CuGenDBv2

Gene ID	CmoCh17G009240
Organism	Cucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
Description	thylakoid lumenal 19 kDa protein, chloroplastic-like
Genome location	Cmo_Chr17:8247222..8248790
RNA-Seq Expression	CmoCh17G009240
Synteny	CmoCh17G009240
Gene Ontology terms	GO:0015979 - photosynthesis (biological process) GO:0009507 - chloroplast (cellular component) GO:0009654 - photosystem II oxygen evolving complex (cellular component) GO:0019898 - extrinsic component of membrane (cellular component) GO:0005509 - calcium ion binding (molecular function)
InterPro domains	IPR002683 - PsbP, C-terminal IPR016123 - Mog1/PsbP, alpha/beta/alpha sandwich

Homology

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GenBank top hits

e value

%identity

Alignment

KAG6575683.1 Thylakoid lumenal 19 kDa protein, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia]

1.6e-103

85.9

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Query:  AANSAAAKAPNYPR-------------SSIQTLTLLIDRRGAIAIAAIVSTSPPSLADAGPAFNVYYGTAASAANYGGLGGNANKKDSAEYVYDVPDGWK
        AA S  A AP  P+              S  +L+ L     AIAIA IVSTSPPSLADAGPAFNVYYGTAASAANYGGLGGNANKKDSAEYVYDVPDGWK
Subjt:  AANSAAAKAPNYPR-------------SSIQTLTLLIDRRGAIAIAAIVSTSPPSLADAGPAFNVYYGTAASAANYGGLGGNANKKDSAEYVYDVPDGWK

Query:  ERLVSKVEKGTNGTDSEFYNPKKRSEKEYLTFLAGIRQLGPKDVILNNLALSDVNLQDQIASAESFSAEEKKDENGQIYYEYEIDGAGTHSLISVTCAKN
        ERLVSKVEKGTNGTDSEFYNPKKRSEKEYLTFLAGIRQLGPKDVILNNLALSDVNLQDQIASAESFSAEEKKDENGQIYYEYEIDGAGTHSLISVTCAKN
Subjt:  ERLVSKVEKGTNGTDSEFYNPKKRSEKEYLTFLAGIRQLGPKDVILNNLALSDVNLQDQIASAESFSAEEKKDENGQIYYEYEIDGAGTHSLISVTCAKN

Query:  KLYAHFVNAPTPEWNRDQDMLRHVHESFKTIGSY
        KLYAHFVNAPTPEW+RDQDMLRHVHESFKTIGSY
Subjt:  KLYAHFVNAPTPEWNRDQDMLRHVHESFKTIGSY

XP_008461279.1 PREDICTED: thylakoid lumenal 19 kDa protein, chloroplastic [Cucumis melo]

3.5e-98

93.26

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Query:  AIAIAAIVSTSPPSLADAGPAFNVYYGTAASAANYGGLGGNANKKDSAEYVYDVPDGWKERLVSKVEKGTNGTDSEFYNPKKRSEKEYLTFLAGIRQLGP
        AIA+AAI++T+PPSLAD G AFNVYYGTAASAANYGGLGGNANKKD+AEYVYDVP+GWKERLVSKVEKGTNGTDSEFYNPKKRSEKEYLTFLAGIRQLGP
Subjt:  AIAIAAIVSTSPPSLADAGPAFNVYYGTAASAANYGGLGGNANKKDSAEYVYDVPDGWKERLVSKVEKGTNGTDSEFYNPKKRSEKEYLTFLAGIRQLGP

Query:  KDVILNNLALSDVNLQDQIASAESFSAEEKKDENGQIYYEYEIDGAGTHSLISVTCAKNKLYAHFVNAPTPEWNRDQDMLRHVHESFKTIGSY
        KDVILNNLALSDVNLQDQIASAESF A+EKKDENGQ+YY YEIDGAGTHSLISVTCAKNKLYAHFVNAPTPEWNRDQDMLRHVHESFKT+GSY
Subjt:  KDVILNNLALSDVNLQDQIASAESFSAEEKKDENGQIYYEYEIDGAGTHSLISVTCAKNKLYAHFVNAPTPEWNRDQDMLRHVHESFKTIGSY

XP_022991922.1 thylakoid lumenal 19 kDa protein, chloroplastic-like [Cucurbita maxima]

2.8e-103

87.34

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Query:  AANSAAAKAPNYPR--------SSIQTLTLLIDRRGAIAIAAIVSTSPPSLADAGPAFNVYYGTAASAANYGGLGGNANKKDSAEYVYDVPDGWKERLVS
        AA S    AP  P+         S  +L+ L     AIAIAAIVSTSPPSLADAGPAFNVYYGTAASAANYGGLGGNA+KKDSAEYVYDVPDGWKERLVS
Subjt:  AANSAAAKAPNYPR--------SSIQTLTLLIDRRGAIAIAAIVSTSPPSLADAGPAFNVYYGTAASAANYGGLGGNANKKDSAEYVYDVPDGWKERLVS

Query:  KVEKGTNGTDSEFYNPKKRSEKEYLTFLAGIRQLGPKDVILNNLALSDVNLQDQIASAESFSAEEKKDENGQIYYEYEIDGAGTHSLISVTCAKNKLYAH
        KVEKGTNGTDSEFYNPKKRSEKEYLTFLAGIRQLGPKDVILNNLALSDVNLQDQIASAESFSAEEKKDENGQIYYEYEID AGTHSLISVTCAKNKLYAH
Subjt:  KVEKGTNGTDSEFYNPKKRSEKEYLTFLAGIRQLGPKDVILNNLALSDVNLQDQIASAESFSAEEKKDENGQIYYEYEIDGAGTHSLISVTCAKNKLYAH

Query:  FVNAPTPEWNRDQDMLRHVHESFKTIGSY
        FVNAPTPEWNRDQDMLRHVHESFKTIGSY
Subjt:  FVNAPTPEWNRDQDMLRHVHESFKTIGSY

XP_023547955.1 thylakoid lumenal 19 kDa protein, chloroplastic-like [Cucurbita pepo subsp. pepo]

4.3e-104

86.32

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Query:  AANSAAAKAPNYPR-------------SSIQTLTLLIDRRGAIAIAAIVSTSPPSLADAGPAFNVYYGTAASAANYGGLGGNANKKDSAEYVYDVPDGWK
        AA S    AP  P+              S  +L+ L     AIAIAAIVSTSPPSLADAGPAFNVYYGTAASAANYGGLGGNANKKDSAEYVYDVPDGWK
Subjt:  AANSAAAKAPNYPR-------------SSIQTLTLLIDRRGAIAIAAIVSTSPPSLADAGPAFNVYYGTAASAANYGGLGGNANKKDSAEYVYDVPDGWK

Query:  ERLVSKVEKGTNGTDSEFYNPKKRSEKEYLTFLAGIRQLGPKDVILNNLALSDVNLQDQIASAESFSAEEKKDENGQIYYEYEIDGAGTHSLISVTCAKN
        ERLVSKVEKGTNGTDSEFYNPKKRSEKEYLTFLAGIRQLGPKDVILNNLALSDVNLQDQIASAESFSAEEKKDENGQIYYEYEIDGAGTHSLISVTCAKN
Subjt:  ERLVSKVEKGTNGTDSEFYNPKKRSEKEYLTFLAGIRQLGPKDVILNNLALSDVNLQDQIASAESFSAEEKKDENGQIYYEYEIDGAGTHSLISVTCAKN

Query:  KLYAHFVNAPTPEWNRDQDMLRHVHESFKTIGSY
        KLYAHFVNAPTPEWNRDQDMLRHVHESFKTIGSY
Subjt:  KLYAHFVNAPTPEWNRDQDMLRHVHESFKTIGSY

XP_038896859.1 thylakoid lumenal 19 kDa protein, chloroplastic [Benincasa hispida]

1.0e-97

93.75

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Query:  IAIAAIVSTSPPSLADAGPAFNVYYGTAASAANYGGLGGNANKKDSAEYVYDVPDGWKERLVSKVEKGTNGTDSEFYNPKKRSEKEYLTFLAGIRQLGPK
        IA+AAI+ST+PPSLAD G AFNVYYGTAASAANYGGLGGNA+KKD+AEY+YDVP+GWKERLVSKVEKGTNGTDSEFYNPKKR+EKEYLTFLAGIRQLGPK
Subjt:  IAIAAIVSTSPPSLADAGPAFNVYYGTAASAANYGGLGGNANKKDSAEYVYDVPDGWKERLVSKVEKGTNGTDSEFYNPKKRSEKEYLTFLAGIRQLGPK

Query:  DVILNNLALSDVNLQDQIASAESFSAEEKKDENGQIYYEYEIDGAGTHSLISVTCAKNKLYAHFVNAPTPEWNRDQDMLRHVHESFKTIGSY
        DVILNNLALSDVNLQDQIASAESF AEEKKDENGQIYY YEIDGAGTHSLISVTCAKNKLYAHFVNAPTPEWNRDQDMLRHVHESFKTIGSY
Subjt:  DVILNNLALSDVNLQDQIASAESFSAEEKKDENGQIYYEYEIDGAGTHSLISVTCAKNKLYAHFVNAPTPEWNRDQDMLRHVHESFKTIGSY

TrEMBL top hits

e value

%identity

Alignment

A0A0A0K624 PsbP domain-containing protein

8.4e-98

92.75

Show/hide

Query:  AIAIAAIVSTSPPSLADAGPAFNVYYGTAASAANYGGLGGNANKKDSAEYVYDVPDGWKERLVSKVEKGTNGTDSEFYNPKKRSEKEYLTFLAGIRQLGP
        AIA+AAI+ST+ PSLAD G AFNVYYGTAASAANYGGLGGNANKKD+AEY+YDVP+GWKERLVSKVEKGTNGTDSEFYNPKKRSEKEYLTFLAGIRQLGP
Subjt:  AIAIAAIVSTSPPSLADAGPAFNVYYGTAASAANYGGLGGNANKKDSAEYVYDVPDGWKERLVSKVEKGTNGTDSEFYNPKKRSEKEYLTFLAGIRQLGP

Query:  KDVILNNLALSDVNLQDQIASAESFSAEEKKDENGQIYYEYEIDGAGTHSLISVTCAKNKLYAHFVNAPTPEWNRDQDMLRHVHESFKTIGSY
        KDVILNNLALSDVNLQDQIASAESF AEEKKDENGQ+YY YEIDGAGTHSLISVTCAKNKLYAHFVNAPTPEWNRDQDMLRHVH+SFKT+GSY
Subjt:  KDVILNNLALSDVNLQDQIASAESFSAEEKKDENGQIYYEYEIDGAGTHSLISVTCAKNKLYAHFVNAPTPEWNRDQDMLRHVHESFKTIGSY

A0A1S3CES2 thylakoid lumenal 19 kDa protein, chloroplastic

1.7e-98

93.26

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Query:  AIAIAAIVSTSPPSLADAGPAFNVYYGTAASAANYGGLGGNANKKDSAEYVYDVPDGWKERLVSKVEKGTNGTDSEFYNPKKRSEKEYLTFLAGIRQLGP
        AIA+AAI++T+PPSLAD G AFNVYYGTAASAANYGGLGGNANKKD+AEYVYDVP+GWKERLVSKVEKGTNGTDSEFYNPKKRSEKEYLTFLAGIRQLGP
Subjt:  AIAIAAIVSTSPPSLADAGPAFNVYYGTAASAANYGGLGGNANKKDSAEYVYDVPDGWKERLVSKVEKGTNGTDSEFYNPKKRSEKEYLTFLAGIRQLGP

Query:  KDVILNNLALSDVNLQDQIASAESFSAEEKKDENGQIYYEYEIDGAGTHSLISVTCAKNKLYAHFVNAPTPEWNRDQDMLRHVHESFKTIGSY
        KDVILNNLALSDVNLQDQIASAESF A+EKKDENGQ+YY YEIDGAGTHSLISVTCAKNKLYAHFVNAPTPEWNRDQDMLRHVHESFKT+GSY
Subjt:  KDVILNNLALSDVNLQDQIASAESFSAEEKKDENGQIYYEYEIDGAGTHSLISVTCAKNKLYAHFVNAPTPEWNRDQDMLRHVHESFKTIGSY

A0A5D3CG07 Thylakoid lumenal 19 kDa protein

1.7e-98

93.26

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Query:  AIAIAAIVSTSPPSLADAGPAFNVYYGTAASAANYGGLGGNANKKDSAEYVYDVPDGWKERLVSKVEKGTNGTDSEFYNPKKRSEKEYLTFLAGIRQLGP
        AIA+AAI++T+PPSLAD G AFNVYYGTAASAANYGGLGGNANKKD+AEYVYDVP+GWKERLVSKVEKGTNGTDSEFYNPKKRSEKEYLTFLAGIRQLGP
Subjt:  AIAIAAIVSTSPPSLADAGPAFNVYYGTAASAANYGGLGGNANKKDSAEYVYDVPDGWKERLVSKVEKGTNGTDSEFYNPKKRSEKEYLTFLAGIRQLGP

Query:  KDVILNNLALSDVNLQDQIASAESFSAEEKKDENGQIYYEYEIDGAGTHSLISVTCAKNKLYAHFVNAPTPEWNRDQDMLRHVHESFKTIGSY
        KDVILNNLALSDVNLQDQIASAESF A+EKKDENGQ+YY YEIDGAGTHSLISVTCAKNKLYAHFVNAPTPEWNRDQDMLRHVHESFKT+GSY
Subjt:  KDVILNNLALSDVNLQDQIASAESFSAEEKKDENGQIYYEYEIDGAGTHSLISVTCAKNKLYAHFVNAPTPEWNRDQDMLRHVHESFKTIGSY

A0A6J1H7M1 thylakoid lumenal 19 kDa protein, chloroplastic-like

1.2e-96

92.23

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Query:  AIAIAAIVSTSPPSLADAGPAFNVYYGTAASAANYGGLGGNANKKDSAEYVYDVPDGWKERLVSKVEKGTNGTDSEFYNPKKRSEKEYLTFLAGIRQLGP
        AIA+AAI+ST+PPSLADAG AFNVYYGTAASAANYGG GGNA+KKDSAEY+YDVP+GWKERLVSKVEKGTNGTDSEFYNPKKR EKEYLTFLAGIRQL P
Subjt:  AIAIAAIVSTSPPSLADAGPAFNVYYGTAASAANYGGLGGNANKKDSAEYVYDVPDGWKERLVSKVEKGTNGTDSEFYNPKKRSEKEYLTFLAGIRQLGP

Query:  KDVILNNLALSDVNLQDQIASAESFSAEEKKDENGQIYYEYEIDGAGTHSLISVTCAKNKLYAHFVNAPTPEWNRDQDMLRHVHESFKTIGSY
        KDVILNNLALSDVNLQDQIASAE  SAEEKKDENGQIYY YEIDGAGTHSLISVTCAKNKLYAHFVNAPTPEW+RDQDMLRHVHESFKT+GSY
Subjt:  KDVILNNLALSDVNLQDQIASAESFSAEEKKDENGQIYYEYEIDGAGTHSLISVTCAKNKLYAHFVNAPTPEWNRDQDMLRHVHESFKTIGSY

A0A6J1JN94 thylakoid lumenal 19 kDa protein, chloroplastic-like

1.3e-103

87.34

Show/hide

Query:  AANSAAAKAPNYPR--------SSIQTLTLLIDRRGAIAIAAIVSTSPPSLADAGPAFNVYYGTAASAANYGGLGGNANKKDSAEYVYDVPDGWKERLVS
        AA S    AP  P+         S  +L+ L     AIAIAAIVSTSPPSLADAGPAFNVYYGTAASAANYGGLGGNA+KKDSAEYVYDVPDGWKERLVS
Subjt:  AANSAAAKAPNYPR--------SSIQTLTLLIDRRGAIAIAAIVSTSPPSLADAGPAFNVYYGTAASAANYGGLGGNANKKDSAEYVYDVPDGWKERLVS

Query:  KVEKGTNGTDSEFYNPKKRSEKEYLTFLAGIRQLGPKDVILNNLALSDVNLQDQIASAESFSAEEKKDENGQIYYEYEIDGAGTHSLISVTCAKNKLYAH
        KVEKGTNGTDSEFYNPKKRSEKEYLTFLAGIRQLGPKDVILNNLALSDVNLQDQIASAESFSAEEKKDENGQIYYEYEID AGTHSLISVTCAKNKLYAH
Subjt:  KVEKGTNGTDSEFYNPKKRSEKEYLTFLAGIRQLGPKDVILNNLALSDVNLQDQIASAESFSAEEKKDENGQIYYEYEIDGAGTHSLISVTCAKNKLYAH

Query:  FVNAPTPEWNRDQDMLRHVHESFKTIGSY
        FVNAPTPEWNRDQDMLRHVHESFKTIGSY
Subjt:  FVNAPTPEWNRDQDMLRHVHESFKTIGSY

SwissProt top hits

e value

%identity

Alignment

P82658 Thylakoid lumenal 19 kDa protein, chloroplastic

8.7e-76

63.76

Show/hide

Query:  AAAKAPNYPRSSIQTLTLLIDRRGAIAIAAIVSTSP--PSLADAGPAFNVYYGTAASAANYGGLGGNANKKDSAEYVYDVPDGWKERLVSKVEKGTNGTD
        +A + P  P++    L   +    A+A  ++++  P  P+  +    + +YYGTAASAANYGG GGN+++K SAEYVYDVP+GWKERLVSKVEKGTNGTD
Subjt:  AAAKAPNYPRSSIQTLTLLIDRRGAIAIAAIVSTSP--PSLADAGPAFNVYYGTAASAANYGGLGGNANKKDSAEYVYDVPDGWKERLVSKVEKGTNGTD

Query:  SEFYNPKKRSEKEYLTFLAGIRQLGPKDVILNNLALSDVNLQDQIASAESFSAEEKKDENGQIYYEYEIDGAGTHSLISVTCAKNKLYAHFVNAPTPEWN
        SEFYNPKK++EKEYLTFLAG RQL P+DVILNNLALSDV LQD IA A+   +EE+KDE GQ+YY YEIDG G HSLI+VTC+KN+LYAHFVNAP PEWN
Subjt:  SEFYNPKKRSEKEYLTFLAGIRQLGPKDVILNNLALSDVNLQDQIASAESFSAEEKKDENGQIYYEYEIDGAGTHSLISVTCAKNKLYAHFVNAPTPEWN

Query:  RDQDMLRHVHESFKTIGS
        RD D L H+ +SFKT+ S
Subjt:  RDQDMLRHVHESFKTIGS

Arabidopsis top hits

e value

%identity

Alignment

AT3G63540.1 Mog1/PsbP/DUF1795-like photosystem II reaction center PsbP family protein

2.4e-60

76.43

Show/hide

Query:  DVPDGWKERLVSKVEKGTNGTDSEFYNPKKRSEKEYLTFLAGIRQLGPKDVILNNLALSDVNLQDQIASAESFSAEEKKDENGQIYYEYEIDGAGTHSLI
        +V +GWKERLVSKVEKGTNGTDSEFYNPKK++EKEYLTFLAG RQL P+DVILNNLALSDV LQD IA A+   +EE+KDE GQ+YY YEIDG G HSLI
Subjt:  DVPDGWKERLVSKVEKGTNGTDSEFYNPKKRSEKEYLTFLAGIRQLGPKDVILNNLALSDVNLQDQIASAESFSAEEKKDENGQIYYEYEIDGAGTHSLI

Query:  SVTCAKNKLYAHFVNAPTPEWNRDQDMLRHVHESFKTIGS
        +VTC+KNKLYAHFVNAP PEWNRD D L H+ +SFKT+ S
Subjt:  SVTCAKNKLYAHFVNAPTPEWNRDQDMLRHVHESFKTIGS

Sequences

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CDS sequence

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mRNA sequence

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ATGCCCCTGCACGGAAATGGGATATCGCTTGTGAAAATCGGGGCATTGTTAAATCCAAAATCCACGAAAATCGCTCACTATGGCCGCAGCAATCTCGCCATTGGCGTTCT
TCTCCGCCGCCGCTGCATCCACCGGAACAACCGCCCCATAATTGCCGCAAATTCCGCCGCCGCAAAAGCCCCAAATTATCCCCGTTCTTCAATCCAAACCCTCACTCTCC
TCATTGACCGCCGCGGCGCCATCGCCATAGCCGCGATTGTGAGCACTAGTCCACCGTCACTGGCCGACGCCGGCCCCGCATTCAACGTCTACTACGGTACCGCTGCCAGC
GCCGCCAACTACGGCGGCCTTGGCGGCAACGCCAACAAGAAAGACTCTGCGGAATACGTCTACGACGTGCCGGACGGCTGGAAGGAGCGATTAGTATCAAAAGTCGAAAA
AGGTACGAACGGAACCGATAGCGAATTTTACAATCCGAAGAAACGATCGGAGAAAGAATACCTAACTTTCCTGGCCGGAATCCGGCAATTAGGGCCAAAAGATGTGATTC
TAAATAACCTAGCGCTATCGGACGTGAATTTGCAGGATCAGATCGCGAGCGCGGAGAGCTTCTCGGCGGAGGAGAAGAAGGATGAGAATGGACAGATTTATTACGAGTAT
GAGATCGATGGCGCCGGAACTCACAGTTTGATATCGGTGACCTGTGCGAAGAACAAGCTGTATGCGCATTTTGTTAATGCACCGACGCCGGAGTGGAATCGAGATCAGGA
TATGCTTCGGCATGTTCATGAATCCTTCAAGACGATCGGATCGTATTGAGCTTTGGTCGCGTCGTCGGAGATTTGGTCGGAGGGAGGTTTGCGTTGTCGCTGTGTACGAA
TTGGTTGTTACATGCTTATTCTTGAATGACGGAAATCTGTAGCTGTGTACGAATTAGCCCGATCATTTAAGTTCATGGTTGTATAAGTAATGAACATGGTCTCTGTTACG
ACAAATCATTTTGAAAAAATAAAAAATAAAGTCCTGAAAGATTAAATTCAAACTAAACAGTATCATTACGAGCTATAAGGATGAACATGTTTATCATACAGCTCCACCGA
TCACGCTCGATCATCACTCAACTCGTCGTCGACCCCCTAGTGCATCAGCGATAGTAAAAACAGCTCTCTGTCCCG

Protein sequence

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MPLHGNGISLVKIGALLNPKSTKIAHYGRSNLAIGVLLRRRCIHRNNRPIIAANSAAAKAPNYPRSSIQTLTLLIDRRGAIAIAAIVSTSPPSLADAGPAFNVYYGTAAS
AANYGGLGGNANKKDSAEYVYDVPDGWKERLVSKVEKGTNGTDSEFYNPKKRSEKEYLTFLAGIRQLGPKDVILNNLALSDVNLQDQIASAESFSAEEKKDENGQIYYEY
EIDGAGTHSLISVTCAKNKLYAHFVNAPTPEWNRDQDMLRHVHESFKTIGSY

CmoCh17G009240 (gene) of Cucurbita moschata (Rifu) v1 genome