; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

CmoCh17G008900 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh17G008900
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
Descriptionprotein UPSTREAM OF FLC-like
Genome locationCmo_Chr17:8089342..8090789
RNA-Seq ExpressionCmoCh17G008900
SyntenyCmoCh17G008900
Gene Ontology termsGO:0051258 - protein polymerization (biological process)
GO:0005886 - plasma membrane (cellular component)
InterPro domainsIPR010369 - Protein SOSEKI


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6575652.1 hypothetical protein SDJN03_26291, partial [Cucurbita argyrosperma subsp. sororia]1.0e-8498.8Show/hide
Query:  MLRQWITCRAVDANDAVLINNLSPKASPNPPSLEKSRNAAVFCRDDEFGGSARVPRNSWDGNLQIRRHYSHPSFRKSFDDSRKKRQKESGGRKAAAAPIY
        MLRQWITCRAVDANDAVLINNLSPKASPNPP LEKS NAAVFCRDDEFGGSARVPRNSWDGNLQIRRHYSHPSFRKSFDDSRKKRQKESGGRKAAAAPIY
Subjt:  MLRQWITCRAVDANDAVLINNLSPKASPNPPSLEKSRNAAVFCRDDEFGGSARVPRNSWDGNLQIRRHYSHPSFRKSFDDSRKKRQKESGGRKAAAAPIY

Query:  KPMAGPNCSLCGKTFRPEKMHSHMKSCRGLRSLTKTASTSNKTTSSKSTTTPTSDKDSASTYLLTH
        KPMAGPNCSLCGKTFRPEKMHSHMKSCRGLRSLTKTASTSNKTTSSKSTTTPTSDKDSASTYLLTH
Subjt:  KPMAGPNCSLCGKTFRPEKMHSHMKSCRGLRSLTKTASTSNKTTSSKSTTTPTSDKDSASTYLLTH

KAG7014201.1 hypothetical protein SDJN02_24376, partial [Cucurbita argyrosperma subsp. argyrosperma]5.5e-7894.58Show/hide
Query:  MLRQWITCRAVDANDAVLINNLSPKASPNPPSLEKSRNAAVFCRDDEFGGSARVPRNSWDGNLQIRRHYSHPSFRKSFDDSRKKRQKESGGRKAAAAPIY
        MLRQWITCRAVDANDAVLINNLSPKASPNPP LEKS NAAVFCRDDEFGGSARVPRNSWDGNLQIRRHYSHPSFRKSFDDSRKKRQKESGGRKAAAAPIY
Subjt:  MLRQWITCRAVDANDAVLINNLSPKASPNPPSLEKSRNAAVFCRDDEFGGSARVPRNSWDGNLQIRRHYSHPSFRKSFDDSRKKRQKESGGRKAAAAPIY

Query:  KPMAGPNCSLCGKTFRPEKMHSHMKSCRGLRSLTKTASTSNKTTSSKSTTTPTSDKDSASTYLLTH
        KPMAGPNCS       PEKMHSHMKSCRGLRSLTKTASTSNKTTSSKSTTTPTSDKDSASTYLLTH
Subjt:  KPMAGPNCSLCGKTFRPEKMHSHMKSCRGLRSLTKTASTSNKTTSSKSTTTPTSDKDSASTYLLTH

XP_022953921.1 uncharacterized protein LOC111456325 [Cucurbita moschata]3.2e-86100Show/hide
Query:  MLRQWITCRAVDANDAVLINNLSPKASPNPPSLEKSRNAAVFCRDDEFGGSARVPRNSWDGNLQIRRHYSHPSFRKSFDDSRKKRQKESGGRKAAAAPIY
        MLRQWITCRAVDANDAVLINNLSPKASPNPPSLEKSRNAAVFCRDDEFGGSARVPRNSWDGNLQIRRHYSHPSFRKSFDDSRKKRQKESGGRKAAAAPIY
Subjt:  MLRQWITCRAVDANDAVLINNLSPKASPNPPSLEKSRNAAVFCRDDEFGGSARVPRNSWDGNLQIRRHYSHPSFRKSFDDSRKKRQKESGGRKAAAAPIY

Query:  KPMAGPNCSLCGKTFRPEKMHSHMKSCRGLRSLTKTASTSNKTTSSKSTTTPTSDKDSASTYLLTH
        KPMAGPNCSLCGKTFRPEKMHSHMKSCRGLRSLTKTASTSNKTTSSKSTTTPTSDKDSASTYLLTH
Subjt:  KPMAGPNCSLCGKTFRPEKMHSHMKSCRGLRSLTKTASTSNKTTSSKSTTTPTSDKDSASTYLLTH

XP_022991936.1 uncharacterized protein LOC111488428 [Cucurbita maxima]4.2e-7892.17Show/hide
Query:  MLRQWITCRAVDANDAVLINNLSPKASPNPPSLEKSRNAAVFCRDDEFGGSARVPRNSWDGNLQIRRHYSHPSFRKSFDDSRKKRQKESGGRKAAAAPIY
        MLRQWITCR VDANDAVLINNLSP+ASPNP   EKS NAAVFCRDDEFGGSARVPRNSWDGNLQIRRHYSHPSFRKS DDSRKKRQKES GRK AA P Y
Subjt:  MLRQWITCRAVDANDAVLINNLSPKASPNPPSLEKSRNAAVFCRDDEFGGSARVPRNSWDGNLQIRRHYSHPSFRKSFDDSRKKRQKESGGRKAAAAPIY

Query:  KPMAGPNCSLCGKTFRPEKMHSHMKSCRGLRSLTKTASTSNKTTSSKSTTTPTSDKDSASTYLLTH
        KP+AGP+CSLCGKTFRPEKMHSHMKSCRGLRSLTKTASTSNKTTSSKSTTTPTSDKDSASTYLLTH
Subjt:  KPMAGPNCSLCGKTFRPEKMHSHMKSCRGLRSLTKTASTSNKTTSSKSTTTPTSDKDSASTYLLTH

XP_023548453.1 uncharacterized protein LOC111807110 [Cucurbita pepo subsp. pepo]4.5e-8094.58Show/hide
Query:  MLRQWITCRAVDANDAVLINNLSPKASPNPPSLEKSRNAAVFCRDDEFGGSARVPRNSWDGNLQIRRHYSHPSFRKSFDDSRKKRQKESGGRKAAAAPIY
        MLRQWITCRAVDANDAVLINNLSPKASPNPP LEKS NAAVFCRDD+FG SARVPRNSWDGNLQIRRHYSHPSFRKSFD SRKKRQKESG RKAA AP Y
Subjt:  MLRQWITCRAVDANDAVLINNLSPKASPNPPSLEKSRNAAVFCRDDEFGGSARVPRNSWDGNLQIRRHYSHPSFRKSFDDSRKKRQKESGGRKAAAAPIY

Query:  KPMAGPNCSLCGKTFRPEKMHSHMKSCRGLRSLTKTASTSNKTTSSKSTTTPTSDKDSASTYLLTH
        KPMAGPNCSLCGKTFRPEKMHSHMKSCRGLRSLTKTASTSNKTTSS STTTPTSDKDSASTYLLTH
Subjt:  KPMAGPNCSLCGKTFRPEKMHSHMKSCRGLRSLTKTASTSNKTTSSKSTTTPTSDKDSASTYLLTH

TrEMBL top hitse value%identityAlignment
A0A6J1CUY7 protein UPSTREAM OF FLC isoform X21.6e-4669.23Show/hide
Query:  MLRQWITCRAVDANDAVLINNLSPKASPNPPSL-EKSRNAAVFCRDDEFGGSARVPRNSWDGNLQIRRHYSHPSFRKSFDDSRKKRQKESGGRK-AAAAP
        +LRQWITC AVD ND VLI N S  A+ +PP+L EK +N AV CRDD  GGSARV R+SWDG L I RH +  + RKSFD+ RKKR KESGGRK AAA  
Subjt:  MLRQWITCRAVDANDAVLINNLSPKASPNPPSL-EKSRNAAVFCRDDEFGGSARVPRNSWDGNLQIRRHYSHPSFRKSFDDSRKKRQKESGGRK-AAAAP

Query:  IYKPMAGPNCSLCGKTFRPEKMHSHMKSCRGLRSLTKTASTSNKTTSSKSTTTPTS
         +K M GPNCS CGK+F+PEKMH+HMKSCRGL+SL KT STSNKTTSSKSTTT TS
Subjt:  IYKPMAGPNCSLCGKTFRPEKMHSHMKSCRGLRSLTKTASTSNKTTSSKSTTTPTS

A0A6J1CV58 protein UPSTREAM OF FLC isoform X11.6e-4669.23Show/hide
Query:  MLRQWITCRAVDANDAVLINNLSPKASPNPPSL-EKSRNAAVFCRDDEFGGSARVPRNSWDGNLQIRRHYSHPSFRKSFDDSRKKRQKESGGRK-AAAAP
        +LRQWITC AVD ND VLI N S  A+ +PP+L EK +N AV CRDD  GGSARV R+SWDG L I RH +  + RKSFD+ RKKR KESGGRK AAA  
Subjt:  MLRQWITCRAVDANDAVLINNLSPKASPNPPSL-EKSRNAAVFCRDDEFGGSARVPRNSWDGNLQIRRHYSHPSFRKSFDDSRKKRQKESGGRK-AAAAP

Query:  IYKPMAGPNCSLCGKTFRPEKMHSHMKSCRGLRSLTKTASTSNKTTSSKSTTTPTS
         +K M GPNCS CGK+F+PEKMH+HMKSCRGL+SL KT STSNKTTSSKSTTT TS
Subjt:  IYKPMAGPNCSLCGKTFRPEKMHSHMKSCRGLRSLTKTASTSNKTTSSKSTTTPTS

A0A6J1GPF9 uncharacterized protein LOC1114563251.5e-86100Show/hide
Query:  MLRQWITCRAVDANDAVLINNLSPKASPNPPSLEKSRNAAVFCRDDEFGGSARVPRNSWDGNLQIRRHYSHPSFRKSFDDSRKKRQKESGGRKAAAAPIY
        MLRQWITCRAVDANDAVLINNLSPKASPNPPSLEKSRNAAVFCRDDEFGGSARVPRNSWDGNLQIRRHYSHPSFRKSFDDSRKKRQKESGGRKAAAAPIY
Subjt:  MLRQWITCRAVDANDAVLINNLSPKASPNPPSLEKSRNAAVFCRDDEFGGSARVPRNSWDGNLQIRRHYSHPSFRKSFDDSRKKRQKESGGRKAAAAPIY

Query:  KPMAGPNCSLCGKTFRPEKMHSHMKSCRGLRSLTKTASTSNKTTSSKSTTTPTSDKDSASTYLLTH
        KPMAGPNCSLCGKTFRPEKMHSHMKSCRGLRSLTKTASTSNKTTSSKSTTTPTSDKDSASTYLLTH
Subjt:  KPMAGPNCSLCGKTFRPEKMHSHMKSCRGLRSLTKTASTSNKTTSSKSTTTPTSDKDSASTYLLTH

A0A6J1H7K3 protein UPSTREAM OF FLC-like2.8e-5169.28Show/hide
Query:  MLRQWITCRAVDANDAVLINNLSPKASPNPPSLEKSRNAAVFCRDDEFGGSARVPRNSWDGNLQIRRHYSHPSFRKSFDDSRKKRQKESGGRKAAAAPIY
        MLRQWITC A+D +D+VLI N SPK S    SLEK +N AVFCRDDE GGSARV RNSWDGNL++   +S  + RKS DDSRKKRQKESGG K A    +
Subjt:  MLRQWITCRAVDANDAVLINNLSPKASPNPPSLEKSRNAAVFCRDDEFGGSARVPRNSWDGNLQIRRHYSHPSFRKSFDDSRKKRQKESGGRKAAAAPIY

Query:  KPMAGPNCSLCGKTFRPEKMHSHMKSCRGLRSLTKTASTSNKTTSSKSTTTPTSDKDSASTYLLTH
        KPMAGPNCSLCGK+F+PEKMHSHMKSC+GL+SLTKTA+TS   T SKSTT  +SDK+  STYLLT+
Subjt:  KPMAGPNCSLCGKTFRPEKMHSHMKSCRGLRSLTKTASTSNKTTSSKSTTTPTSDKDSASTYLLTH

A0A6J1JS66 uncharacterized protein LOC1114884282.0e-7892.17Show/hide
Query:  MLRQWITCRAVDANDAVLINNLSPKASPNPPSLEKSRNAAVFCRDDEFGGSARVPRNSWDGNLQIRRHYSHPSFRKSFDDSRKKRQKESGGRKAAAAPIY
        MLRQWITCR VDANDAVLINNLSP+ASPNP   EKS NAAVFCRDDEFGGSARVPRNSWDGNLQIRRHYSHPSFRKS DDSRKKRQKES GRK AA P Y
Subjt:  MLRQWITCRAVDANDAVLINNLSPKASPNPPSLEKSRNAAVFCRDDEFGGSARVPRNSWDGNLQIRRHYSHPSFRKSFDDSRKKRQKESGGRKAAAAPIY

Query:  KPMAGPNCSLCGKTFRPEKMHSHMKSCRGLRSLTKTASTSNKTTSSKSTTTPTSDKDSASTYLLTH
        KP+AGP+CSLCGKTFRPEKMHSHMKSCRGLRSLTKTASTSNKTTSSKSTTTPTSDKDSASTYLLTH
Subjt:  KPMAGPNCSLCGKTFRPEKMHSHMKSCRGLRSLTKTASTSNKTTSSKSTTTPTSDKDSASTYLLTH

SwissProt top hitse value%identityAlignment
Q9SYJ8 Protein SOSEKI 13.6e-0834.81Show/hide
Query:  MLRQWITCRAVDANDAVLINNLSPKASPNPPSLEKSRNAAVFCRDDEFGGSARVPRNSWDGNLQIRRHYSHPSFRKSFDD--SRKKRQKESGGRKAAAAP
        +LR  + C  +D NDAVL+             L KSR+ A       FG        +W+   + + H  H + RKSF+   S  K ++     K   AP
Subjt:  MLRQWITCRAVDANDAVLINNLSPKASPNPPSLEKSRNAAVFCRDDEFGGSARVPRNSWDGNLQIRRHYSHPSFRKSFDD--SRKKRQKESGGRKAAAAP

Query:  IYKPMAGPNCSLCGKTFRPEKMHSHMKSCRGLRSLTKTASTSNKTTSSKSTTTPTSDK
          KP   P CS CGK F+PEKMHSHMK CRG+    K +S +N   +S +T  P   +
Subjt:  IYKPMAGPNCSLCGKTFRPEKMHSHMKSCRGLRSLTKTASTSNKTTSSKSTTTPTSDK

Arabidopsis top hitse value%identityAlignment
AT1G05577.1 Domain of unknown function (DUF966)2.6e-0934.81Show/hide
Query:  MLRQWITCRAVDANDAVLINNLSPKASPNPPSLEKSRNAAVFCRDDEFGGSARVPRNSWDGNLQIRRHYSHPSFRKSFDD--SRKKRQKESGGRKAAAAP
        +LR  + C  +D NDAVL+             L KSR+ A       FG        +W+   + + H  H + RKSF+   S  K ++     K   AP
Subjt:  MLRQWITCRAVDANDAVLINNLSPKASPNPPSLEKSRNAAVFCRDDEFGGSARVPRNSWDGNLQIRRHYSHPSFRKSFDD--SRKKRQKESGGRKAAAAP

Query:  IYKPMAGPNCSLCGKTFRPEKMHSHMKSCRGLRSLTKTASTSNKTTSSKSTTTPTSDK
          KP   P CS CGK F+PEKMHSHMK CRG+    K +S +N   +S +T  P   +
Subjt:  IYKPMAGPNCSLCGKTFRPEKMHSHMKSCRGLRSLTKTASTSNKTTSSKSTTTPTSDK


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCTTCGCCAGTGGATCACGTGCAGAGCAGTAGATGCAAACGACGCTGTTTTGATCAACAATCTATCTCCAAAAGCTTCACCGAATCCGCCCTCATTGGAAAAATCCAG
AAACGCCGCCGTGTTTTGCAGAGACGACGAGTTCGGTGGCTCCGCCCGAGTTCCTCGGAATTCTTGGGATGGGAACCTCCAAATCCGCCGCCATTACAGCCACCCAAGTT
TTCGGAAAAGCTTCGACGATTCAAGGAAGAAGAGGCAGAAGGAGAGCGGCGGAAGAAAGGCGGCAGCCGCCCCGATTTACAAGCCAATGGCAGGACCGAACTGCTCGTTA
TGTGGGAAGACTTTCAGGCCGGAGAAGATGCATTCACACATGAAATCGTGTAGAGGACTCAGGTCTCTGACCAAGACTGCTTCAACGTCCAACAAAACGACATCGTCTAA
GTCAACCACGACACCAACTTCCGACAAGGATTCGGCTTCCACCTACCTGTTGACCCACTGA
mRNA sequenceShow/hide mRNA sequence
ATGCTTCGCCAGTGGATCACGTGCAGAGCAGTAGATGCAAACGACGCTGTTTTGATCAACAATCTATCTCCAAAAGCTTCACCGAATCCGCCCTCATTGGAAAAATCCAG
AAACGCCGCCGTGTTTTGCAGAGACGACGAGTTCGGTGGCTCCGCCCGAGTTCCTCGGAATTCTTGGGATGGGAACCTCCAAATCCGCCGCCATTACAGCCACCCAAGTT
TTCGGAAAAGCTTCGACGATTCAAGGAAGAAGAGGCAGAAGGAGAGCGGCGGAAGAAAGGCGGCAGCCGCCCCGATTTACAAGCCAATGGCAGGACCGAACTGCTCGTTA
TGTGGGAAGACTTTCAGGCCGGAGAAGATGCATTCACACATGAAATCGTGTAGAGGACTCAGGTCTCTGACCAAGACTGCTTCAACGTCCAACAAAACGACATCGTCTAA
GTCAACCACGACACCAACTTCCGACAAGGATTCGGCTTCCACCTACCTGTTGACCCACTGAGAATCTCATGGTGTAAAGCTACGAACAATATTGTACTATTTGAATGTTT
GTGCGGAAGAATTTGC
Protein sequenceShow/hide protein sequence
MLRQWITCRAVDANDAVLINNLSPKASPNPPSLEKSRNAAVFCRDDEFGGSARVPRNSWDGNLQIRRHYSHPSFRKSFDDSRKKRQKESGGRKAAAAPIYKPMAGPNCSL
CGKTFRPEKMHSHMKSCRGLRSLTKTASTSNKTTSSKSTTTPTSDKDSASTYLLTH