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CmoCh17G008930 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh17G008930
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
DescriptionSmall heat shock protein HSP20
Genome locationCmo_Chr17:8099259..8099642
RNA-Seq ExpressionCmoCh17G008930
SyntenyCmoCh17G008930
Gene Ontology termsGO:0016021 - integral component of membrane (cellular component)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6575655.1 E3 ubiquitin-protein ligase RING1, partial [Cucurbita argyrosperma subsp. sororia]1.2e-6498.43Show/hide
Query:  MAVNGDSSTSNSDSQPTFPLHLCFFFLILFMFLAFSWHSTYESAVEGVFDQLKLLLIVSPLLLLLLLHWLSNGENGRLPPLVPLPEKDSLHRAGGTPWGV
        MAVNGDSSTSNSDSQPTFPLHLCFFFLILFMFLAFSWHSTYESAVEGVFDQLKLLLIVSPLLLLLL+HWLSNGENGRLPPLV LPEKDSLHRAGGTPWGV
Subjt:  MAVNGDSSTSNSDSQPTFPLHLCFFFLILFMFLAFSWHSTYESAVEGVFDQLKLLLIVSPLLLLLLLHWLSNGENGRLPPLVPLPEKDSLHRAGGTPWGV

Query:  GFMLVILLFMISYQSYFQERWFPLLSR
        GFMLVILLFMISYQSYFQERWFPLLSR
Subjt:  GFMLVILLFMISYQSYFQERWFPLLSR

XP_022953918.1 uncharacterized protein LOC111456323 [Cucurbita moschata]6.3e-66100Show/hide
Query:  MAVNGDSSTSNSDSQPTFPLHLCFFFLILFMFLAFSWHSTYESAVEGVFDQLKLLLIVSPLLLLLLLHWLSNGENGRLPPLVPLPEKDSLHRAGGTPWGV
        MAVNGDSSTSNSDSQPTFPLHLCFFFLILFMFLAFSWHSTYESAVEGVFDQLKLLLIVSPLLLLLLLHWLSNGENGRLPPLVPLPEKDSLHRAGGTPWGV
Subjt:  MAVNGDSSTSNSDSQPTFPLHLCFFFLILFMFLAFSWHSTYESAVEGVFDQLKLLLIVSPLLLLLLLHWLSNGENGRLPPLVPLPEKDSLHRAGGTPWGV

Query:  GFMLVILLFMISYQSYFQERWFPLLSR
        GFMLVILLFMISYQSYFQERWFPLLSR
Subjt:  GFMLVILLFMISYQSYFQERWFPLLSR

XP_022991944.1 uncharacterized protein LOC111488435 [Cucurbita maxima]3.4e-6496.06Show/hide
Query:  MAVNGDSSTSNSDSQPTFPLHLCFFFLILFMFLAFSWHSTYESAVEGVFDQLKLLLIVSPLLLLLLLHWLSNGENGRLPPLVPLPEKDSLHRAGGTPWGV
        MAVNGDSST+NSDSQPTFPLHLCFFFLILFMFLAFSW+STYESAVEGVFDQLKLLLI+SPLLLLLL+HWLSNGENGRLPPLVPLPEKDSLHRAGGTPWGV
Subjt:  MAVNGDSSTSNSDSQPTFPLHLCFFFLILFMFLAFSWHSTYESAVEGVFDQLKLLLIVSPLLLLLLLHWLSNGENGRLPPLVPLPEKDSLHRAGGTPWGV

Query:  GFMLVILLFMISYQSYFQERWFPLLSR
        GFMLVILLFMISYQSYFQERWFP+LSR
Subjt:  GFMLVILLFMISYQSYFQERWFPLLSR

XP_023548678.1 uncharacterized protein LOC111807266 [Cucurbita pepo subsp. pepo]5.3e-6598.43Show/hide
Query:  MAVNGDSSTSNSDSQPTFPLHLCFFFLILFMFLAFSWHSTYESAVEGVFDQLKLLLIVSPLLLLLLLHWLSNGENGRLPPLVPLPEKDSLHRAGGTPWGV
        MAVNGDSS SNSDSQPTFPLHLCFFFLILFMFLAFSWHSTYESAVEGVFDQLKLLLIVSPLLLLLL+HWLSNGENGRLPPLVPLPEKDSLHRAGGTPWGV
Subjt:  MAVNGDSSTSNSDSQPTFPLHLCFFFLILFMFLAFSWHSTYESAVEGVFDQLKLLLIVSPLLLLLLLHWLSNGENGRLPPLVPLPEKDSLHRAGGTPWGV

Query:  GFMLVILLFMISYQSYFQERWFPLLSR
        GFMLVILLFMISYQSYFQERWFPLLSR
Subjt:  GFMLVILLFMISYQSYFQERWFPLLSR

XP_038898802.1 uncharacterized protein LOC120086305 [Benincasa hispida]7.7e-5685.83Show/hide
Query:  MAVNGDSSTSNSDSQPTFPLHLCFFFLILFMFLAFSWHSTYESAVEGVFDQLKLLLIVSPLLLLLLLHWLSNGENGRLPPLVPLPEKDSLHRAGGTPWGV
        MA N  SS +NS SQPTFPLHLCFFFLIL MFL+FSW+S YESAVEGVFDQLKLLLIVSPLLLLL++HWLSN ENGRLP L+PLPE+DSLHRAGGTPWGV
Subjt:  MAVNGDSSTSNSDSQPTFPLHLCFFFLILFMFLAFSWHSTYESAVEGVFDQLKLLLIVSPLLLLLLLHWLSNGENGRLPPLVPLPEKDSLHRAGGTPWGV

Query:  GFMLVILLFMISYQSYFQERWFPLLSR
        GF+LV+LLFMISYQSYFQERWFPLLSR
Subjt:  GFMLVILLFMISYQSYFQERWFPLLSR

TrEMBL top hitse value%identityAlignment
A0A0A0K9W6 Uncharacterized protein9.5e-5284.75Show/hide
Query:  SNSDSQPTFPLHLCFFFLILFMFLAFSWHSTYESAVEGVFDQLKLLLIVSPLLLLLLLHWLSNGENGRLPPLVPLPEKDSLHRAGGTPWGVGFMLVILLF
        +N+ SQPTFPLHLCFFFLIL MFL+FSW+S YESAVE VFDQLKLLLIVSPLLLLLL+HWLSN ++G LP L+PLPEKDSLHRAGGTPWGVGF+LV+LLF
Subjt:  SNSDSQPTFPLHLCFFFLILFMFLAFSWHSTYESAVEGVFDQLKLLLIVSPLLLLLLLHWLSNGENGRLPPLVPLPEKDSLHRAGGTPWGVGFMLVILLF

Query:  MISYQSYFQERWFPLLSR
        M+SYQSYFQERWFPLLSR
Subjt:  MISYQSYFQERWFPLLSR

A0A1S3CE82 uncharacterized protein LOC1034998796.1e-5187.72Show/hide
Query:  SQPTFPLHLCFFFLILFMFLAFSWHSTYESAVEGVFDQLKLLLIVSPLLLLLLLHWLSNGENGRLPPLVPLPEKDSLHRAGGTPWGVGFMLVILLFMISY
        SQPTFPLHLCFFFLIL MFL+FSW+S YESAVE VFDQLKLLLIVSPLLLLLL+HWLSN +NG LP L+PLPEK+SLHRAGGTPWGVGF+LV+LLFMISY
Subjt:  SQPTFPLHLCFFFLILFMFLAFSWHSTYESAVEGVFDQLKLLLIVSPLLLLLLLHWLSNGENGRLPPLVPLPEKDSLHRAGGTPWGVGFMLVILLFMISY

Query:  QSYFQERWFPLLSR
        QSYFQERWFPLLSR
Subjt:  QSYFQERWFPLLSR

A0A6J1DCG1 uncharacterized protein LOC1110197474.3e-5281.1Show/hide
Query:  MAVNGDSSTSNSDSQPTFPLHLCFFFLILFMFLAFSWHSTYESAVEGVFDQLKLLLIVSPLLLLLLLHWLSNGENGRLPPLVPLPEKDSLHRAGGTPWGV
        MAV  +S     +SQP+FPLHLCFFFLIL MFL FSW+S YESAV+GVFDQLKLLLI SPLLLLL +HWLSN +NGRLPPL+PLPEKDSLHRAG TPWGV
Subjt:  MAVNGDSSTSNSDSQPTFPLHLCFFFLILFMFLAFSWHSTYESAVEGVFDQLKLLLIVSPLLLLLLLHWLSNGENGRLPPLVPLPEKDSLHRAGGTPWGV

Query:  GFMLVILLFMISYQSYFQERWFPLLSR
        GF+LV+LLFMISYQSYFQERWFPLLSR
Subjt:  GFMLVILLFMISYQSYFQERWFPLLSR

A0A6J1GPN5 uncharacterized protein LOC1114563233.0e-66100Show/hide
Query:  MAVNGDSSTSNSDSQPTFPLHLCFFFLILFMFLAFSWHSTYESAVEGVFDQLKLLLIVSPLLLLLLLHWLSNGENGRLPPLVPLPEKDSLHRAGGTPWGV
        MAVNGDSSTSNSDSQPTFPLHLCFFFLILFMFLAFSWHSTYESAVEGVFDQLKLLLIVSPLLLLLLLHWLSNGENGRLPPLVPLPEKDSLHRAGGTPWGV
Subjt:  MAVNGDSSTSNSDSQPTFPLHLCFFFLILFMFLAFSWHSTYESAVEGVFDQLKLLLIVSPLLLLLLLHWLSNGENGRLPPLVPLPEKDSLHRAGGTPWGV

Query:  GFMLVILLFMISYQSYFQERWFPLLSR
        GFMLVILLFMISYQSYFQERWFPLLSR
Subjt:  GFMLVILLFMISYQSYFQERWFPLLSR

A0A6J1JW83 uncharacterized protein LOC1114884351.7e-6496.06Show/hide
Query:  MAVNGDSSTSNSDSQPTFPLHLCFFFLILFMFLAFSWHSTYESAVEGVFDQLKLLLIVSPLLLLLLLHWLSNGENGRLPPLVPLPEKDSLHRAGGTPWGV
        MAVNGDSST+NSDSQPTFPLHLCFFFLILFMFLAFSW+STYESAVEGVFDQLKLLLI+SPLLLLLL+HWLSNGENGRLPPLVPLPEKDSLHRAGGTPWGV
Subjt:  MAVNGDSSTSNSDSQPTFPLHLCFFFLILFMFLAFSWHSTYESAVEGVFDQLKLLLIVSPLLLLLLLHWLSNGENGRLPPLVPLPEKDSLHRAGGTPWGV

Query:  GFMLVILLFMISYQSYFQERWFPLLSR
        GFMLVILLFMISYQSYFQERWFP+LSR
Subjt:  GFMLVILLFMISYQSYFQERWFPLLSR

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT2G21180.1 unknown protein8.0e-1132.54Show/hide
Query:  SSTSNSDSQPTFPLHLCFFFLILFMFLAFSWHSTYESAVEGVFDQLKLLLIVSPLLLLLLLHWLSNGENGRLPPLVPLPEKDSLHR-----------AGG
        SS  +S S    P  +     +  +FL  SW+ + E A E   +Q+   L++ PL L++L+ WLS+ EN    P   L    S  R            G 
Subjt:  SSTSNSDSQPTFPLHLCFFFLILFMFLAFSWHSTYESAVEGVFDQLKLLLIVSPLLLLLLLHWLSNGENGRLPPLVPLPEKDSLHR-----------AGG

Query:  TPWGVGFMLVILLFMISYQSYFQERW
        +PWGV  ++V+LL ++ YQS F E W
Subjt:  TPWGVGFMLVILLFMISYQSYFQERW

AT2G31940.1 unknown protein5.7e-3357.76Show/hide
Query:  NSDSQPTFPLHLCFFFLILFMFLAFSWHSTYESAVEGVFDQLKLLLIVSPLLLLLLLHWLSN--GENGRLPPLVPLPEKDSLHRAGGTPWGVGFMLVILL
        + +  P  PLHLC F LIL MF+  SW+++YE  +EG   Q KL L+ SPLLLLL +H+LS+  G  G +  L+ L E++SL+RAGGTPWGV FMLV L 
Subjt:  NSDSQPTFPLHLCFFFLILFMFLAFSWHSTYESAVEGVFDQLKLLLIVSPLLLLLLLHWLSN--GENGRLPPLVPLPEKDSLHRAGGTPWGVGFMLVILL

Query:  FMISYQSYFQERWFPL
        FM+SYQS FQERWFPL
Subjt:  FMISYQSYFQERWFPL

AT3G06890.1 unknown protein3.9e-0533.9Show/hide
Query:  LIVSPLLLLLLLHWLSNGENGRLPPLVPLPEKDSLHRAGGTPWGVGFMLVILLFMISYQ
        L++ P++LLL + +LS+     +  +    E +S+HR  G+P GV   LV++LF++ Y+
Subjt:  LIVSPLLLLLLLHWLSNGENGRLPPLVPLPEKDSLHRAGGTPWGVGFMLVILLFMISYQ

AT5G19875.1 unknown protein3.2e-2855.34Show/hide
Query:  HLCFFFLILFMFLAFSWHSTYESAVEGVFDQLKLLLIVSPLLLLLLLHWLSNGENGRLPPLVPLPEKDSLHRAGGTPWGVGFMLVILLFMISYQSYFQER
        HLCF F+++F  L+F+W+  +ES +E   D LKL+ I +PL LLLL+H+ S G    L   VP PE+DS+HRAG +PWGV  +LV++LFM+SYQS FQER
Subjt:  HLCFFFLILFMFLAFSWHSTYESAVEGVFDQLKLLLIVSPLLLLLLLHWLSNGENGRLPPLVPLPEKDSLHRAGGTPWGVGFMLVILLFMISYQSYFQER

Query:  WFP
        WFP
Subjt:  WFP

AT5G42146.1 unknown protein2.4e-0733.94Show/hide
Query:  PLHLCFFFLILFMFLAFSWHSTYESAVEGVFDQLKLLLIVSPLLLLLLLHWLSNGEN--GRLPPLVPLPEKDSLHRAGGTPWGVGFMLVILLFMISYQSY
        PL L     I+ + L  S +  Y+  VE     LKL ++  P+L + +L  LS       +    V   +  SL   G  PWGV  ML++LL ++S QSY
Subjt:  PLHLCFFFLILFMFLAFSWHSTYESAVEGVFDQLKLLLIVSPLLLLLLLHWLSNGEN--GRLPPLVPLPEKDSLHRAGGTPWGVGFMLVILLFMISYQSY

Query:  FQERWFPLL
        F   W+P L
Subjt:  FQERWFPLL


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCTGTCAATGGAGACTCCTCCACCTCAAATTCCGACTCTCAGCCCACTTTTCCTCTTCATCTCTGCTTCTTCTTTCTCATCCTCTTCATGTTCTTGGCCTTCTCTTG
GCACTCGACTTACGAGTCCGCTGTTGAAGGCGTTTTCGATCAGCTCAAGCTTCTTCTCATCGTCTCGCCACTCCTCCTCCTCCTCCTCCTCCACTGGCTCTCCAATGGTG
AAAACGGCCGCCTACCGCCCCTCGTCCCCCTACCGGAAAAGGACTCGCTCCACCGCGCTGGAGGGACACCGTGGGGAGTTGGGTTTATGTTGGTTATTCTTCTTTTCATG
ATCTCTTACCAATCTTACTTCCAAGAACGATGGTTTCCTCTGTTGAGTCGGTGA
mRNA sequenceShow/hide mRNA sequence
ATGGCTGTCAATGGAGACTCCTCCACCTCAAATTCCGACTCTCAGCCCACTTTTCCTCTTCATCTCTGCTTCTTCTTTCTCATCCTCTTCATGTTCTTGGCCTTCTCTTG
GCACTCGACTTACGAGTCCGCTGTTGAAGGCGTTTTCGATCAGCTCAAGCTTCTTCTCATCGTCTCGCCACTCCTCCTCCTCCTCCTCCTCCACTGGCTCTCCAATGGTG
AAAACGGCCGCCTACCGCCCCTCGTCCCCCTACCGGAAAAGGACTCGCTCCACCGCGCTGGAGGGACACCGTGGGGAGTTGGGTTTATGTTGGTTATTCTTCTTTTCATG
ATCTCTTACCAATCTTACTTCCAAGAACGATGGTTTCCTCTGTTGAGTCGGTGA
Protein sequenceShow/hide protein sequence
MAVNGDSSTSNSDSQPTFPLHLCFFFLILFMFLAFSWHSTYESAVEGVFDQLKLLLIVSPLLLLLLLHWLSNGENGRLPPLVPLPEKDSLHRAGGTPWGVGFMLVILLFM
ISYQSYFQERWFPLLSR