CuGenDBv2

Gene ID	CmoCh17G009300
Organism	Cucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
Description	protein FRA10AC1
Genome location	Cmo_Chr17:8283783..8287715
RNA-Seq Expression	CmoCh17G009300
Synteny	CmoCh17G009300
Gene Ontology terms	NA
InterPro domains	NA

Homology

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GenBank top hits

e value

%identity

Alignment

XP_022953254.1 uncharacterized protein LOC111455861 isoform X1 [Cucurbita moschata]

2.2e-28

100

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Query:  MASFGSLKNAIFEREERKQQYQAHVRGLNAHDRRKKFMHAQRSFITRERKKMRNSEGWSKKCPKGRG
        MASFGSLKNAIFEREERKQQYQAHVRGLNAHDRRKKFMHAQRSFITRERKKMRNSEGWSKKCPKGRG
Subjt:  MASFGSLKNAIFEREERKQQYQAHVRGLNAHDRRKKFMHAQRSFITRERKKMRNSEGWSKKCPKGRG

XP_022953255.1 uncharacterized protein LOC111455861 isoform X2 [Cucurbita moschata]

2.5e-32

100

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Query:  MASFGSLKNAIFEREERKQQYQAHVRGLNAHDRRKKFMHAQRSFITRERKKMRNSEGWSKKCPKGRGTTPNFK
        MASFGSLKNAIFEREERKQQYQAHVRGLNAHDRRKKFMHAQRSFITRERKKMRNSEGWSKKCPKGRGTTPNFK
Subjt:  MASFGSLKNAIFEREERKQQYQAHVRGLNAHDRRKKFMHAQRSFITRERKKMRNSEGWSKKCPKGRGTTPNFK

XP_022953256.1 uncharacterized protein LOC111455861 isoform X3 [Cucurbita moschata]

7.7e-26

94.29

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Query:  MASFGSLKNAIFEREERKQQYQAHVRGLNAHDRRKKFMH---AQRSFITRERKKMRNSEGWSKKCPKGRG
        MASFGSLKNAIFEREERKQQYQAHVRGLNAHDRRKKFM    AQRSFITRERKKMRNSEGWSKKCPKGRG
Subjt:  MASFGSLKNAIFEREERKQQYQAHVRGLNAHDRRKKFMH---AQRSFITRERKKMRNSEGWSKKCPKGRG

XP_022953257.1 uncharacterized protein LOC111455861 isoform X4 [Cucurbita moschata]

2.2e-41

95.74

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Query:  MASFGSLKNAIFEREERKQQYQAHVRGLNAHDRRKKFMH---AQRSFITRERKKMRNSEGWSKKCPKGRGTTPNFKTLLPFLCRKEGFNIIRGS
        MASFGSLKNAIFEREERKQQYQAHVRGLNAHDRRKKFM    AQRSFITRERKKMRNSEGWSKKCPKGRGTTPNFKTLLPFLCRKEGFNIIRGS
Subjt:  MASFGSLKNAIFEREERKQQYQAHVRGLNAHDRRKKFMH---AQRSFITRERKKMRNSEGWSKKCPKGRGTTPNFKTLLPFLCRKEGFNIIRGS

XP_031745033.1 protein FRA10AC1 isoform X1 [Cucumis sativus]

2.7e-10

94.87

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Query:  MASFGSLKNAIFEREERKQQYQAHVRGLNAHDRRKKFMH
        MASFGSLKNAIFEREERKQQYQAHVRGLNA+DR KKFMH
Subjt:  MASFGSLKNAIFEREERKQQYQAHVRGLNAHDRRKKFMH

TrEMBL top hits

e value

%identity

Alignment

A0A6J1GMH1 uncharacterized protein LOC111455861 isoform X3

3.8e-26

94.29

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Query:  MASFGSLKNAIFEREERKQQYQAHVRGLNAHDRRKKFMH---AQRSFITRERKKMRNSEGWSKKCPKGRG
        MASFGSLKNAIFEREERKQQYQAHVRGLNAHDRRKKFM    AQRSFITRERKKMRNSEGWSKKCPKGRG
Subjt:  MASFGSLKNAIFEREERKQQYQAHVRGLNAHDRRKKFMH---AQRSFITRERKKMRNSEGWSKKCPKGRG

A0A6J1GMR5 uncharacterized protein LOC111455861 isoform X4

1.1e-41

95.74

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Query:  MASFGSLKNAIFEREERKQQYQAHVRGLNAHDRRKKFMH---AQRSFITRERKKMRNSEGWSKKCPKGRGTTPNFKTLLPFLCRKEGFNIIRGS
        MASFGSLKNAIFEREERKQQYQAHVRGLNAHDRRKKFM    AQRSFITRERKKMRNSEGWSKKCPKGRGTTPNFKTLLPFLCRKEGFNIIRGS
Subjt:  MASFGSLKNAIFEREERKQQYQAHVRGLNAHDRRKKFMH---AQRSFITRERKKMRNSEGWSKKCPKGRGTTPNFKTLLPFLCRKEGFNIIRGS

A0A6J1GP43 uncharacterized protein LOC111455861 isoform X1

1.1e-28

100

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Query:  MASFGSLKNAIFEREERKQQYQAHVRGLNAHDRRKKFMHAQRSFITRERKKMRNSEGWSKKCPKGRG
        MASFGSLKNAIFEREERKQQYQAHVRGLNAHDRRKKFMHAQRSFITRERKKMRNSEGWSKKCPKGRG
Subjt:  MASFGSLKNAIFEREERKQQYQAHVRGLNAHDRRKKFMHAQRSFITRERKKMRNSEGWSKKCPKGRG

A0A6J1GP49 uncharacterized protein LOC111455861 isoform X2

1.2e-32

100

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Query:  MASFGSLKNAIFEREERKQQYQAHVRGLNAHDRRKKFMHAQRSFITRERKKMRNSEGWSKKCPKGRGTTPNFK
        MASFGSLKNAIFEREERKQQYQAHVRGLNAHDRRKKFMHAQRSFITRERKKMRNSEGWSKKCPKGRGTTPNFK
Subjt:  MASFGSLKNAIFEREERKQQYQAHVRGLNAHDRRKKFMHAQRSFITRERKKMRNSEGWSKKCPKGRGTTPNFK

A0A6J1L051 protein FRA10AC1 isoform X1

1.3e-10

72.22

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Query:  MASFGSLKNAIFEREERKQQYQAHVRGLNAHDRRKKFMHAQRSFITRERKKMRN
        MASFGSLKNAIFEREERKQQYQAHVRGLNA+DR KKFMH    F  + + +  N
Subjt:  MASFGSLKNAIFEREERKQQYQAHVRGLNAHDRRKKFMHAQRSFITRERKKMRN

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT4G15030.1 CONTAINS InterPro DOMAIN/s: Folate-sensitive fragile site protein Fra10Ac1 (InterPro:IPR019129); Has 8455 Blast hits to 5700 proteins in 376 species: Archae - 6; Bacteria - 264; Metazoa - 3820; Fungi - 744; Plants - 645; Viruses - 76; Other Eukaryotes - 2900 (source: NCBI BLink).

2.3e-07

48.98

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Query:  MASFGSLKNAIFEREERKQQYQAHVRGLNAHDRRKKFMHAQRSFITRER
        M S  ++++ I++REERKQQYQAH+RGLNA++R KKF+     F  +++
Subjt:  MASFGSLKNAIFEREERKQQYQAHVRGLNAHDRRKKFMHAQRSFITRER

AT4G15030.2 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Folate-sensitive fragile site protein Fra10Ac1 (InterPro:IPR019129); Has 8498 Blast hits to 5699 proteins in 376 species: Archae - 6; Bacteria - 264; Metazoa - 3838; Fungi - 743; Plants - 650; Viruses - 76; Other Eukaryotes - 2921 (source: NCBI BLink).

3.6e-05

43.4

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Query:  MASFGSLKNAIFEREERK----QQYQAHVRGLNAHDRRKKFMHAQRSFITRER
        M S  ++++ I++REERK    +QYQAH+RGLNA++R KKF+     F  +++
Subjt:  MASFGSLKNAIFEREERK----QQYQAHVRGLNAHDRRKKFMHAQRSFITRER

Sequences

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CDS sequence

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mRNA sequence

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ATGGCGTCGTTTGGCTCTCTGAAGAATGCCATCTTCGAAAGAGAAGAGAGAAAACAGCAGTATCAGGCGCATGTGCGAGGGCTCAATGCTCACGATCGCCGCAAGAAGTT
TATGCATGCTCAAAGAAGCTTCATTACAAGAGAAAGAAAGAAAATGAGAAACAGTGAAGGATGGAGCAAGAAATGTCCAAAAGGAAGAGGTACCACTCCAAACTTTAAGA
CTCTTTTGCCGTTTCTTTGCAGGAAAGAAGGCTTCAACATCATCAGGGGATCATAAAGCTGATGACAAAAACGACTTTGATGAATATGGGCCTCAAGGCTACACTTCCGG
CCTCCACAGGCAGTATTTTCAGATATGAGAAATGGGTATGAGGCCTTCCGAAGAAACTAAACTCCATCATGGGTTTATAACCAAGGAATGCATCTTCATGGATGAGAAAT
GGGTATGAGGCCTTATGAAGAAACTAAAAGCAAAGTCAGAAGAGTTTATACTAAAAGTGGACAATATCATACAATTGTAGAGTGCTGTGATTCTTAATAAGGTTGTGGGT
TGGTGGACGTGGACAATGGGATAATTTCTCTCCGTCCTCTAGTTATATGAATACACGTAGAATAACAAAATTTTATTAATAAAGTCG

Protein sequence

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MASFGSLKNAIFEREERKQQYQAHVRGLNAHDRRKKFMHAQRSFITRERKKMRNSEGWSKKCPKGRGTTPNFKTLLPFLCRKEGFNIIRGS

CmoCh17G009300 (gene) of Cucurbita moschata (Rifu) v1 genome