSQFIPVFYIRIREYSKTVP
        IRNTLDFDFEDENAGRWTSSEPPSLYIFINCSTRELAMIEKYVETFASSIPTLMFNLELETLRADLGLLGFPPKDLHYRFLSQFIPVFYIRIREYSKTVP
Subjt:  IRNTLDFDFEDENAGRWTSSEPPSLYIFINCSTRELAMIEKYVETFASSIPTLMFNLELETLRADLGLLGFPPKDLHYRFLSQFIPVFYIRIREYSKTVP

Query:  IAPYIVNYSGALFRQYPGPWQVMLKQADNSYACVAESETRFTLGETKDELLRVLGLQEEQGSSLEFLRRGYKAATWWEEDNDSEVSSAWRS
        IAPYIVNYSGALFRQYPGPWQVMLKQADNSYACVAESETRFTLGETKDELLRVLGLQEEQGSSLEFLRRGYKAATWWEEDNDSEVSSAWRS
Subjt:  IAPYIVNYSGALFRQYPGPWQVMLKQADNSYACVAESETRFTLGETKDELLRVLGLQEEQGSSLEFLRRGYKAATWWEEDNDSEVSSAWRS

KAG7014184.1 Protein LOW PSII ACCUMULATION 3, chloroplastic, partial [Cucurbita argyrosperma subsp. argyrosperma]

5.8e-211

86.22

Show/hide

Query:  MAIMAFLSSPPHIPSLVRPFHSNFLFSPIASSFSALRRSTRSSLFGAQTLATSGFCFRIHCSDKERAAPVTRSSDPKAGVPIYKPKTYEVLVSDAANSLA
        MAIMAFLSSPPHIPSLVRP H NFLFSPI+SSFSALRRSTRSSLFGAQTLATSGFCFRIHCSDKERAAPVTRSSDPKAGVPIYKPKTYEVLVSDAANSLA
Subjt:  MAIMAFLSSPPHIPSLVRPFHSNFLFSPIASSFSALRRSTRSSLFGAQTLATSGFCFRIHCSDKERAAPVTRSSDPKAGVPIYKPKTYEVLVSDAANSLA

Query:  YALEDGKMRLEIDFPPLPSNISSYKGSSDEFIDANIQLALAVARNLQEKRGTRSCIVFPDKPDKGRASQLFKTALDS-----------------------
        YALEDGKMRLEIDFPPLPSNISSYKGSSDEFIDANIQLALAVARNLQEKRGTRSCIVFPDKPDKGRASQLFKTALDS                       
Subjt:  YALEDGKMRLEIDFPPLPSNISSYKGSSDEFIDANIQLALAVARNLQEKRGTRSCIVFPDKPDKGRASQLFKTALDS-----------------------

Query:  ----------IDGITISSLDDVPAGPVTSFFRSIRNTLDFDFEDENAGRWTSSEPPSLYIFINCSTRELAMIEKYV------------------------
                  IDGITISSLDDVPAGPVTSFFRSIRNTLDFDFEDENAGRWTSSEPPSLYIFINCSTRELAMIEKYV                        
Subjt:  ----------IDGITISSLDDVPAGPVTSFFRSIRNTLDFDFEDENAGRWTSSEPPSLYIFINCSTRELAMIEKYV------------------------

Query:  --ETFASSIPTLMFNLELETLRADLGLLGFPPKDLHYRFLSQFIPVFYIRIREYSKTVPIAPYIVNYSGALFRQYPGPWQVMLKQADNSYACVAESETRF
          ETFASSIPTLMFNLELETLRADLGLLGFPPKDLHYRFLSQFIPVFYIRIREYSKTVPIAPYIVNYSGALFRQYPGPWQVMLKQADNSYACVAESETRF
Subjt:  --ETFASSIPTLMFNLELETLRADLGLLGFPPKDLHYRFLSQFIPVFYIRIREYSKTVPIAPYIVNYSGALFRQYPGPWQVMLKQADNSYACVAESETRF

Query:  TLGETKDELLRVLGLQEEQGSSLEFLRRGYKAATWWEEDNDSEVSSAWRS
        TLGETKDELLRVLGLQEEQGSSLEFLRRGYKAATWWEEDNDSEVSSAWRS
Subjt:  TLGETKDELLRVLGLQEEQGSSLEFLRRGYKAATWWEEDNDSEVSSAWRS

XP_022954402.1 protein LOW PSII ACCUMULATION 3, chloroplastic [Cucurbita moschata]

3.3e-222

100

Show/hide

Query:  MAIMAFLSSPPHIPSLVRPFHSNFLFSPIASSFSALRRSTRSSLFGAQTLATSGFCFRIHCSDKERAAPVTRSSDPKAGVPIYKPKTYEVLVSDAANSLA
        MAIMAFLSSPPHIPSLVRPFHSNFLFSPIASSFSALRRSTRSSLFGAQTLATSGFCFRIHCSDKERAAPVTRSSDPKAGVPIYKPKTYEVLVSDAANSLA
Subjt:  MAIMAFLSSPPHIPSLVRPFHSNFLFSPIASSFSALRRSTRSSLFGAQTLATSGFCFRIHCSDKERAAPVTRSSDPKAGVPIYKPKTYEVLVSDAANSLA

Query:  YALEDGKMRLEIDFPPLPSNISSYKGSSDEFIDANIQLALAVARNLQEKRGTRSCIVFPDKPDKGRASQLFKTALDSIDGITISSLDDVPAGPVTSFFRS
        YALEDGKMRLEIDFPPLPSNISSYKGSSDEFIDANIQLALAVARNLQEKRGTRSCIVFPDKPDKGRASQLFKTALDSIDGITISSLDDVPAGPVTSFFRS
Subjt:  YALEDGKMRLEIDFPPLPSNISSYKGSSDEFIDANIQLALAVARNLQEKRGTRSCIVFPDKPDKGRASQLFKTALDSIDGITISSLDDVPAGPVTSFFRS

Query:  IRNTLDFDFEDENAGRWTSSEPPSLYIFINCSTRELAMIEKYVETFASSIPTLMFNLELETLRADLGLLGFPPKDLHYRFLSQFIPVFYIRIREYSKTVP
        IRNTLDFDFEDENAGRWTSSEPPSLYIFINCSTRELAMIEKYVETFASSIPTLMFNLELETLRADLGLLGFPPKDLHYRFLSQFIPVFYIRIREYSKTVP
Subjt:  IRNTLDFDFEDENAGRWTSSEPPSLYIFINCSTRELAMIEKYVETFASSIPTLMFNLELETLRADLGLLGFPPKDLHYRFLSQFIPVFYIRIREYSKTVP

Query:  IAPYIVNYSGALFRQYPGPWQVMLKQADNSYACVAESETRFTLGETKDELLRVLGLQEEQGSSLEFLRRGYKAATWWEEDNDSEVSSAWRS
        IAPYIVNYSGALFRQYPGPWQVMLKQADNSYACVAESETRFTLGETKDELLRVLGLQEEQGSSLEFLRRGYKAATWWEEDNDSEVSSAWRS
Subjt:  IAPYIVNYSGALFRQYPGPWQVMLKQADNSYACVAESETRFTLGETKDELLRVLGLQEEQGSSLEFLRRGYKAATWWEEDNDSEVSSAWRS

XP_022992481.1 protein LOW PSII ACCUMULATION 3, chloroplastic [Cucurbita maxima]

2.8e-221

99.23

Show/hide

Query:  MAIMAFLSSPPHIPSLVRPFHSNFLFSPIASSFSALRRSTRSSLFGAQTLATSGFCFRIHCSDKERAAPVTRSSDPKAGVPIYKPKTYEVLVSDAANSLA
        MAIMAFLSSPPHIPSLVRPFHSNFLFSPI+SSFSALRRSTRSSLFGAQTLATSGFCFRIHCSDKERAAPVTRSSDPKAGVPIYKPKTYEVLVSDAANSLA
Subjt:  MAIMAFLSSPPHIPSLVRPFHSNFLFSPIASSFSALRRSTRSSLFGAQTLATSGFCFRIHCSDKERAAPVTRSSDPKAGVPIYKPKTYEVLVSDAANSLA

Query:  YALEDGKMRLEIDFPPLPSNISSYKGSSDEFIDANIQLALAVARNLQEKRGTRSCIVFPDKPDKGRASQLFKTALDSIDGITISSLDDVPAGPVTSFFRS
        YALEDGKMRLEIDFPPLPSNISSYKGSSDEFIDANIQLALAVARNLQEKRGTRSCIVFPDKPDKGRASQLFKTALDSIDGITISSLDD+PAGPVTSFFRS
Subjt:  YALEDGKMRLEIDFPPLPSNISSYKGSSDEFIDANIQLALAVARNLQEKRGTRSCIVFPDKPDKGRASQLFKTALDSIDGITISSLDDVPAGPVTSFFRS

Query:  IRNTLDFDFEDENAGRWTSSEPPSLYIFINCSTRELAMIEKYVETFASSIPTLMFNLELETLRADLGLLGFPPKDLHYRFLSQFIPVFYIRIREYSKTVP
        IRNTLDFDFEDENAGRWTSSEPPSLYIFINCSTRELAMIEKYVETFASSIPTLMFNLELETLRADLGLLGFPPKDLHYRFLSQFIPVFYIRIREYSKTVP
Subjt:  IRNTLDFDFEDENAGRWTSSEPPSLYIFINCSTRELAMIEKYVETFASSIPTLMFNLELETLRADLGLLGFPPKDLHYRFLSQFIPVFYIRIREYSKTVP

Query:  IAPYIVNYSGALFRQYPGPWQVMLKQADNSYACVAESETRFTLGETKDELLRVLGLQEEQGSSLEFLRRGYKAATWWEEDNDSEVSSAWRS
        IAPYIVNYSGALFRQYPGPWQVMLKQ DNSYACVAESETRFTLGETKDELLRVLGLQEEQGSSLEFLRRGYKAATWWEEDNDSEVSSAWRS
Subjt:  IAPYIVNYSGALFRQYPGPWQVMLKQADNSYACVAESETRFTLGETKDELLRVLGLQEEQGSSLEFLRRGYKAATWWEEDNDSEVSSAWRS

XP_023547388.1 protein LOW PSII ACCUMULATION 3, chloroplastic [Cucurbita pepo subsp. pepo]

1.0e-220

98.98

Show/hide

Query:  MAIMAFLSSPPHIPSLVRPFHSNFLFSPIASSFSALRRSTRSSLFGAQTLATSGFCFRIHCSDKERAAPVTRSSDPKAGVPIYKPKTYEVLVSDAANSLA
        MAIMAFLSSPPHIPSLVRPFHSNFLFSPI+SSFSALRRSTRSSLFGAQTLATSGFCFRIHCSDKERAAPVTRSSDPKAGVPIYKPKTYEVLVSDAANSLA
Subjt:  MAIMAFLSSPPHIPSLVRPFHSNFLFSPIASSFSALRRSTRSSLFGAQTLATSGFCFRIHCSDKERAAPVTRSSDPKAGVPIYKPKTYEVLVSDAANSLA

Query:  YALEDGKMRLEIDFPPLPSNISSYKGSSDEFIDANIQLALAVARNLQEKRGTRSCIVFPDKPDKGRASQLFKTALDSIDGITISSLDDVPAGPVTSFFRS
        YALEDGKMRLEIDFPPLPSNISSYKGSSDEFIDANIQL+LAVARNLQEKRGTRSCIVFPDKPDKGRASQLFKTALDSIDGITISSLDDVPAGPVTSFFRS
Subjt:  YALEDGKMRLEIDFPPLPSNISSYKGSSDEFIDANIQLALAVARNLQEKRGTRSCIVFPDKPDKGRASQLFKTALDSIDGITISSLDDVPAGPVTSFFRS

Query:  IRNTLDFDFEDENAGRWTSSEPPSLYIFINCSTRELAMIEKYVETFASSIPTLMFNLELETLRADLGLLGFPPKDLHYRFLSQFIPVFYIRIREYSKTVP
        IRNTLDFDFEDENAGRWTSSEPPSLYIFINCSTRELAMIEKYVETFASSIPTLMFNLELETLRADLGLLGFPPKDLHYRFLSQFIPVFYIRIREYSKTVP
Subjt:  IRNTLDFDFEDENAGRWTSSEPPSLYIFINCSTRELAMIEKYVETFASSIPTLMFNLELETLRADLGLLGFPPKDLHYRFLSQFIPVFYIRIREYSKTVP

Query:  IAPYIVNYSGALFRQYPGPWQVMLKQADNSYACVAESETRFTLGETKDELLRVLGLQEEQGSSLEFLRRGYKAATWWEEDNDSEVSSAWRS
        IAPYIVNYSGALFRQYPGPWQVMLKQADNSYACVAESETRFTLGETK+ELLRVLGLQEEQGSSLEFLRRGYKA+TWWEEDNDSEVSSAWRS
Subjt:  IAPYIVNYSGALFRQYPGPWQVMLKQADNSYACVAESETRFTLGETKDELLRVLGLQEEQGSSLEFLRRGYKAATWWEEDNDSEVSSAWRS

TrEMBL top hits

e value

%identity

Alignment

A0A0A0KA03 DUF1995 domain-containing protein

1.7e-205

92.58

Show/hide

Query:  MAIMAFLSSPPHIPSLVRPFHSNFLFSPIASSFSALRRSTRSSLFGAQTLATSGFCFRIHCSDKERAAPVTRSSDPKAGVPIYKPKTYEVLVSDAANSLA
        MAIMAFLSSPPHIPSL  PFH+NFLFSPI+SS   LRRSTRSSLFGAQTLA SGFCFRIHC DKERAAPVT+ SDPKAGVPIYKPKTYEVLVSDAANSLA
Subjt:  MAIMAFLSSPPHIPSLVRPFHSNFLFSPIASSFSALRRSTRSSLFGAQTLATSGFCFRIHCSDKERAAPVTRSSDPKAGVPIYKPKTYEVLVSDAANSLA

Query:  YALEDGKMRLEIDFPPLPSNISSYKGSSDEFIDANIQLALAVARNLQEKRGTRSCIVFPDKPDKGRASQLFKTALDSIDGITISSLDDVPAGPVTSFFRS
        YALEDGKMRLEIDFPPLPSNISSYKGSSD+FIDANIQLALAVARNLQEKRG RSCIVFPDKP+K RASQLFKTALDSIDGIT+SSLDDVPAG VTSFFRS
Subjt:  YALEDGKMRLEIDFPPLPSNISSYKGSSDEFIDANIQLALAVARNLQEKRGTRSCIVFPDKPDKGRASQLFKTALDSIDGITISSLDDVPAGPVTSFFRS

Query:  IRNTLDFDFEDENAGRWTSSEPPSLYIFINCSTRELAMIEKYVETFASSIPTLMFNLELETLRADLGLLGFPPKDLHYRFLSQFIPVFYIRIREYSKTVP
        +RNTLDFDFED+NAGRWTSS+PPSLYIFINCSTREL +IEKYVETFASSIP L+FNLELETLRADLGLLGFPPKDLHYRFLSQFIPVFYIRIREYSKTV 
Subjt:  IRNTLDFDFEDENAGRWTSSEPPSLYIFINCSTRELAMIEKYVETFASSIPTLMFNLELETLRADLGLLGFPPKDLHYRFLSQFIPVFYIRIREYSKTVP

Query:  IAPYIVNYSGALFRQYPGPWQVMLKQADNSYACVAESETRFTLGETKDELLRVLGLQEEQGSSLEFLRRGYKAATWWEEDNDSEVSSAWRS
        +APYIVNYSGALFRQY GPWQVMLKQ+DNSYACVAESETRFTLGETKDELLRVLGLQEEQGSSLEFLRRGYKAATWWEED DSEVSSAWRS
Subjt:  IAPYIVNYSGALFRQYPGPWQVMLKQADNSYACVAESETRFTLGETKDELLRVLGLQEEQGSSLEFLRRGYKAATWWEEDNDSEVSSAWRS

A0A1S3CFB8 protein LOW PSII ACCUMULATION 3, chloroplastic

5.4e-207

92.84

Show/hide

Query:  MAIMAFLSSPPHIPSLVRPFHSNFLFSPIASSFSALRRSTRSSLFGAQTLATSGFCFRIHCSDKERAAPVTRSSDPKAGVPIYKPKTYEVLVSDAANSLA
        M IMAF+SSPP+IPSL RPF SNFLFSPI+SS   LRRST SSLFGAQTLA SGFCFRIHC DKERAAPVT+SSDPKAGVPIYKPKTYEVLVSDAANSLA
Subjt:  MAIMAFLSSPPHIPSLVRPFHSNFLFSPIASSFSALRRSTRSSLFGAQTLATSGFCFRIHCSDKERAAPVTRSSDPKAGVPIYKPKTYEVLVSDAANSLA

Query:  YALEDGKMRLEIDFPPLPSNISSYKGSSDEFIDANIQLALAVARNLQEKRGTRSCIVFPDKPDKGRASQLFKTALDSIDGITISSLDDVPAGPVTSFFRS
        YALEDGKMRLEIDFPPLPSNISSYKGSSDEFIDANIQLALAVARNLQEKRGTRSCIVFPDKP+K RAS+LFKTA+DSIDGIT+SSLDDVPAGPVTSFFRS
Subjt:  YALEDGKMRLEIDFPPLPSNISSYKGSSDEFIDANIQLALAVARNLQEKRGTRSCIVFPDKPDKGRASQLFKTALDSIDGITISSLDDVPAGPVTSFFRS

Query:  IRNTLDFDFEDENAGRWTSSEPPSLYIFINCSTRELAMIEKYVETFASSIPTLMFNLELETLRADLGLLGFPPKDLHYRFLSQFIPVFYIRIREYSKTVP
        +RNTLDFDFED+NAGRWTSS+PPSLYIFINCSTREL +IEKYVETFASSIPTL+FNLELETLRADLGLLGFPPKDLHYRFLSQFIPVFYIRIREYSKTV 
Subjt:  IRNTLDFDFEDENAGRWTSSEPPSLYIFINCSTRELAMIEKYVETFASSIPTLMFNLELETLRADLGLLGFPPKDLHYRFLSQFIPVFYIRIREYSKTVP

Query:  IAPYIVNYSGALFRQYPGPWQVMLKQADNSYACVAESETRFTLGETKDELLRVLGLQEEQGSSLEFLRRGYKAATWWEEDNDSEVSSAWRS
        +APYIVNYSGALFRQYPGPWQVMLKQ+DNSYACVAESETRFTLGETKDELLRVLGLQEEQGSSLEFLRRGYKAATWWEED DSEVSSAWRS
Subjt:  IAPYIVNYSGALFRQYPGPWQVMLKQADNSYACVAESETRFTLGETKDELLRVLGLQEEQGSSLEFLRRGYKAATWWEEDNDSEVSSAWRS

A0A5A7UU42 Protein LOW PSII ACCUMULATION 3

3.8e-208

93.35

Show/hide

Query:  MAIMAFLSSPPHIPSLVRPFHSNFLFSPIASSFSALRRSTRSSLFGAQTLATSGFCFRIHCSDKERAAPVTRSSDPKAGVPIYKPKTYEVLVSDAANSLA
        M IMAFLSSPP+IPSL RPFHSNFLFSPI+SS   LRRST SSLFGAQTLA SGFCFRIHC DKERAAPVT+SSDPKAGVPIYKPKTYEVLVSDAANSLA
Subjt:  MAIMAFLSSPPHIPSLVRPFHSNFLFSPIASSFSALRRSTRSSLFGAQTLATSGFCFRIHCSDKERAAPVTRSSDPKAGVPIYKPKTYEVLVSDAANSLA

Query:  YALEDGKMRLEIDFPPLPSNISSYKGSSDEFIDANIQLALAVARNLQEKRGTRSCIVFPDKPDKGRASQLFKTALDSIDGITISSLDDVPAGPVTSFFRS
        YALEDGKMRLEIDFPPLPSNISSYKGSSDEFIDANIQLALAVARNLQEKRGTRSCIVFPDKP+K RAS+LFKTA+DSIDGIT+SSLDDVPAGPVTSFFRS
Subjt:  YALEDGKMRLEIDFPPLPSNISSYKGSSDEFIDANIQLALAVARNLQEKRGTRSCIVFPDKPDKGRASQLFKTALDSIDGITISSLDDVPAGPVTSFFRS

Query:  IRNTLDFDFEDENAGRWTSSEPPSLYIFINCSTRELAMIEKYVETFASSIPTLMFNLELETLRADLGLLGFPPKDLHYRFLSQFIPVFYIRIREYSKTVP
        +RNTLDFDFED+NAGRWTSS+PPSLYIFINCSTREL +IEKYVETFASSIPTL+FNLELETLRADLGLLGFPPKDLHYRFLSQFIPVFYIRIREYSKTV 
Subjt:  IRNTLDFDFEDENAGRWTSSEPPSLYIFINCSTRELAMIEKYVETFASSIPTLMFNLELETLRADLGLLGFPPKDLHYRFLSQFIPVFYIRIREYSKTVP

Query:  IAPYIVNYSGALFRQYPGPWQVMLKQADNSYACVAESETRFTLGETKDELLRVLGLQEEQGSSLEFLRRGYKAATWWEEDNDSEVSSAWRS
        +APYIVNYSGALFRQYPGPWQVMLKQ+DNSYACVAESETRFTLGETKDELLRVLGLQEEQGSSLEFLRRGYKAATWWEED DSEVSSAWRS
Subjt:  IAPYIVNYSGALFRQYPGPWQVMLKQADNSYACVAESETRFTLGETKDELLRVLGLQEEQGSSLEFLRRGYKAATWWEEDNDSEVSSAWRS

A0A6J1GQW6 protein LOW PSII ACCUMULATION 3, chloroplastic

1.6e-222

100

Show/hide

Query:  MAIMAFLSSPPHIPSLVRPFHSNFLFSPIASSFSALRRSTRSSLFGAQTLATSGFCFRIHCSDKERAAPVTRSSDPKAGVPIYKPKTYEVLVSDAANSLA
        MAIMAFLSSPPHIPSLVRPFHSNFLFSPIASSFSALRRSTRSSLFGAQTLATSGFCFRIHCSDKERAAPVTRSSDPKAGVPIYKPKTYEVLVSDAANSLA
Subjt:  MAIMAFLSSPPHIPSLVRPFHSNFLFSPIASSFSALRRSTRSSLFGAQTLATSGFCFRIHCSDKERAAPVTRSSDPKAGVPIYKPKTYEVLVSDAANSLA

Query:  YALEDGKMRLEIDFPPLPSNISSYKGSSDEFIDANIQLALAVARNLQEKRGTRSCIVFPDKPDKGRASQLFKTALDSIDGITISSLDDVPAGPVTSFFRS
        YALEDGKMRLEIDFPPLPSNISSYKGSSDEFIDANIQLALAVARNLQEKRGTRSCIVFPDKPDKGRASQLFKTALDSIDGITISSLDDVPAGPVTSFFRS
Subjt:  YALEDGKMRLEIDFPPLPSNISSYKGSSDEFIDANIQLALAVARNLQEKRGTRSCIVFPDKPDKGRASQLFKTALDSIDGITISSLDDVPAGPVTSFFRS

Query:  IRNTLDFDFEDENAGRWTSSEPPSLYIFINCSTRELAMIEKYVETFASSIPTLMFNLELETLRADLGLLGFPPKDLHYRFLSQFIPVFYIRIREYSKTVP
        IRNTLDFDFEDENAGRWTSSEPPSLYIFINCSTRELAMIEKYVETFASSIPTLMFNLELETLRADLGLLGFPPKDLHYRFLSQFIPVFYIRIREYSKTVP
Subjt:  IRNTLDFDFEDENAGRWTSSEPPSLYIFINCSTRELAMIEKYVETFASSIPTLMFNLELETLRADLGLLGFPPKDLHYRFLSQFIPVFYIRIREYSKTVP

Query:  IAPYIVNYSGALFRQYPGPWQVMLKQADNSYACVAESETRFTLGETKDELLRVLGLQEEQGSSLEFLRRGYKAATWWEEDNDSEVSSAWRS
        IAPYIVNYSGALFRQYPGPWQVMLKQADNSYACVAESETRFTLGETKDELLRVLGLQEEQGSSLEFLRRGYKAATWWEEDNDSEVSSAWRS
Subjt:  IAPYIVNYSGALFRQYPGPWQVMLKQADNSYACVAESETRFTLGETKDELLRVLGLQEEQGSSLEFLRRGYKAATWWEEDNDSEVSSAWRS

A0A6J1JTN7 protein LOW PSII ACCUMULATION 3, chloroplastic

1.3e-221

99.23

Show/hide

Query:  MAIMAFLSSPPHIPSLVRPFHSNFLFSPIASSFSALRRSTRSSLFGAQTLATSGFCFRIHCSDKERAAPVTRSSDPKAGVPIYKPKTYEVLVSDAANSLA
        MAIMAFLSSPPHIPSLVRPFHSNFLFSPI+SSFSALRRSTRSSLFGAQTLATSGFCFRIHCSDKERAAPVTRSSDPKAGVPIYKPKTYEVLVSDAANSLA
Subjt:  MAIMAFLSSPPHIPSLVRPFHSNFLFSPIASSFSALRRSTRSSLFGAQTLATSGFCFRIHCSDKERAAPVTRSSDPKAGVPIYKPKTYEVLVSDAANSLA

Query:  YALEDGKMRLEIDFPPLPSNISSYKGSSDEFIDANIQLALAVARNLQEKRGTRSCIVFPDKPDKGRASQLFKTALDSIDGITISSLDDVPAGPVTSFFRS
        YALEDGKMRLEIDFPPLPSNISSYKGSSDEFIDANIQLALAVARNLQEKRGTRSCIVFPDKPDKGRASQLFKTALDSIDGITISSLDD+PAGPVTSFFRS
Subjt:  YALEDGKMRLEIDFPPLPSNISSYKGSSDEFIDANIQLALAVARNLQEKRGTRSCIVFPDKPDKGRASQLFKTALDSIDGITISSLDDVPAGPVTSFFRS

Query:  IRNTLDFDFEDENAGRWTSSEPPSLYIFINCSTRELAMIEKYVETFASSIPTLMFNLELETLRADLGLLGFPPKDLHYRFLSQFIPVFYIRIREYSKTVP
        IRNTLDFDFEDENAGRWTSSEPPSLYIFINCSTRELAMIEKYVETFASSIPTLMFNLELETLRADLGLLGFPPKDLHYRFLSQFIPVFYIRIREYSKTVP
Subjt:  IRNTLDFDFEDENAGRWTSSEPPSLYIFINCSTRELAMIEKYVETFASSIPTLMFNLELETLRADLGLLGFPPKDLHYRFLSQFIPVFYIRIREYSKTVP

Query:  IAPYIVNYSGALFRQYPGPWQVMLKQADNSYACVAESETRFTLGETKDELLRVLGLQEEQGSSLEFLRRGYKAATWWEEDNDSEVSSAWRS
        IAPYIVNYSGALFRQYPGPWQVMLKQ DNSYACVAESETRFTLGETKDELLRVLGLQEEQGSSLEFLRRGYKAATWWEEDNDSEVSSAWRS
Subjt:  IAPYIVNYSGALFRQYPGPWQVMLKQADNSYACVAESETRFTLGETKDELLRVLGLQEEQGSSLEFLRRGYKAATWWEEDNDSEVSSAWRS

SwissProt top hits

e value

%identity

Alignment

Q8H0W0 Protein LPA3

3.8e-149

73.09

Show/hide

Query:  SLFGAQTLATSGFCFRIHCSDKERA----APVTRSSDPKAGVPIYKPKTYEVLVSDAANSLAYALEDGKMRLEIDFPPLPSNISSYKGSSDEFIDANIQL
        +LF + ++ TS    RI C     +    +  + +SDP+ GVP+YKPK+YEVL +DAANSLA+AL+D K RLEIDFPPLPS+ISSYKGSSD+FIDANIQL
Subjt:  SLFGAQTLATSGFCFRIHCSDKERA----APVTRSSDPKAGVPIYKPKTYEVLVSDAANSLAYALEDGKMRLEIDFPPLPSNISSYKGSSDEFIDANIQL

Query:  ALAVARNLQEKRGTRSCIVFPDKPDKGRASQLFKTALDSIDGITISSLDDVPAGPVTSFFRSIRNTLDFDFEDENAGRWTSSEPPSLYIFINCSTRELAM
        A+ V R LQEK  TR+CIVFPDKP+K RASQ FK A DS+DGI+I SLDD+P   VT+FFRSIR+TLDFDFEDEN G W   EPP+LYIFINCSTREL+ 
Subjt:  ALAVARNLQEKRGTRSCIVFPDKPDKGRASQLFKTALDSIDGITISSLDDVPAGPVTSFFRSIRNTLDFDFEDENAGRWTSSEPPSLYIFINCSTRELAM

Query:  IEKYVETFASSIPTLMFNLELETLRADLGLLGFPPKDLHYRFLSQFIPVFYIRIREYSKTVPIAPYIVNYSGALFRQYPGPWQVMLKQADNSYACVAESE
        IEK+VETFASS P L+FNLEL+TLRADLGLLGFPPKDLHYRFLSQFIPVFYIR REYSKTV +AP+++NY+GALFRQYPGPWQVMLKQ D S+ACVAES 
Subjt:  IEKYVETFASSIPTLMFNLELETLRADLGLLGFPPKDLHYRFLSQFIPVFYIRIREYSKTVPIAPYIVNYSGALFRQYPGPWQVMLKQADNSYACVAESE

Query:  TRFTLGETKDELLRVLGLQEEQGSSLEFLRRGYKAATWWEEDNDSEVSSAWRS
        TRFTLGETK+ELL+VLGLQEE+GSSLEFLRRGYK+ATWWEED + E SS WR+
Subjt:  TRFTLGETKDELLRVLGLQEEQGSSLEFLRRGYKAATWWEEDNDSEVSSAWRS

Arabidopsis top hits

e value

%identity

Alignment

AT1G73060.1 Low PSII Accumulation 3

2.7e-150

73.09

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Query:  SLFGAQTLATSGFCFRIHCSDKERA----APVTRSSDPKAGVPIYKPKTYEVLVSDAANSLAYALEDGKMRLEIDFPPLPSNISSYKGSSDEFIDANIQL
        +LF + ++ TS    RI C     +    +  + +SDP+ GVP+YKPK+YEVL +DAANSLA+AL+D K RLEIDFPPLPS+ISSYKGSSD+FIDANIQL
Subjt:  SLFGAQTLATSGFCFRIHCSDKERA----APVTRSSDPKAGVPIYKPKTYEVLVSDAANSLAYALEDGKMRLEIDFPPLPSNISSYKGSSDEFIDANIQL

Query:  ALAVARNLQEKRGTRSCIVFPDKPDKGRASQLFKTALDSIDGITISSLDDVPAGPVTSFFRSIRNTLDFDFEDENAGRWTSSEPPSLYIFINCSTRELAM
        A+ V R LQEK  TR+CIVFPDKP+K RASQ FK A DS+DGI+I SLDD+P   VT+FFRSIR+TLDFDFEDEN G W   EPP+LYIFINCSTREL+ 
Subjt:  ALAVARNLQEKRGTRSCIVFPDKPDKGRASQLFKTALDSIDGITISSLDDVPAGPVTSFFRSIRNTLDFDFEDENAGRWTSSEPPSLYIFINCSTRELAM

Query:  IEKYVETFASSIPTLMFNLELETLRADLGLLGFPPKDLHYRFLSQFIPVFYIRIREYSKTVPIAPYIVNYSGALFRQYPGPWQVMLKQADNSYACVAESE
        IEK+VETFASS P L+FNLEL+TLRADLGLLGFPPKDLHYRFLSQFIPVFYIR REYSKTV +AP+++NY+GALFRQYPGPWQVMLKQ D S+ACVAES 
Subjt:  IEKYVETFASSIPTLMFNLELETLRADLGLLGFPPKDLHYRFLSQFIPVFYIRIREYSKTVPIAPYIVNYSGALFRQYPGPWQVMLKQADNSYACVAESE

Query:  TRFTLGETKDELLRVLGLQEEQGSSLEFLRRGYKAATWWEEDNDSEVSSAWRS
        TRFTLGETK+ELL+VLGLQEE+GSSLEFLRRGYK+ATWWEED + E SS WR+
Subjt:  TRFTLGETKDELLRVLGLQEEQGSSLEFLRRGYKAATWWEEDNDSEVSSAWRS

AT5G48790.1 Domain of unknown function (DUF1995)

1.9e-10

26.6

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Query:  PKTYEVLVSDAANSLAYALEDGKMRLEIDFPPLPSNISSYKGSSD---EFIDANIQLALAVARNLQEKRGTRSCIVFPDKPDKGRASQLFKTALDSIDGI
        P+ Y  L++ A  ++  AL+D K  +EI+FP   S ++S  G  +   E  ++   +     R L  ++   + I FP+  +        K A  ++ G 
Subjt:  PKTYEVLVSDAANSLAYALEDGKMRLEIDFPPLPSNISSYKGSSD---EFIDANIQLALAVARNLQEKRGTRSCIVFPDKPDKGRASQLFKTALDSIDGI

Query:  TISSLDDVPAGPVTSFFRSIRNTLDFDFED--ENAGRWTSSEPPSLYIFINCSTRELAMIEK-YVETFASSIPTL-MFNLELETLRADLGLLGFPPKDLH
        T   LD +      S F       DF F +  + A R    +   L  +   +  E+ ++E+ Y E   ++   L +FN EL+ +R+     G+ PK   
Subjt:  TISSLDDVPAGPVTSFFRSIRNTLDFDFED--ENAGRWTSSEPPSLYIFINCSTRELAMIEK-YVETFASSIPTL-MFNLELETLRADLGLLGFPPKDLH

Query:  YRFLSQFIPVFYIRIREYSKT----VPIAPYIVNY----SGALFRQYPGPWQVMLKQADNSYACVAESETRFTLGETKDELL
                  FY ++   +KT    +    YI N+     G LFR YPGPWQV L++  N Y CV + E+  +L E   ++L
Subjt:  YRFLSQFIPVFYIRIREYSKT----VPIAPYIVNY----SGALFRQYPGPWQVMLKQADNSYACVAESETRFTLGETKDELL

Sequences

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CDS sequence

Show/hide CDS sequence

ATGGCGATCATGGCGTTTCTCTCTTCTCCACCGCACATTCCCTCTCTGGTTCGACCGTTTCACAGCAATTTTCTCTTCTCTCCTATTGCCTCTTCCTTCAGTGCTCTACG
GCGTTCTACTCGATCCAGTTTATTTGGCGCTCAAACTTTAGCCACTTCGGGATTTTGCTTTAGGATACACTGCAGTGACAAAGAACGAGCTGCACCGGTTACTCGGAGCT
CCGATCCTAAGGCTGGAGTTCCGATTTATAAGCCTAAAACCTACGAGGTGCTAGTCTCCGATGCTGCGAATTCTCTTGCTTATGCTCTGGAGGATGGAAAGATGCGCTTG
GAGATTGATTTCCCACCCCTGCCTAGCAACATTTCCTCGTATAAGGGATCTTCAGATGAGTTCATTGATGCAAATATTCAACTTGCCCTGGCTGTTGCAAGGAATCTTCA
AGAAAAGAGAGGAACTAGATCTTGCATTGTATTTCCAGATAAACCAGACAAAGGCAGAGCTTCACAGTTGTTCAAAACAGCTCTCGACTCGATTGATGGAATAACCATAA
GTTCCCTAGATGATGTTCCTGCTGGACCTGTAACTTCTTTTTTCAGATCTATTAGAAACACCCTTGATTTTGATTTTGAAGACGAGAATGCAGGTCGTTGGACTTCTAGT
GAACCTCCATCTCTGTACATATTTATTAATTGCAGCACGCGTGAACTTGCAATGATAGAGAAGTATGTGGAAACTTTTGCTTCGTCAATCCCCACCCTGATGTTTAATCT
AGAACTTGAAACCTTGCGTGCAGACTTGGGCTTACTGGGATTCCCCCCCAAAGATTTGCATTATCGATTTCTCTCTCAGTTTATCCCGGTGTTTTACATTAGAATCAGAG
AGTATTCTAAGACAGTACCAATAGCACCTTATATTGTTAATTACAGTGGAGCATTGTTTCGTCAATACCCTGGACCTTGGCAAGTGATGTTAAAACAAGCAGATAATTCT
TATGCATGCGTTGCAGAGAGTGAGACGAGGTTCACCCTTGGTGAAACCAAAGATGAACTACTAAGAGTCCTTGGACTACAGGAAGAACAAGGAAGCTCATTAGAATTTCT
TCGCAGGGGCTACAAGGCTGCCACTTGGTGGGAAGAAGATAATGACTCTGAAGTATCTTCAGCGTGGCGTAGTTGA

mRNA sequence

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GGCTAAAATGCAAATATTCGAGAAGAGAGAGGACCCGCGCGAAAATAGCGGAGTGGCATCTTCAAGTTCGTTATCGTCTCATCCAAACGACCGGCTGTCTTTTCCCCGGC
GACTGAACTTCCACTGAGAACTTCAGAGAGCTTAGCCATGGCGATCATGGCGTTTCTCTCTTCTCCACCGCACATTCCCTCTCTGGTTCGACCGTTTCACAGCAATTTTC
TCTTCTCTCCTATTGCCTCTTCCTTCAGTGCTCTACGGCGTTCTACTCGATCCAGTTTATTTGGCGCTCAAACTTTAGCCACTTCGGGATTTTGCTTTAGGATACACTGC
AGTGACAAAGAACGAGCTGCACCGGTTACTCGGAGCTCCGATCCTAAGGCTGGAGTTCCGATTTATAAGCCTAAAACCTACGAGGTGCTAGTCTCCGATGCTGCGAATTC
TCTTGCTTATGCTCTGGAGGATGGAAAGATGCGCTTGGAGATTGATTTCCCACCCCTGCCTAGCAACATTTCCTCGTATAAGGGATCTTCAGATGAGTTCATTGATGCAA
ATATTCAACTTGCCCTGGCTGTTGCAAGGAATCTTCAAGAAAAGAGAGGAACTAGATCTTGCATTGTATTTCCAGATAAACCAGACAAAGGCAGAGCTTCACAGTTGTTC
AAAACAGCTCTCGACTCGATTGATGGAATAACCATAAGTTCCCTAGATGATGTTCCTGCTGGACCTGTAACTTCTTTTTTCAGATCTATTAGAAACACCCTTGATTTTGA
TTTTGAAGACGAGAATGCAGGTCGTTGGACTTCTAGTGAACCTCCATCTCTGTACATATTTATTAATTGCAGCACGCGTGAACTTGCAATGATAGAGAAGTATGTGGAAA
CTTTTGCTTCGTCAATCCCCACCCTGATGTTTAATCTAGAACTTGAAACCTTGCGTGCAGACTTGGGCTTACTGGGATTCCCCCCCAAAGATTTGCATTATCGATTTCTC
TCTCAGTTTATCCCGGTGTTTTACATTAGAATCAGAGAGTATTCTAAGACAGTACCAATAGCACCTTATATTGTTAATTACAGTGGAGCATTGTTTCGTCAATACCCTGG
ACCTTGGCAAGTGATGTTAAAACAAGCAGATAATTCTTATGCATGCGTTGCAGAGAGTGAGACGAGGTTCACCCTTGGTGAAACCAAAGATGAACTACTAAGAGTCCTTG
GACTACAGGAAGAACAAGGAAGCTCATTAGAATTTCTTCGCAGGGGCTACAAGGCTGCCACTTGGTGGGAAGAAGATAATGACTCTGAAGTATCTTCAGCGTGGCGTAGT
TGA

Protein sequence

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MAIMAFLSSPPHIPSLVRPFHSNFLFSPIASSFSALRRSTRSSLFGAQTLATSGFCFRIHCSDKERAAPVTRSSDPKAGVPIYKPKTYEVLVSDAANSLAYALEDGKMRL
EIDFPPLPSNISSYKGSSDEFIDANIQLALAVARNLQEKRGTRSCIVFPDKPDKGRASQLFKTALDSIDGITISSLDDVPAGPVTSFFRSIRNTLDFDFEDENAGRWTSS
EPPSLYIFINCSTRELAMIEKYVETFASSIPTLMFNLELETLRADLGLLGFPPKDLHYRFLSQFIPVFYIRIREYSKTVPIAPYIVNYSGALFRQYPGPWQVMLKQADNS
YACVAESETRFTLGETKDELLRVLGLQEEQGSSLEFLRRGYKAATWWEEDNDSEVSSAWRS

CmoCh17G008670 (gene) of Cucurbita moschata (Rifu) v1 genome