; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

CmoCh17G008980 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh17G008980
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
DescriptionCCR4-NOT transcription complex subunit like
Genome locationCmo_Chr17:8121994..8124445
RNA-Seq ExpressionCmoCh17G008980
SyntenyCmoCh17G008980
Gene Ontology termsGO:0016021 - integral component of membrane (cellular component)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6575660.1 hypothetical protein SDJN03_26299, partial [Cucurbita argyrosperma subsp. sororia]2.6e-5698.41Show/hide
Query:  MASIFSAPPSRLNLTSRPSLIHGAVLPSSIAGIQYHSNAFPIPSFRYRNTKGLELRQRSFSITASNSSDGNSIKEENGSSKASSDAQGPPFLTILAGIFV
        MASIF+APPSRLNLTSRPSLIHGAVLPSSIAGIQYHSNAFPIPSFRYRNTKGLELRQRSFSITASNSSD NSIKEENGSSKASSDAQGPPFLTILAGIFV
Subjt:  MASIFSAPPSRLNLTSRPSLIHGAVLPSSIAGIQYHSNAFPIPSFRYRNTKGLELRQRSFSITASNSSDGNSIKEENGSSKASSDAQGPPFLTILAGIFV

Query:  FSLLLWMLSSAATSLIGLVVKLISTK
        FSLLLWMLSSAATSLIGLVVKLISTK
Subjt:  FSLLLWMLSSAATSLIGLVVKLISTK

XP_022953425.1 uncharacterized protein LOC111455984 [Cucurbita moschata]1.4e-57100Show/hide
Query:  MASIFSAPPSRLNLTSRPSLIHGAVLPSSIAGIQYHSNAFPIPSFRYRNTKGLELRQRSFSITASNSSDGNSIKEENGSSKASSDAQGPPFLTILAGIFV
        MASIFSAPPSRLNLTSRPSLIHGAVLPSSIAGIQYHSNAFPIPSFRYRNTKGLELRQRSFSITASNSSDGNSIKEENGSSKASSDAQGPPFLTILAGIFV
Subjt:  MASIFSAPPSRLNLTSRPSLIHGAVLPSSIAGIQYHSNAFPIPSFRYRNTKGLELRQRSFSITASNSSDGNSIKEENGSSKASSDAQGPPFLTILAGIFV

Query:  FSLLLWMLSSAATSLIGLVVKLISTK
        FSLLLWMLSSAATSLIGLVVKLISTK
Subjt:  FSLLLWMLSSAATSLIGLVVKLISTK

XP_022991945.1 uncharacterized protein LOC111488436 [Cucurbita maxima]8.4e-5596.8Show/hide
Query:  MASIFSAPPSRLNLTSRPSLIHGAVLPSSIAGIQYHSNAFPIPSFRYRNTKGLELRQRSFSITASNSSDGNSIKEENGSSKASSDAQGPPFLTILAGIFV
        MASIF+APPSRLNLTSRPSLIHGAVLPSSIAGIQYHSNAFPIPSFRYRNTKGLEL  RSFSITASNSSDGNSI+EENGSSKASSDAQGPPFLTILAGIFV
Subjt:  MASIFSAPPSRLNLTSRPSLIHGAVLPSSIAGIQYHSNAFPIPSFRYRNTKGLELRQRSFSITASNSSDGNSIKEENGSSKASSDAQGPPFLTILAGIFV

Query:  FSLLLWMLSSAATSLIGLVVKLIST
        FSLLLWMLSSAATSLIGLVVKLIST
Subjt:  FSLLLWMLSSAATSLIGLVVKLIST

XP_023547947.1 uncharacterized protein LOC111806743 [Cucurbita pepo subsp. pepo]1.9e-5496.03Show/hide
Query:  MASIFSAPPSRLNLTSRPSLIHGAVLPSSIAGIQYHSNAFPIPSFRYRNTKGLELRQRSFSITASNSSDGNSIKEENGSSKASSDAQGPPFLTILAGIFV
        MASIF+APPSRLNLTSRPSLIHGAVLPSS AGIQYHSNAFPIPSF YRNTKGLELRQRSFSITASNSSD NSIKEENGSSKAS DAQGPPFLTILAGIFV
Subjt:  MASIFSAPPSRLNLTSRPSLIHGAVLPSSIAGIQYHSNAFPIPSFRYRNTKGLELRQRSFSITASNSSDGNSIKEENGSSKASSDAQGPPFLTILAGIFV

Query:  FSLLLWMLSSAATSLIGLVVKLISTK
        FSLLLWMLSSAATSLIGLVVKLISTK
Subjt:  FSLLLWMLSSAATSLIGLVVKLISTK

XP_038899532.1 uncharacterized protein LOC120086813 isoform X1 [Benincasa hispida]1.1e-4684.13Show/hide
Query:  MASIFSAPPSRLNLTSRPSLIHGAVLPSSIAGIQYHSNAFPIPSFRYRNTKGLELRQRSFSITASNSSDGNSIKEENGSSKASSDAQGPPFLTILAGIFV
        MASIF+AP  RLNLTSRPSLIH A LPSSI  IQ+HSNA P PSFRYRNT+GLELRQRSFSITASNSSDGNSIKEENGSSKAS+DAQGPPFLTILAGIFV
Subjt:  MASIFSAPPSRLNLTSRPSLIHGAVLPSSIAGIQYHSNAFPIPSFRYRNTKGLELRQRSFSITASNSSDGNSIKEENGSSKASSDAQGPPFLTILAGIFV

Query:  FSLLLWMLSSAATSLIGLVVKLISTK
        FSL+LW+ SS  TS + LVVKLISTK
Subjt:  FSLLLWMLSSAATSLIGLVVKLISTK

TrEMBL top hitse value%identityAlignment
A0A0A0K9W1 Uncharacterized protein1.7e-3776.56Show/hide
Query:  MASIFSAPPSRLNLTSRPSLIHGAVLPSSIAGIQYHSNAFPIPSFRYR-NTKGLELRQRSFSITASNSSDGNSIKEENGSSKASS-DAQGPPFLTILAGI
        MAS+F+APPS+LNLTSR S IH A LPS IA IQ+HSNA P PSFRYR N  GLELRQR  SI AS S+DGNSIKEEN SSKASS DAQGPPFLTILAG 
Subjt:  MASIFSAPPSRLNLTSRPSLIHGAVLPSSIAGIQYHSNAFPIPSFRYR-NTKGLELRQRSFSITASNSSDGNSIKEENGSSKASS-DAQGPPFLTILAGI

Query:  FVFSLLLWMLSSAATSLIGLVVKLISTK
        FV SL+LW+ SSA TSL+GLVVKLIS K
Subjt:  FVFSLLLWMLSSAATSLIGLVVKLISTK

A0A6J1GPL5 uncharacterized protein LOC1114559846.7e-58100Show/hide
Query:  MASIFSAPPSRLNLTSRPSLIHGAVLPSSIAGIQYHSNAFPIPSFRYRNTKGLELRQRSFSITASNSSDGNSIKEENGSSKASSDAQGPPFLTILAGIFV
        MASIFSAPPSRLNLTSRPSLIHGAVLPSSIAGIQYHSNAFPIPSFRYRNTKGLELRQRSFSITASNSSDGNSIKEENGSSKASSDAQGPPFLTILAGIFV
Subjt:  MASIFSAPPSRLNLTSRPSLIHGAVLPSSIAGIQYHSNAFPIPSFRYRNTKGLELRQRSFSITASNSSDGNSIKEENGSSKASSDAQGPPFLTILAGIFV

Query:  FSLLLWMLSSAATSLIGLVVKLISTK
        FSLLLWMLSSAATSLIGLVVKLISTK
Subjt:  FSLLLWMLSSAATSLIGLVVKLISTK

A0A6J1H506 uncharacterized protein LOC1114606325.4e-3973.23Show/hide
Query:  MASIFSAPPSRLNLTS-RPSLIHGAVLPSSIAGIQYHSNAFPIPSFRYRNTKGLELRQRSFSITASNSSDGNSIKEENGSSKASSDAQGPPFLTILAGIF
        MAS+F+APPS+L L+S RPSL H A LP SI G+++H N FPIPSFRY+NTKGL+LRQRSFSITASNSSDGNS KE+N  SK + DAQGPPFLTILAG F
Subjt:  MASIFSAPPSRLNLTS-RPSLIHGAVLPSSIAGIQYHSNAFPIPSFRYRNTKGLELRQRSFSITASNSSDGNSIKEENGSSKASSDAQGPPFLTILAGIF

Query:  VFSLLLWMLSSAATSLIGLVVKLISTK
        VFSL+LW++SS+ T+LI L VKLISTK
Subjt:  VFSLLLWMLSSAATSLIGLVVKLISTK

A0A6J1JUC2 uncharacterized protein LOC1114884364.1e-5596.8Show/hide
Query:  MASIFSAPPSRLNLTSRPSLIHGAVLPSSIAGIQYHSNAFPIPSFRYRNTKGLELRQRSFSITASNSSDGNSIKEENGSSKASSDAQGPPFLTILAGIFV
        MASIF+APPSRLNLTSRPSLIHGAVLPSSIAGIQYHSNAFPIPSFRYRNTKGLEL  RSFSITASNSSDGNSI+EENGSSKASSDAQGPPFLTILAGIFV
Subjt:  MASIFSAPPSRLNLTSRPSLIHGAVLPSSIAGIQYHSNAFPIPSFRYRNTKGLELRQRSFSITASNSSDGNSIKEENGSSKASSDAQGPPFLTILAGIFV

Query:  FSLLLWMLSSAATSLIGLVVKLIST
        FSLLLWMLSSAATSLIGLVVKLIST
Subjt:  FSLLLWMLSSAATSLIGLVVKLIST

A0A6J1KVQ7 uncharacterized protein LOC1114980256.3e-4074.8Show/hide
Query:  MASIFSAPPSRLNLTS-RPSLIHGAVLPSSIAGIQYHSNAFPIPSFRYRNTKGLELRQRSFSITASNSSDGNSIKEENGSSKASSDAQGPPFLTILAGIF
        MAS+F+APPS+L L+S RPSL H A LP SI G+++H N FPIPSFRY+NTKGL+LRQRSFSITASNSSDGNS KEEN  SK + DAQGPPFLTILAG F
Subjt:  MASIFSAPPSRLNLTS-RPSLIHGAVLPSSIAGIQYHSNAFPIPSFRYRNTKGLELRQRSFSITASNSSDGNSIKEENGSSKASSDAQGPPFLTILAGIF

Query:  VFSLLLWMLSSAATSLIGLVVKLISTK
        VFSL+LW++SS+ T+LI LVVKLISTK
Subjt:  VFSLLLWMLSSAATSLIGLVVKLISTK

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCTTCCATTTTCTCTGCGCCGCCGTCTCGACTGAATCTCACTTCTCGCCCAAGTTTGATTCACGGAGCTGTTCTTCCCTCCTCCATCGCCGGCATTCAATATCACTC
CAATGCCTTTCCAATTCCTTCTTTCAGGTACAGGAACACCAAAGGATTGGAATTGAGGCAAAGATCATTTTCTATAACAGCCTCAAATTCCTCAGATGGGAATTCCATCA
AGGAGGAAAATGGTTCGAGTAAAGCAAGTAGTGATGCCCAAGGTCCTCCATTTCTTACTATCTTGGCTGGAATTTTTGTCTTTTCCCTCCTACTCTGGATGCTCAGTTCT
GCTGCCACTTCACTTATAGGTCTAGTCGTCAAGCTGATCTCAACAAAGTAG
mRNA sequenceShow/hide mRNA sequence
CACCATCCATTCTCCGCCCACAGTTTCTTGTGAGCTCGCTTCTCTTCCGAAGTTCCGAAGTCTTTGTAATACGAGTGAAGGTGAATGGCTTCCATTTTCTCTGCGCCGCC
GTCTCGACTGAATCTCACTTCTCGCCCAAGTTTGATTCACGGAGCTGTTCTTCCCTCCTCCATCGCCGGCATTCAATATCACTCCAATGCCTTTCCAATTCCTTCTTTCA
GGTACAGGAACACCAAAGGATTGGAATTGAGGCAAAGATCATTTTCTATAACAGCCTCAAATTCCTCAGATGGGAATTCCATCAAGGAGGAAAATGGTTCGAGTAAAGCA
AGTAGTGATGCCCAAGGTCCTCCATTTCTTACTATCTTGGCTGGAATTTTTGTCTTTTCCCTCCTACTCTGGATGCTCAGTTCTGCTGCCACTTCACTTATAGGTCTAGT
CGTCAAGCTGATCTCAACAAAGTAGTATGCCATTATTGGCATAATTCATGTTGCCTTAGAAGCTTAAACCCGTGTGGTTATATTCCTATCACACAACTCACTTTTTGGCT
AGTTTTTTTTAGCTTACTTCTAGTGAATAGTTTTTATTTTCATCTCGTTTATGCCTTGCTTCAGCCTTCAACTATGTTTAATTGTGAGGAAGGAATTCTTCACAGGCAGG
AATTCTTCAACTATGTTTAATTAAATGGTCTTAACTTATTGTGTGGACTAACCCATCTATTAAAATGTCCAAGTCAAGCCTCCTTAGGTGACCCGTCTCGGGAATAGAAT
GTAC
Protein sequenceShow/hide protein sequence
MASIFSAPPSRLNLTSRPSLIHGAVLPSSIAGIQYHSNAFPIPSFRYRNTKGLELRQRSFSITASNSSDGNSIKEENGSSKASSDAQGPPFLTILAGIFVFSLLLWMLSS
AATSLIGLVVKLISTK