; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

CmoCh17G008950 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh17G008950
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
DescriptionClp R domain-containing protein
Genome locationCmo_Chr17:8106117..8106380
RNA-Seq ExpressionCmoCh17G008950
SyntenyCmoCh17G008950
Gene Ontology termsGO:0016021 - integral component of membrane (cellular component)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6575656.1 hypothetical protein SDJN03_26295, partial [Cucurbita argyrosperma subsp. sororia]7.9e-3697.7Show/hide
Query:  MMMEIRHLEGMAETAAVFLLVQILVYLILSKSSHVFSKNTKRSLSFRQVRSLSIRRIMAALSDFPSGTGDPDESRGECGTMFDEGSS
        MMMEIRHLEGMAETAAVFLLVQILVYLILSKSSHVFSKNTKRSLSFRQVRSL+IRRIMAALSDFPSG GDPDESRGECGTMFDEGSS
Subjt:  MMMEIRHLEGMAETAAVFLLVQILVYLILSKSSHVFSKNTKRSLSFRQVRSLSIRRIMAALSDFPSGTGDPDESRGECGTMFDEGSS

XP_022147203.1 uncharacterized protein LOC111016209 [Momordica charantia]1.4e-1970.53Show/hide
Query:  MMMEIRHLEGMAETAAVFLLVQILVYLILSKSSHVFSKNTKRSLSFRQVRSLSIRRIMAALSDFPSG--TGDPDES------RGECGTMFDEGSS
        M MEI  LEG+  TAAVF LVQILVYLILSKSS VFSKNTKRSLSFR VRSLSIRRI+AALSD PSG     P+ES       GEC  MF +GSS
Subjt:  MMMEIRHLEGMAETAAVFLLVQILVYLILSKSSHVFSKNTKRSLSFRQVRSLSIRRIMAALSDFPSG--TGDPDES------RGECGTMFDEGSS

XP_022954080.1 uncharacterized protein LOC111456452 [Cucurbita moschata]7.1e-37100Show/hide
Query:  MMMEIRHLEGMAETAAVFLLVQILVYLILSKSSHVFSKNTKRSLSFRQVRSLSIRRIMAALSDFPSGTGDPDESRGECGTMFDEGSS
        MMMEIRHLEGMAETAAVFLLVQILVYLILSKSSHVFSKNTKRSLSFRQVRSLSIRRIMAALSDFPSGTGDPDESRGECGTMFDEGSS
Subjt:  MMMEIRHLEGMAETAAVFLLVQILVYLILSKSSHVFSKNTKRSLSFRQVRSLSIRRIMAALSDFPSGTGDPDESRGECGTMFDEGSS

XP_022991948.1 uncharacterized protein LOC111488440 [Cucurbita maxima]1.4e-2998.68Show/hide
Query:  MMMEIRHLEGMAETAAVFLLVQILVYLILSKSSHVFSKNTKRSLSFRQVRSLSIRRIMAALSDFPSGTGDPDESRG
        MMMEIRHLEGMAETAAVFLLVQILVYLILSKSSHVFSKNTKRSLSFRQVRSLSIRRIMAALSDFPSG GDPDESRG
Subjt:  MMMEIRHLEGMAETAAVFLLVQILVYLILSKSSHVFSKNTKRSLSFRQVRSLSIRRIMAALSDFPSGTGDPDESRG

XP_023548863.1 uncharacterized protein LOC111807384 [Cucurbita pepo subsp. pepo]1.6e-3698.85Show/hide
Query:  MMMEIRHLEGMAETAAVFLLVQILVYLILSKSSHVFSKNTKRSLSFRQVRSLSIRRIMAALSDFPSGTGDPDESRGECGTMFDEGSS
        MMMEIRHLEGMAETAAVFLLVQILVYLILSKSSHVFSKNTKRSLSFRQVRSL+IRRIMAALSDFPSGTGDPDESRGECGTMFDEGSS
Subjt:  MMMEIRHLEGMAETAAVFLLVQILVYLILSKSSHVFSKNTKRSLSFRQVRSLSIRRIMAALSDFPSGTGDPDESRGECGTMFDEGSS

TrEMBL top hitse value%identityAlignment
A0A1U7YVL7 uncharacterized protein LOC1045874489.5e-1163.77Show/hide
Query:  LEGMAETAAVFLLVQILVYLILSKSSHVFSKNTKRSLSFRQVRSLSIRRIMAALSDFPSGTGDPDESRG
        LE M     +FLLVQ LVYLILSKSS++FSKN  RS+SFR  RS SIRR +AALSD P+G+  P  SRG
Subjt:  LEGMAETAAVFLLVQILVYLILSKSSHVFSKNTKRSLSFRQVRSLSIRRIMAALSDFPSGTGDPDESRG

A0A660KP35 Uncharacterized protein3.6e-1061.76Show/hide
Query:  MMMEIRHL-EGMAETAAVFLLVQILVYLILSKSSHVFSKNTKRSLSFRQVRSLSIRRIMAALSDFPSG
        M+MEI  L + M    A+FLLVQ+LVYLILS SS +FSKN +RSLSFR  RS+SI R++A LSD P+G
Subjt:  MMMEIRHL-EGMAETAAVFLLVQILVYLILSKSSHVFSKNTKRSLSFRQVRSLSIRRIMAALSDFPSG

A0A6J1D0M4 uncharacterized protein LOC1110162096.6e-2070.53Show/hide
Query:  MMMEIRHLEGMAETAAVFLLVQILVYLILSKSSHVFSKNTKRSLSFRQVRSLSIRRIMAALSDFPSG--TGDPDES------RGECGTMFDEGSS
        M MEI  LEG+  TAAVF LVQILVYLILSKSS VFSKNTKRSLSFR VRSLSIRRI+AALSD PSG     P+ES       GEC  MF +GSS
Subjt:  MMMEIRHLEGMAETAAVFLLVQILVYLILSKSSHVFSKNTKRSLSFRQVRSLSIRRIMAALSDFPSG--TGDPDES------RGECGTMFDEGSS

A0A6J1GRF7 uncharacterized protein LOC1114564523.5e-37100Show/hide
Query:  MMMEIRHLEGMAETAAVFLLVQILVYLILSKSSHVFSKNTKRSLSFRQVRSLSIRRIMAALSDFPSGTGDPDESRGECGTMFDEGSS
        MMMEIRHLEGMAETAAVFLLVQILVYLILSKSSHVFSKNTKRSLSFRQVRSLSIRRIMAALSDFPSGTGDPDESRGECGTMFDEGSS
Subjt:  MMMEIRHLEGMAETAAVFLLVQILVYLILSKSSHVFSKNTKRSLSFRQVRSLSIRRIMAALSDFPSGTGDPDESRGECGTMFDEGSS

A0A6J1JXQ0 uncharacterized protein LOC1114884407.0e-3098.68Show/hide
Query:  MMMEIRHLEGMAETAAVFLLVQILVYLILSKSSHVFSKNTKRSLSFRQVRSLSIRRIMAALSDFPSGTGDPDESRG
        MMMEIRHLEGMAETAAVFLLVQILVYLILSKSSHVFSKNTKRSLSFRQVRSLSIRRIMAALSDFPSG GDPDESRG
Subjt:  MMMEIRHLEGMAETAAVFLLVQILVYLILSKSSHVFSKNTKRSLSFRQVRSLSIRRIMAALSDFPSGTGDPDESRG

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G05575.1 unknown protein3.2e-1160.66Show/hide
Query:  EGMAETAAVFLLVQILVYLILSKSSHVF--SKNTKRSLSFRQVRSLSIRRIMAALSDFPSG
        EGM    ++F L+Q LVYLILSKSS VF  SK  KR+ SFR  RS+SIRRI+A L D P+G
Subjt:  EGMAETAAVFLLVQILVYLILSKSSHVF--SKNTKRSLSFRQVRSLSIRRIMAALSDFPSG

AT2G31945.1 unknown protein4.7e-1050.63Show/hide
Query:  MAETAAVFLLVQILVYLILSKSSHVF--SKNTKRSLSFRQVRSLSIRRIMAALSDFPSGTGDPDESRGECGTMFDEGSS
        M    A+F LVQ LVYLIL KSS VF  S + KR+ SFR +RS+SIRRI+AAL D P+G      S G   +  DE ++
Subjt:  MAETAAVFLLVQILVYLILSKSSHVF--SKNTKRSLSFRQVRSLSIRRIMAALSDFPSGTGDPDESRGECGTMFDEGSS


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGATGATGGAGATTAGGCATTTGGAAGGAATGGCTGAGACTGCAGCCGTGTTCCTCCTTGTGCAGATCCTGGTTTATCTAATTCTCTCTAAATCTTCCCATGTC
TTCTCTAAGAACACGAAGAGGTCTCTTAGTTTCAGACAGGTCCGATCTCTGAGTATCCGTCGGATTATGGCAGCTCTCTCCGATTTCCCCTCCGGCACCGGCGAC
CCAGACGAAAGTCGTGGGGAATGTGGAACCATGTTTGATGAAGGCAGTTCTTAA
mRNA sequenceShow/hide mRNA sequence
ATGATGATGGAGATTAGGCATTTGGAAGGAATGGCTGAGACTGCAGCCGTGTTCCTCCTTGTGCAGATCCTGGTTTATCTAATTCTCTCTAAATCTTCCCATGTC
TTCTCTAAGAACACGAAGAGGTCTCTTAGTTTCAGACAGGTCCGATCTCTGAGTATCCGTCGGATTATGGCAGCTCTCTCCGATTTCCCCTCCGGCACCGGCGAC
CCAGACGAAAGTCGTGGGGAATGTGGAACCATGTTTGATGAAGGCAGTTCTTAA
Protein sequenceShow/hide protein sequence
MMMEIRHLEGMAETAAVFLLVQILVYLILSKSSHVFSKNTKRSLSFRQVRSLSIRRIMAALSDFPSGTGDPDESRGECGTMFDEGSS