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CmoCh17G009900 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh17G009900
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
DescriptionPhotosystem II CP47 reaction center protein
Genome locationCmo_Chr17:8558654..8559290
RNA-Seq ExpressionCmoCh17G009900
SyntenyCmoCh17G009900
Gene Ontology termsGO:0009767 - photosynthetic electron transport chain (biological process)
GO:0009507 - chloroplast (cellular component)
GO:0009521 - photosystem (cellular component)
GO:0042651 - thylakoid membrane (cellular component)
GO:0016168 - chlorophyll binding (molecular function)
InterPro domainsIPR000932 - Photosystem antenna protein-like
IPR036001 - Photosystem antenna protein-like superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAF8657253.1 hypothetical protein HU200_060268 [Digitaria exilis]9.6e-5473.79Show/hide
Query:  MGLPWYRVHTVVLNDPGRLLSVHIMHTALVFVWADSMVLYELAIFYPSIPVLDPMWRQGDI-------SNVETRRQGMFVISCSYVFSGLCFLAAIWHWV
        MGLPWYRVHTVVLNDPGRLLSVHIMHTALV  WA SM LYELA+F PS PVLDPMWRQG           +     G  V     VFSGLCFLAAIWHWV
Subjt:  MGLPWYRVHTVVLNDPGRLLSVHIMHTALVFVWADSMVLYELAIFYPSIPVLDPMWRQGDI-------SNVETRRQGMFVISCSYVFSGLCFLAAIWHWV

Query:  YWDLEIFCDERTGKPSLDLPKIFGIHLFLSGLDYFGFGSFHDKGL
        YWDLEIFCDERTGKPSLDLPKIFGIHLFL+G+  FGFG+FH  GL
Subjt:  YWDLEIFCDERTGKPSLDLPKIFGIHLFLSGLDYFGFGSFHDKGL

KAG6736872.1 hypothetical protein POTOM_060213 [Populus tomentosa]9.6e-5476.81Show/hide
Query:  MGLPWYRVHTVVLNDPGRLLSVHIMHTALVFVWADSMVLYELAIFYPSIPVLDPMWRQGDISNVETRRQGMFVISCSYVFSGLCFLAAIWHWVYWDLEIF
        MGLPWYRVHTVVLNDPGRLL+VHIMHTALV  WA SM LYELA+F PS PVLDPMWRQG             V     VFSGLCFLAAIWHWVYWDLEIF
Subjt:  MGLPWYRVHTVVLNDPGRLLSVHIMHTALVFVWADSMVLYELAIFYPSIPVLDPMWRQGDISNVETRRQGMFVISCSYVFSGLCFLAAIWHWVYWDLEIF

Query:  CDERTGKPSLDLPKIFGIHLFLSGLDYFGFGSFHDKGL
        CDERTGKPSLDLPKIFGIHLFLSG+  FGFG+FH  GL
Subjt:  CDERTGKPSLDLPKIFGIHLFLSGLDYFGFGSFHDKGL

RCU61571.1 hypothetical protein SETIT_J014000v2 [Setaria italica]9.6e-5473.79Show/hide
Query:  MGLPWYRVHTVVLNDPGRLLSVHIMHTALVFVWADSMVLYELAIFYPSIPVLDPMWRQGDI-------SNVETRRQGMFVISCSYVFSGLCFLAAIWHWV
        MGLPWYRVHTVVLNDPGRLLSVHIMHTALV  WA SM LYELA+F PS PVLDPMWRQG           +     G  V     VFSGLCFLAAIWHWV
Subjt:  MGLPWYRVHTVVLNDPGRLLSVHIMHTALVFVWADSMVLYELAIFYPSIPVLDPMWRQGDI-------SNVETRRQGMFVISCSYVFSGLCFLAAIWHWV

Query:  YWDLEIFCDERTGKPSLDLPKIFGIHLFLSGLDYFGFGSFHDKGL
        YWDLEIFCDERTGKPSLDLPKIFGIHLFL+G+  FGFG+FH  GL
Subjt:  YWDLEIFCDERTGKPSLDLPKIFGIHLFLSGLDYFGFGSFHDKGL

TKY68608.1 Photosystem II CP47 reaction center protein [Spatholobus suberectus]9.6e-5476.81Show/hide
Query:  MGLPWYRVHTVVLNDPGRLLSVHIMHTALVFVWADSMVLYELAIFYPSIPVLDPMWRQGDISNVETRRQGMFVISCSYVFSGLCFLAAIWHWVYWDLEIF
        MGLPWYRVHTVVLNDPGRLLSVHIMHTALV  WA SM LYELA+F PS PVLDPMWRQG             V     VFSGLCFLAAIWHWVYWDLEIF
Subjt:  MGLPWYRVHTVVLNDPGRLLSVHIMHTALVFVWADSMVLYELAIFYPSIPVLDPMWRQGDISNVETRRQGMFVISCSYVFSGLCFLAAIWHWVYWDLEIF

Query:  CDERTGKPSLDLPKIFGIHLFLSGLDYFGFGSFHDKGL
        CDERTGKPSLDLPKIFGIHLFL+G+  FGFG+FH  GL
Subjt:  CDERTGKPSLDLPKIFGIHLFLSGLDYFGFGSFHDKGL

TYH01476.1 hypothetical protein ES288_A09G061500v1 [Gossypium darwinii]3.3e-5466.86Show/hide
Query:  MGLPWYRVHTVVLNDPGRLLSVHIMHTALVFVWADSMVLYELAIFYPSIPVLDPMWRQGDI-------SNVETRRQGMFVISCSYVFSGLCFLAAIWHWV
        MGLPWYRVHTVVLNDPGRLLSVHIMHTALV  WA SM LYELA+F PS PVLDPMWRQG           +     G  V     VFSGLCFLAAIWHWV
Subjt:  MGLPWYRVHTVVLNDPGRLLSVHIMHTALVFVWADSMVLYELAIFYPSIPVLDPMWRQGDI-------SNVETRRQGMFVISCSYVFSGLCFLAAIWHWV

Query:  YWDLEIFCDERTGKPSLDLPKIFGIHLFLSGLDYFGFGSFHDKGL-KKFLWQHSVHYRFGFNNQTDPCN
        YWDLEIFCDERTGKPSLDLPKIFGIHLFLSG+  FGFG+FH  GL    +W   V   +G   +  P N
Subjt:  YWDLEIFCDERTGKPSLDLPKIFGIHLFLSGLDYFGFGSFHDKGL-KKFLWQHSVHYRFGFNNQTDPCN

TrEMBL top hitse value%identityAlignment
A0A2G3BRB8 Photosystem II CP47 reaction center protein6.1e-5468.32Show/hide
Query:  MGLPWYRVHTVVLNDPGRLLSVHIMHTALVFVWADSMVLYELAIFYPSIPVLDPMWRQG-------------------DISNVETRRQGMF----VISCS
        MGLPWYRVHTVVLNDPGRLLSVHIMHTALV  WA SM LYELA+FYPS PVLDPMWRQG                    I+       G++    V    
Subjt:  MGLPWYRVHTVVLNDPGRLLSVHIMHTALVFVWADSMVLYELAIFYPSIPVLDPMWRQG-------------------DISNVETRRQGMF----VISCS

Query:  YVFSGLCFLAAIWHWVYWDLEIFCDERTGKPSLDLPKIFGIHLFLSGLDYFGFGSFHDKGL
         VFSGLCFLAAIWHWVYWDLEIFCDERTGKPSLDLPKIFGIHLFLSG+  FGFG+FH  GL
Subjt:  YVFSGLCFLAAIWHWVYWDLEIFCDERTGKPSLDLPKIFGIHLFLSGLDYFGFGSFHDKGL

A0A5D2BJZ9 Uncharacterized protein6.1e-5473.79Show/hide
Query:  MGLPWYRVHTVVLNDPGRLLSVHIMHTALVFVWADSMVLYELAIFYPSIPVLDPMWRQGDI-------SNVETRRQGMFVISCSYVFSGLCFLAAIWHWV
        MG PWYRVHTVVLNDPGRLLSVHIMHTALV  WA SM LYELA+F PS PVLDPMWRQG           +     G  V     VFSGLCFLAAIWHWV
Subjt:  MGLPWYRVHTVVLNDPGRLLSVHIMHTALVFVWADSMVLYELAIFYPSIPVLDPMWRQGDI-------SNVETRRQGMFVISCSYVFSGLCFLAAIWHWV

Query:  YWDLEIFCDERTGKPSLDLPKIFGIHLFLSGLDYFGFGSFHDKGL
        YWDLEIFCDERTGKPSLDLPKIFGIHLFLSG+  FGFG+FH  GL
Subjt:  YWDLEIFCDERTGKPSLDLPKIFGIHLFLSGLDYFGFGSFHDKGL

A0A5D2F7N8 Uncharacterized protein1.6e-5466.86Show/hide
Query:  MGLPWYRVHTVVLNDPGRLLSVHIMHTALVFVWADSMVLYELAIFYPSIPVLDPMWRQGDI-------SNVETRRQGMFVISCSYVFSGLCFLAAIWHWV
        MGLPWYRVHTVVLNDPGRLLSVHIMHTALV  WA SM LYELA+F PS PVLDPMWRQG           +     G  V     VFSGLCFLAAIWHWV
Subjt:  MGLPWYRVHTVVLNDPGRLLSVHIMHTALVFVWADSMVLYELAIFYPSIPVLDPMWRQGDI-------SNVETRRQGMFVISCSYVFSGLCFLAAIWHWV

Query:  YWDLEIFCDERTGKPSLDLPKIFGIHLFLSGLDYFGFGSFHDKGL-KKFLWQHSVHYRFGFNNQTDPCN
        YWDLEIFCDERTGKPSLDLPKIFGIHLFLSG+  FGFG+FH  GL    +W   V   +G   +  P N
Subjt:  YWDLEIFCDERTGKPSLDLPKIFGIHLFLSGLDYFGFGSFHDKGL-KKFLWQHSVHYRFGFNNQTDPCN

H2FAR2 Photosystem II CP47 reaction center protein1.0e-5368.94Show/hide
Query:  MGLPWYRVHTVVLNDPGRLLSVHIMHTALVFVWADSMVLYELAIFYPSIPVLDPMWRQG-------------------DISNVETRRQGMF----VISCS
        MGLPWYRVHTVVLNDPGRLLSVHIMHTALV  WA SM LYELA+F PS PVLDPMWRQG                   +IS       G++    V    
Subjt:  MGLPWYRVHTVVLNDPGRLLSVHIMHTALVFVWADSMVLYELAIFYPSIPVLDPMWRQG-------------------DISNVETRRQGMF----VISCS

Query:  YVFSGLCFLAAIWHWVYWDLEIFCDERTGKPSLDLPKIFGIHLFLSGLDYFGFGSFHDKGL
         VFSGLCFLAAIWHWVYWDLEIFCDERTGKPSLDLPKIFGIHLFLSGL  FGFG+FH  GL
Subjt:  YVFSGLCFLAAIWHWVYWDLEIFCDERTGKPSLDLPKIFGIHLFLSGLDYFGFGSFHDKGL

K3Z2V7 Uncharacterized protein4.7e-5473.79Show/hide
Query:  MGLPWYRVHTVVLNDPGRLLSVHIMHTALVFVWADSMVLYELAIFYPSIPVLDPMWRQGDI-------SNVETRRQGMFVISCSYVFSGLCFLAAIWHWV
        MGLPWYRVHTVVLNDPGRLLSVHIMHTALV  WA SM LYELA+F PS PVLDPMWRQG           +     G  V     VFSGLCFLAAIWHWV
Subjt:  MGLPWYRVHTVVLNDPGRLLSVHIMHTALVFVWADSMVLYELAIFYPSIPVLDPMWRQGDI-------SNVETRRQGMFVISCSYVFSGLCFLAAIWHWV

Query:  YWDLEIFCDERTGKPSLDLPKIFGIHLFLSGLDYFGFGSFHDKGL
        YWDLEIFCDERTGKPSLDLPKIFGIHLFL+G+  FGFG+FH  GL
Subjt:  YWDLEIFCDERTGKPSLDLPKIFGIHLFLSGLDYFGFGSFHDKGL

SwissProt top hitse value%identityAlignment
A4QJE1 Photosystem II CP47 reaction center protein1.4e-5561.62Show/hide
Query:  MGLPWYRVHTVVLNDPGRLLSVHIMHTALVFVWADSMVLYELAIFYPSIPVLDPMWRQG-------------------DISNVETRRQGMF----VISCS
        MGLPWYRVHTVVLNDPGRLLSVHIMHTALV  WA SM LYELA+F PS PVLDPMWRQG                   +I+       G++    V    
Subjt:  MGLPWYRVHTVVLNDPGRLLSVHIMHTALVFVWADSMVLYELAIFYPSIPVLDPMWRQG-------------------DISNVETRRQGMF----VISCS

Query:  YVFSGLCFLAAIWHWVYWDLEIFCDERTGKPSLDLPKIFGIHLFLSGLDYFGFGSFHDKGL-KKFLWQHSVHYRFGFNNQTDPCN
         VFSGLCFLAAIWHWVYWDLEIFCDERTGKPSLDLPKIFGIHLFLSG+  FGFG+FH  GL    +W   V   +G   +  P N
Subjt:  YVFSGLCFLAAIWHWVYWDLEIFCDERTGKPSLDLPKIFGIHLFLSGLDYFGFGSFHDKGL-KKFLWQHSVHYRFGFNNQTDPCN

A4QKL8 Photosystem II CP47 reaction center protein1.1e-5561.62Show/hide
Query:  MGLPWYRVHTVVLNDPGRLLSVHIMHTALVFVWADSMVLYELAIFYPSIPVLDPMWRQG-------------------DISNVETRRQGMF----VISCS
        MGLPWYRVHTVVLNDPGRLLSVHIMHTALV  WA SM LYELA+F PS PVLDPMWRQG                   +I+       G++    V +  
Subjt:  MGLPWYRVHTVVLNDPGRLLSVHIMHTALVFVWADSMVLYELAIFYPSIPVLDPMWRQG-------------------DISNVETRRQGMF----VISCS

Query:  YVFSGLCFLAAIWHWVYWDLEIFCDERTGKPSLDLPKIFGIHLFLSGLDYFGFGSFHDKGL-KKFLWQHSVHYRFGFNNQTDPCN
         VFSGLCFLAAIWHWVYWDLEIFCDERTGKPSLDLPKIFGIHLFLSG+  FGFG+FH  GL    +W   V   +G   +  P N
Subjt:  YVFSGLCFLAAIWHWVYWDLEIFCDERTGKPSLDLPKIFGIHLFLSGLDYFGFGSFHDKGL-KKFLWQHSVHYRFGFNNQTDPCN

A4QLM0 Photosystem II CP47 reaction center protein1.1e-5561.62Show/hide
Query:  MGLPWYRVHTVVLNDPGRLLSVHIMHTALVFVWADSMVLYELAIFYPSIPVLDPMWRQG-------------------DISNVETRRQGMF----VISCS
        MGLPWYRVHTVVLNDPGRLLSVHIMHTALV  WA SM LYELA+F PS PVLDPMWRQG                   +I+       G++    V +  
Subjt:  MGLPWYRVHTVVLNDPGRLLSVHIMHTALVFVWADSMVLYELAIFYPSIPVLDPMWRQG-------------------DISNVETRRQGMF----VISCS

Query:  YVFSGLCFLAAIWHWVYWDLEIFCDERTGKPSLDLPKIFGIHLFLSGLDYFGFGSFHDKGL-KKFLWQHSVHYRFGFNNQTDPCN
         VFSGLCFLAAIWHWVYWDLEIFCDERTGKPSLDLPKIFGIHLFLSG+  FGFG+FH  GL    +W   V   +G   +  P N
Subjt:  YVFSGLCFLAAIWHWVYWDLEIFCDERTGKPSLDLPKIFGIHLFLSGLDYFGFGSFHDKGL-KKFLWQHSVHYRFGFNNQTDPCN

A6MMN3 Photosystem II CP47 reaction center protein4.8e-5668.94Show/hide
Query:  MGLPWYRVHTVVLNDPGRLLSVHIMHTALVFVWADSMVLYELAIFYPSIPVLDPMWRQG-------------------DISNVETRRQGMF----VISCS
        MGLPWYRVHTVVLNDPGRLLSVHIMHTALV  WA SM LYELA+F PS PVLDPMWRQG                    IS       G++    V    
Subjt:  MGLPWYRVHTVVLNDPGRLLSVHIMHTALVFVWADSMVLYELAIFYPSIPVLDPMWRQG-------------------DISNVETRRQGMF----VISCS

Query:  YVFSGLCFLAAIWHWVYWDLEIFCDERTGKPSLDLPKIFGIHLFLSGLDYFGFGSFHDKGL
         VFSGLCFLAAIWHWVYWDLEIFCDERTGKPSLDLPKIFGIHLFLSGL  FGFG+FH  GL
Subjt:  YVFSGLCFLAAIWHWVYWDLEIFCDERTGKPSLDLPKIFGIHLFLSGLDYFGFGSFHDKGL

A7Y3H4 Photosystem II CP47 reaction center protein8.2e-5662.16Show/hide
Query:  MGLPWYRVHTVVLNDPGRLLSVHIMHTALVFVWADSMVLYELAIFYPSIPVLDPMWRQG-------------------DISNVETRRQGMF----VISCS
        MGLPWYRVHTVVLNDPGRLLSVHIMHTALV  WA SM LYELA+F PS PVLDPMWRQG                    I+       G++    V    
Subjt:  MGLPWYRVHTVVLNDPGRLLSVHIMHTALVFVWADSMVLYELAIFYPSIPVLDPMWRQG-------------------DISNVETRRQGMF----VISCS

Query:  YVFSGLCFLAAIWHWVYWDLEIFCDERTGKPSLDLPKIFGIHLFLSGLDYFGFGSFHDKGL-KKFLWQHSVHYRFGFNNQTDPCN
         VFSGLCFLAAIWHWVYWDLEIFCDERTGKPSLDLPKIFGIHLFLSGL  FGFG+FH  GL    +W   V   +G   +  P N
Subjt:  YVFSGLCFLAAIWHWVYWDLEIFCDERTGKPSLDLPKIFGIHLFLSGLDYFGFGSFHDKGL-KKFLWQHSVHYRFGFNNQTDPCN

Arabidopsis top hitse value%identityAlignment
ATCG00280.1 photosystem II reaction center protein C4.0e-0536.21Show/hide
Query:  GLPWYRVHTVVLNDPGRLLSVHIMHTALVFVWADSMVLYELAIFYPSIPVLDPMWRQG
        G  W+  +  ++N  G+LL  H+ H  L+  WA +M L+E+A F P      PM+ QG
Subjt:  GLPWYRVHTVVLNDPGRLLSVHIMHTALVFVWADSMVLYELAIFYPSIPVLDPMWRQG

ATCG00680.1 photosystem II reaction center protein B2.2e-5661.08Show/hide
Query:  MGLPWYRVHTVVLNDPGRLLSVHIMHTALVFVWADSMVLYELAIFYPSIPVLDPMWRQG-------------------DISNVETRRQGMF----VISCS
        MGLPWYRVHTVVLNDPGRLL+VHIMHTALV  WA SM LYELA+F PS PVLDPMWRQG                   +I+       G++    V    
Subjt:  MGLPWYRVHTVVLNDPGRLLSVHIMHTALVFVWADSMVLYELAIFYPSIPVLDPMWRQG-------------------DISNVETRRQGMF----VISCS

Query:  YVFSGLCFLAAIWHWVYWDLEIFCDERTGKPSLDLPKIFGIHLFLSGLDYFGFGSFHDKGL-KKFLWQHSVHYRFGFNNQTDPCN
         VFSGLCFLAAIWHWVYWDLEIFCDERTGKPSLDLPKIFGIHLFLSG+  FGFG+FH  GL    +W   V   +G   +  P N
Subjt:  YVFSGLCFLAAIWHWVYWDLEIFCDERTGKPSLDLPKIFGIHLFLSGLDYFGFGSFHDKGL-KKFLWQHSVHYRFGFNNQTDPCN


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGTTTGCCTTGGTATCGTGTTCATACGGTTGTATTGAATGATCCCGGTCGTTTGCTTTCTGTTCATATAATGCATACAGCTCTAGTTTTTGTTTGGGCCGATTCAAT
GGTCCTATACGAATTAGCAATTTTTTATCCCTCTATTCCTGTTCTTGATCCAATGTGGAGACAAGGAGACATATCCAATGTGGAGACAAGGAGACAAGGTATGTTCGTTA
TATCTTGTTCATACGTGTTTTCTGGATTGTGCTTCTTAGCAGCTATCTGGCATTGGGTGTATTGGGATCTAGAAATATTTTGTGATGAACGTACAGGAAAACCTTCTTTG
GATTTGCCGAAGATTTTTGGAATTCATTTATTTCTCTCCGGGTTGGATTACTTTGGTTTTGGATCATTTCACGATAAGGGTTTGAAGAAGTTCTTATGGCAACATAGTGT
TCACTACCGGTTTGGGTTTAACAATCAAACCGACCCATGTAACCATGTGCGTGACCATACAAGTGCACGGTGA
mRNA sequenceShow/hide mRNA sequence
ATGGGTTTGCCTTGGTATCGTGTTCATACGGTTGTATTGAATGATCCCGGTCGTTTGCTTTCTGTTCATATAATGCATACAGCTCTAGTTTTTGTTTGGGCCGATTCAAT
GGTCCTATACGAATTAGCAATTTTTTATCCCTCTATTCCTGTTCTTGATCCAATGTGGAGACAAGGAGACATATCCAATGTGGAGACAAGGAGACAAGGTATGTTCGTTA
TATCTTGTTCATACGTGTTTTCTGGATTGTGCTTCTTAGCAGCTATCTGGCATTGGGTGTATTGGGATCTAGAAATATTTTGTGATGAACGTACAGGAAAACCTTCTTTG
GATTTGCCGAAGATTTTTGGAATTCATTTATTTCTCTCCGGGTTGGATTACTTTGGTTTTGGATCATTTCACGATAAGGGTTTGAAGAAGTTCTTATGGCAACATAGTGT
TCACTACCGGTTTGGGTTTAACAATCAAACCGACCCATGTAACCATGTGCGTGACCATACAAGTGCACGGTGA
Protein sequenceShow/hide protein sequence
MGLPWYRVHTVVLNDPGRLLSVHIMHTALVFVWADSMVLYELAIFYPSIPVLDPMWRQGDISNVETRRQGMFVISCSYVFSGLCFLAAIWHWVYWDLEIFCDERTGKPSL
DLPKIFGIHLFLSGLDYFGFGSFHDKGLKKFLWQHSVHYRFGFNNQTDPCNHVRDHTSAR