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CmoCh17G008830 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh17G008830
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
Descriptionprotein HEADING DATE REPRESSOR 1
Genome locationCmo_Chr17:8032775..8035550
RNA-Seq ExpressionCmoCh17G008830
SyntenyCmoCh17G008830
Gene Ontology termsGO:0009909 - regulation of flower development (biological process)
InterPro domainsIPR038864 - Protein heading date repressor 1


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6575643.1 Protein HEADING DATE REPRESSOR 1, partial [Cucurbita argyrosperma subsp. sororia]3.7e-3692.22Show/hide
Query:  MERNYSGDIDRILEGFSPASAPRIQWKSRRRSGKKRELVNADIVESMQRIAILEMNRKDRKIGRLNDQLAEAARCLEYLQLQLVLEKSKR
        MERN SGDIDRILEGFSPAS+PRIQWKSRRRSGKKR+LVNADIVESM+RIAILEMNRKDRKIG LNDQLAE ARCLEYLQLQLV EKSKR
Subjt:  MERNYSGDIDRILEGFSPASAPRIQWKSRRRSGKKRELVNADIVESMQRIAILEMNRKDRKIGRLNDQLAEAARCLEYLQLQLVLEKSKR

KAG6593354.1 Protein HEADING DATE REPRESSOR 1, partial [Cucurbita argyrosperma subsp. sororia]1.2e-1841.18Show/hide
Query:  MERNYSGDIDRILEGFSPASAPRIQWKSRRRS--------------------------------------------------------------------
        M R+ SG +DRILEGFSPASAPRIQWKSRRRS                                                                    
Subjt:  MERNYSGDIDRILEGFSPASAPRIQWKSRRRS--------------------------------------------------------------------

Query:  ------------GKKRELVNADIVESMQRIAILEMNRKDRKIGRLNDQLAEAARCLEYLQLQLVLEKSKR
                    GKKR+LVN D+VESM+RIAI EMNRKDR+I  LN+QL E ARCLE+LQ+QL+ EKSKR
Subjt:  ------------GKKRELVNADIVESMQRIAILEMNRKDRKIGRLNDQLAEAARCLEYLQLQLVLEKSKR

KAG7014195.1 Protein HEADING DATE REPRESSOR 1, partial [Cucurbita argyrosperma subsp. argyrosperma]2.1e-3692.22Show/hide
Query:  MERNYSGDIDRILEGFSPASAPRIQWKSRRRSGKKRELVNADIVESMQRIAILEMNRKDRKIGRLNDQLAEAARCLEYLQLQLVLEKSKR
        MERN SGDIDRILEGFSPAS+PRIQWKS RRSGKKR+LVNADIVESM+RIAILEMNRKDRKIGRLNDQLAE ARCLEYLQLQLV EKSKR
Subjt:  MERNYSGDIDRILEGFSPASAPRIQWKSRRRSGKKRELVNADIVESMQRIAILEMNRKDRKIGRLNDQLAEAARCLEYLQLQLVLEKSKR

XP_023515206.1 protein HEADING DATE REPRESSOR 1-like [Cucurbita pepo subsp. pepo]2.4e-1941.76Show/hide
Query:  MERNYSGDIDRILEGFSPASAPRIQWKSRRRS--------------------------------------------------------------------
        M R+ SG +DRILEGFSPASAPRIQWKSRRRS                                                                    
Subjt:  MERNYSGDIDRILEGFSPASAPRIQWKSRRRS--------------------------------------------------------------------

Query:  ------------GKKRELVNADIVESMQRIAILEMNRKDRKIGRLNDQLAEAARCLEYLQLQLVLEKSKR
                    GKKR+LVN D+VESM+RIAI EMNRKDR+IG LN+QL E ARCLE+LQ+QL+ EKSKR
Subjt:  ------------GKKRELVNADIVESMQRIAILEMNRKDRKIGRLNDQLAEAARCLEYLQLQLVLEKSKR

XP_038897908.1 protein HEADING DATE REPRESSOR 1 [Benincasa hispida]4.1e-1940.68Show/hide
Query:  MERNYSGDIDRILEGFSPASAPRIQWKSRRRS--------------------------------------------------------------------
        ME N+SG IDRILEGFSPASAPRIQWKSRRRS                                                                    
Subjt:  MERNYSGDIDRILEGFSPASAPRIQWKSRRRS--------------------------------------------------------------------

Query:  -------------------GKKRELVNADIVESMQRIAILEMNRKDRKIGRLNDQLAEAARCLEYLQLQLVLEKSKR
                           GKKR+LVN D+VESM+RIA+ EMNRKDR+I  LN+QL E ARCLE+LQLQL+ EKSKR
Subjt:  -------------------GKKRELVNADIVESMQRIAILEMNRKDRKIGRLNDQLAEAARCLEYLQLQLVLEKSKR

TrEMBL top hitse value%identityAlignment
A0A1S3CE60 uncharacterized protein LOC1034998619.8e-1939.55Show/hide
Query:  MERNYSGDIDRILEGFSPASAPRIQWKSRRRS--------------------------------------------------------------------
        ME N+SG IDRILEGFSPASAPRIQW SRRRS                                                                    
Subjt:  MERNYSGDIDRILEGFSPASAPRIQWKSRRRS--------------------------------------------------------------------

Query:  -------------------GKKRELVNADIVESMQRIAILEMNRKDRKIGRLNDQLAEAARCLEYLQLQLVLEKSKR
                           GKKR+LVN D+VESM+RIA+ EMNRKDR+I  LN+QL E ARCLE+LQ+QL+ EKSKR
Subjt:  -------------------GKKRELVNADIVESMQRIAILEMNRKDRKIGRLNDQLAEAARCLEYLQLQLVLEKSKR

A0A5A7UUH2 Protein HEADING DATE REPRESSOR 1-like isoform X29.8e-1939.55Show/hide
Query:  MERNYSGDIDRILEGFSPASAPRIQWKSRRRS--------------------------------------------------------------------
        ME N+SG IDRILEGFSPASAPRIQW SRRRS                                                                    
Subjt:  MERNYSGDIDRILEGFSPASAPRIQWKSRRRS--------------------------------------------------------------------

Query:  -------------------GKKRELVNADIVESMQRIAILEMNRKDRKIGRLNDQLAEAARCLEYLQLQLVLEKSKR
                           GKKR+LVN D+VESM+RIA+ EMNRKDR+I  LN+QL E ARCLE+LQ+QL+ EKSKR
Subjt:  -------------------GKKRELVNADIVESMQRIAILEMNRKDRKIGRLNDQLAEAARCLEYLQLQLVLEKSKR

A0A6J1D3E7 protein HEADING DATE REPRESSOR 19.8e-1940.45Show/hide
Query:  MERNYSGDIDRILEGFSPASAPRIQWKSRRRS--------------------------------------------------------------------
        MER+ SG IDRILEGFSPASAPRI WKSRRRS                                                                    
Subjt:  MERNYSGDIDRILEGFSPASAPRIQWKSRRRS--------------------------------------------------------------------

Query:  --------------------GKKRELVNADIVESMQRIAILEMNRKDRKIGRLNDQLAEAARCLEYLQLQLVLEKSKR
                            GKKR+LVN D+VESM+RIA+ EMNRKDR+I  LN+QL E ARCLE+LQLQLV EKSKR
Subjt:  --------------------GKKRELVNADIVESMQRIAILEMNRKDRKIGRLNDQLAEAARCLEYLQLQLVLEKSKR

A0A6J1H5Q2 protein HEADING DATE REPRESSOR 1-like isoform X27.5e-1941.18Show/hide
Query:  MERNYSGDIDRILEGFSPASAPRIQWKSRRRS--------------------------------------------------------------------
        M R+ SG +DRILEGFSPASAPRIQWKSRRRS                                                                    
Subjt:  MERNYSGDIDRILEGFSPASAPRIQWKSRRRS--------------------------------------------------------------------

Query:  ------------GKKRELVNADIVESMQRIAILEMNRKDRKIGRLNDQLAEAARCLEYLQLQLVLEKSKR
                    GKKR+LVN D+VESM+RIAI EMNRKDR+I  LN+QL E ARCLE+LQ+QL+ EKSKR
Subjt:  ------------GKKRELVNADIVESMQRIAILEMNRKDRKIGRLNDQLAEAARCLEYLQLQLVLEKSKR

A0A6J1KTY5 protein HEADING DATE REPRESSOR 12.8e-1840.59Show/hide
Query:  MERNYSGDIDRILEGFSPASAPRIQWKSRRRS--------------------------------------------------------------------
        M  + SG +DRILEGFSPASAPRIQWKSRRRS                                                                    
Subjt:  MERNYSGDIDRILEGFSPASAPRIQWKSRRRS--------------------------------------------------------------------

Query:  ------------GKKRELVNADIVESMQRIAILEMNRKDRKIGRLNDQLAEAARCLEYLQLQLVLEKSKR
                    GKKR+LVN D+VESM+RIAI EMNRKDR+I  LN+QL E ARCLE+LQ+QL+ EKSKR
Subjt:  ------------GKKRELVNADIVESMQRIAILEMNRKDRKIGRLNDQLAEAARCLEYLQLQLVLEKSKR

SwissProt top hitse value%identityAlignment
B8AE37 Protein HEADING DATE REPRESSOR 13.5e-1360Show/hide
Query:  FSPASAPRIQWKSRRRSGKKRELVNADIVESMQRIAILEMNRKDRKIGRLNDQLAEAARCLEYLQLQLVLEKSKR
        F PAS P+  W      GKKR+LVN D+VESM+RIAI EMNRKDR+I  LN+QL E +R LE LQ QL  E+ KR
Subjt:  FSPASAPRIQWKSRRRSGKKRELVNADIVESMQRIAILEMNRKDRKIGRLNDQLAEAARCLEYLQLQLVLEKSKR

Q6K678 Protein HEADING DATE REPRESSOR 13.5e-1360Show/hide
Query:  FSPASAPRIQWKSRRRSGKKRELVNADIVESMQRIAILEMNRKDRKIGRLNDQLAEAARCLEYLQLQLVLEKSKR
        F PAS P+  W      GKKR+LVN D+VESM+RIAI EMNRKDR+I  LN+QL E +R LE LQ QL  E+ KR
Subjt:  FSPASAPRIQWKSRRRSGKKRELVNADIVESMQRIAILEMNRKDRKIGRLNDQLAEAARCLEYLQLQLVLEKSKR

Arabidopsis top hitse value%identityAlignment
AT1G80940.1 unknown protein2.0e-1670.69Show/hide
Query:  GKKRELVNADIVESMQRIAILEMNRKDRKIGRLNDQLAEAARCLEYLQLQLVLEKSKR
        GKKR+LVN D+VESM+RIA+ EMNRKDR+I  LN+QL E +RCLE+LQLQL+ E+SKR
Subjt:  GKKRELVNADIVESMQRIAILEMNRKDRKIGRLNDQLAEAARCLEYLQLQLVLEKSKR

AT1G80940.2 unknown protein7.9e-0576.92Show/hide
Query:  GKKRELVNADIVESMQRIAILEMNRK
        GKKR+LVN D+VESM+RIA+ EMNRK
Subjt:  GKKRELVNADIVESMQRIAILEMNRK


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAGCGCAATTATTCCGGCGACATTGATAGGATTCTGGAAGGTTTTTCTCCGGCGTCCGCTCCCCGAATTCAGTGGAAATCTCGTCGGAGGTCAGGGAAGAAGCGCGA
ACTTGTCAATGCCGACATTGTCGAGAGCATGCAGAGGATTGCCATACTGGAAATGAACAGAAAGGATCGGAAAATCGGCAGGCTGAACGATCAGCTCGCCGAGGCTGCTC
GCTGCTTGGAATATCTTCAACTTCAGCTTGTACTAGAAAAGAGCAAAAGATAA
mRNA sequenceShow/hide mRNA sequence
ATGGAGCGCAATTATTCCGGCGACATTGATAGGATTCTGGAAGGTTTTTCTCCGGCGTCCGCTCCCCGAATTCAGTGGAAATCTCGTCGGAGGTCAGGGAAGAAGCGCGA
ACTTGTCAATGCCGACATTGTCGAGAGCATGCAGAGGATTGCCATACTGGAAATGAACAGAAAGGATCGGAAAATCGGCAGGCTGAACGATCAGCTCGCCGAGGCTGCTC
GCTGCTTGGAATATCTTCAACTTCAGCTTGTACTAGAAAAGAGCAAAAGATAAGAGGTTGAAAGAGAAAACGCAATGGTGATGAACCTTAATTATATCATTATATATTTA
ATTTGTTTCTTTAATATATATATTTTGTAGATTATAGTTGGATAGGAACTTAATTATGTTTAAATTAATTTATATAAAATAAATTGGCAGATTAATGGATTAAA
Protein sequenceShow/hide protein sequence
MERNYSGDIDRILEGFSPASAPRIQWKSRRRSGKKRELVNADIVESMQRIAILEMNRKDRKIGRLNDQLAEAARCLEYLQLQLVLEKSKR