; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

CmoCh17G009930 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh17G009930
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
DescriptionDNA-directed RNA polymerase III subunit RPC8
Genome locationCmo_Chr17:8571447..8575024
RNA-Seq ExpressionCmoCh17G009930
SyntenyCmoCh17G009930
Gene Ontology termsGO:0006384 - transcription initiation from RNA polymerase III promoter (biological process)
GO:0005666 - RNA polymerase III complex (cellular component)
GO:0003899 - DNA-directed 5'-3' RNA polymerase activity (molecular function)
InterPro domainsIPR005576 - RNA polymerase Rpb7-like , N-terminal
IPR013238 - RNA polymerase III, subunit Rpc25
IPR036898 - RNA polymerase Rpb7-like, N-terminal domain superfamily
IPR045113 - RNA polymerase Rpb7-like


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6575744.1 DNA-directed RNA polymerase III subunit RPC8, partial [Cucurbita argyrosperma subsp. sororia]5.9e-9782.3Show/hide
Query:  MLHLPILDAIKGELEKLFLDKVVAKLGLCISVYDIRSVDGGFIFPSDGAATYKVFLHSSDSTIAFSCLTYISSSKRHLGCVHIDCVSSIRGGDNYWKISL
        MLHLPILDAIKGELEKLFLDKVVAKLGLCISVYDIRSVDGGFIFPSDGAATYKV          F+ + +    + + G + I  V       N  +ISL
Subjt:  MLHLPILDAIKGELEKLFLDKVVAKLGLCISVYDIRSVDGGFIFPSDGAATYKVFLHSSDSTIAFSCLTYISSSKRHLGCVHIDCVSSIRGGDNYWKISL

Query:  GFFEDIYVPIHLLPSPSEFKPDPKNGGKRRWVWDYDGQPYDIYETDEIKFRIHSIDYPAIPVDQQPNESNSKFQMEEQPKENVNVKPFAPMVVTATIDYD
        GFFEDIYVPIHLLPSPSEFKPDPKNGGKRRWVWDYDGQPYDIYETDEIKFRIHSIDYPAIPVDQQPNESNSKFQMEEQPKENVNVKPFAPMVVTATIDYD
Subjt:  GFFEDIYVPIHLLPSPSEFKPDPKNGGKRRWVWDYDGQPYDIYETDEIKFRIHSIDYPAIPVDQQPNESNSKFQMEEQPKENVNVKPFAPMVVTATIDYD

Query:  GLGPVSWWDGSGDADADAEAEAEEDS
        GLGPVSWWDGSGDADA+ EAEAEEDS
Subjt:  GLGPVSWWDGSGDADADAEAEAEEDS

KAG7014295.1 DNA-directed RNA polymerase III subunit RPC8 [Cucurbita argyrosperma subsp. argyrosperma]1.0e-10483.06Show/hide
Query:  MFYLSRIEHTLRVPPSMLHLPILDAIKGELEKLFLDKVVAKLGLCISVYDIRSVDGGFIFPSDGAATYKVFLHSSDSTIAFSCLTYISSSKRHLGCVHID
        MFYLSRIEHTLRVPPSMLHLPILDAIKGELEKLFLDKVVAKLGLCISVYDIRSVDGGFIFPSDGAATYKV          F+ + +    + + G + I 
Subjt:  MFYLSRIEHTLRVPPSMLHLPILDAIKGELEKLFLDKVVAKLGLCISVYDIRSVDGGFIFPSDGAATYKVFLHSSDSTIAFSCLTYISSSKRHLGCVHID

Query:  CVSSIRGGDNYWKISLGFFEDIYVPIHLLPSPSEFKPDPKNGGKRRWVWDYDGQPYDIYETDEIKFRIHSIDYPAIPVDQQPNESNSKFQMEEQPKENVN
         V       N  +ISLGFFEDIYVPIHLLPSPSEFKPDPKNGGKRRWVWDYDGQPYDIYETDEIKFRIHSIDYPAIPVDQQPNESNSKFQMEEQPKENVN
Subjt:  CVSSIRGGDNYWKISLGFFEDIYVPIHLLPSPSEFKPDPKNGGKRRWVWDYDGQPYDIYETDEIKFRIHSIDYPAIPVDQQPNESNSKFQMEEQPKENVN

Query:  VKPFAPMVVTATIDYDGLGPVSWWDGSGDADADAEAEAEEDS
        VKPFAPMVVTATIDYDGLGPVSWWDGSG  DADAE EAEEDS
Subjt:  VKPFAPMVVTATIDYDGLGPVSWWDGSGDADADAEAEAEEDS

XP_022954042.1 DNA-directed RNA polymerase III subunit RPC8 [Cucurbita moschata]1.3e-10784.3Show/hide
Query:  MFYLSRIEHTLRVPPSMLHLPILDAIKGELEKLFLDKVVAKLGLCISVYDIRSVDGGFIFPSDGAATYKVFLHSSDSTIAFSCLTYISSSKRHLGCVHID
        MFYLSRIEHTLRVPPSMLHLPILDAIKGELEKLFLDKVVAKLGLCISVYDIRSVDGGFIFPSDGAATYKV          F+ + +    + + G + I 
Subjt:  MFYLSRIEHTLRVPPSMLHLPILDAIKGELEKLFLDKVVAKLGLCISVYDIRSVDGGFIFPSDGAATYKVFLHSSDSTIAFSCLTYISSSKRHLGCVHID

Query:  CVSSIRGGDNYWKISLGFFEDIYVPIHLLPSPSEFKPDPKNGGKRRWVWDYDGQPYDIYETDEIKFRIHSIDYPAIPVDQQPNESNSKFQMEEQPKENVN
         V       N  +ISLGFFEDIYVPIHLLPSPSEFKPDPKNGGKRRWVWDYDGQPYDIYETDEIKFRIHSIDYPAIPVDQQPNESNSKFQMEEQPKENVN
Subjt:  CVSSIRGGDNYWKISLGFFEDIYVPIHLLPSPSEFKPDPKNGGKRRWVWDYDGQPYDIYETDEIKFRIHSIDYPAIPVDQQPNESNSKFQMEEQPKENVN

Query:  VKPFAPMVVTATIDYDGLGPVSWWDGSGDADADAEAEAEEDS
        VKPFAPMVVTATIDYDGLGPVSWWDGSGDADADAEAEAEEDS
Subjt:  VKPFAPMVVTATIDYDGLGPVSWWDGSGDADADAEAEAEEDS

XP_022991804.1 DNA-directed RNA polymerase III subunit RPC8 [Cucurbita maxima]6.5e-10481.97Show/hide
Query:  MFYLSRIEHTLRVPPSMLHLPILDAIKGELEKLFLDKVVAKLGLCISVYDIRSVDGGFIFPSDGAATYKVFLHSSDSTIAFSCLTYISSSKRHLGCVHID
        MFYLSRIEHTLRVPPSMLHLPILDAIKGELEKLFLDKVVA LGLCISVYDIRSVDGGFIFPSDGAATYKV          F+ + +    + + G + I 
Subjt:  MFYLSRIEHTLRVPPSMLHLPILDAIKGELEKLFLDKVVAKLGLCISVYDIRSVDGGFIFPSDGAATYKVFLHSSDSTIAFSCLTYISSSKRHLGCVHID

Query:  CVSSIRGGDNYWKISLGFFEDIYVPIHLLPSPSEFKPDPKNGGKRRWVWDYDGQPYDIYETDEIKFRIHSIDYPAIPVDQQPNESNSKFQMEEQPKENVN
         V       N  +ISLGFFEDIYVPIHLLPSPSEFKPDPKN GKRRWVWDYDGQPYDIYETDEIKFRIHSIDYP IPVDQQPNESNSKFQMEEQPKENVN
Subjt:  CVSSIRGGDNYWKISLGFFEDIYVPIHLLPSPSEFKPDPKNGGKRRWVWDYDGQPYDIYETDEIKFRIHSIDYPAIPVDQQPNESNSKFQMEEQPKENVN

Query:  VKPFAPMVVTATIDYDGLGPVSWWDGSGDAD--ADAEAEAEEDS
        VKPFAPMVVTATIDYDGLGPVSWWDGSGDAD  A+AEAEAEEDS
Subjt:  VKPFAPMVVTATIDYDGLGPVSWWDGSGDAD--ADAEAEAEEDS

XP_023547503.1 DNA-directed RNA polymerase III subunit RPC8 [Cucurbita pepo subsp. pepo]1.3e-10483.06Show/hide
Query:  MFYLSRIEHTLRVPPSMLHLPILDAIKGELEKLFLDKVVAKLGLCISVYDIRSVDGGFIFPSDGAATYKVFLHSSDSTIAFSCLTYISSSKRHLGCVHID
        MFYLSRIEHTLRVPPSMLHLPILDAIKGELEKLFLDKVVA LGLCISVYDIRSVDGGFIFPSDGAATYKV          F+ + +    + + G + I 
Subjt:  MFYLSRIEHTLRVPPSMLHLPILDAIKGELEKLFLDKVVAKLGLCISVYDIRSVDGGFIFPSDGAATYKVFLHSSDSTIAFSCLTYISSSKRHLGCVHID

Query:  CVSSIRGGDNYWKISLGFFEDIYVPIHLLPSPSEFKPDPKNGGKRRWVWDYDGQPYDIYETDEIKFRIHSIDYPAIPVDQQPNESNSKFQMEEQPKENVN
         V       N  +ISLGFFEDIYVPIHLLPSPSEFKPDPKNGGKRRWVWDYDGQPYDIYETDEIKFRIHSIDYPAIPVDQQPNESNSKFQMEEQPKENVN
Subjt:  CVSSIRGGDNYWKISLGFFEDIYVPIHLLPSPSEFKPDPKNGGKRRWVWDYDGQPYDIYETDEIKFRIHSIDYPAIPVDQQPNESNSKFQMEEQPKENVN

Query:  VKPFAPMVVTATIDYDGLGPVSWWDGSGDADADAEAEAEEDS
        VKPFAPMVVTATIDYDGLGPVSWWDGSGDADAD  AEAEEDS
Subjt:  VKPFAPMVVTATIDYDGLGPVSWWDGSGDADADAEAEAEEDS

TrEMBL top hitse value%identityAlignment
A0A0A0K846 Uncharacterized protein3.6e-8469.01Show/hide
Query:  MFYLSRIEHTLRVPPSMLHLPILDAIKGELEKLFLDKVVAKLGLCISVYDIRSVDGGFIFPSDGAATYKVFLHSSDSTIAFSCLTYISSSKRHLGCVHID
        MFYLSRIEHTLRVPPS+L+LPILDAIKGELEKLF+DKVVA LGLCISVYDIRSVDGGFIFPSDGAATYKV      + I F   T         G V I 
Subjt:  MFYLSRIEHTLRVPPSMLHLPILDAIKGELEKLFLDKVVAKLGLCISVYDIRSVDGGFIFPSDGAATYKVFLHSSDSTIAFSCLTYISSSKRHLGCVHID

Query:  CVSSIRGGDNYWKISLGFFEDIYVPIHLLPSPSEFKPDPKNGGKRRWVWDYDGQPYDIYETDEIKFRIHSIDYPAIPVDQQPNESNSKFQMEEQPKENVN
         V      +N  +ISLGFFEDIYVP+ L+PS SEF PD  NGG+ RWVW Y+  P+DIYE+DEIKF++HSI+YPAI V +QP ESNSKF MEE+PKE++N
Subjt:  CVSSIRGGDNYWKISLGFFEDIYVPIHLLPSPSEFKPDPKNGGKRRWVWDYDGQPYDIYETDEIKFRIHSIDYPAIPVDQQPNESNSKFQMEEQPKENVN

Query:  VKPFAPMVVTATIDYDGLGPVSWWDGSGDADADAEAEAEEDS
        VKPFAPMV+TA++D DGLGPVSWWDGSG+A+A+ E E EEDS
Subjt:  VKPFAPMVVTATIDYDGLGPVSWWDGSGDADADAEAEAEEDS

A0A5A7UWI5 DNA-directed RNA polymerase III subunit RPC8 isoform X16.1e-8469.83Show/hide
Query:  MFYLSRIEHTLRVPPSMLHLPILDAIKGELEKLFLDKVVAKLGLCISVYDIRSVDGGFIFPSDGAATYKVFLHSSDSTIAFSCLTYISSSKRHLGCVHID
        MFYLSRIEHTLRVPPS+L+LPILDAIKGELEKLF+DKVVA LGLCISVYDIRSVDGGFIFPSDGAATYKV      + I F   T         G V I 
Subjt:  MFYLSRIEHTLRVPPSMLHLPILDAIKGELEKLFLDKVVAKLGLCISVYDIRSVDGGFIFPSDGAATYKVFLHSSDSTIAFSCLTYISSSKRHLGCVHID

Query:  CVSSIRGGDNYWKISLGFFEDIYVPIHLLPSPSEFKPDPKNGGKRRWVWDYDGQPYDIYETDEIKFRIHSIDYPAIPVDQQPNESNSKFQMEEQPKENVN
         V      +N  +ISLGFFEDIYVP+ L+PS SEF PD  NGG+RRWVW Y+  P+DIYE+DEIKF+IHSI+YPAI V +QP ESNSKF MEE+PKE++N
Subjt:  CVSSIRGGDNYWKISLGFFEDIYVPIHLLPSPSEFKPDPKNGGKRRWVWDYDGQPYDIYETDEIKFRIHSIDYPAIPVDQQPNESNSKFQMEEQPKENVN

Query:  VKPFAPMVVTATIDYDGLGPVSWWDGSGDADADAEAEAEEDS
        VKPFAPMV+TA++D DGLGPVSWWDGSG  +A+AE E EEDS
Subjt:  VKPFAPMVVTATIDYDGLGPVSWWDGSGDADADAEAEAEEDS

A0A6J1DFX3 DNA-directed RNA polymerase III subunit RPC8 isoform X22.1e-9275Show/hide
Query:  MFYLSRIEHTLRVPPSMLHLPILDAIKGELEKLFLDKVVAKLGLCISVYDIRSVDGGFIFPSDGAATYKVFLHSSDSTIAFSCLTYISSSKRHLGCVHID
        MFYLSRIEHTLRVPPSMLHLPILDAIKGELEKLFLDKVVA LGLCISVYDIRSVDGGFIFPSDGAATYKV          F+ + +    + ++G + I 
Subjt:  MFYLSRIEHTLRVPPSMLHLPILDAIKGELEKLFLDKVVAKLGLCISVYDIRSVDGGFIFPSDGAATYKVFLHSSDSTIAFSCLTYISSSKRHLGCVHID

Query:  CVSSIRGGDNYWKISLGFFEDIYVPIHLLPSPSEFKPDPKNGGKRRWVWDYDGQPYDIYETDEIKFRIHSIDYPAIPVDQQPNESNSKFQMEE-QPKENV
         V       N  +ISLGFFEDIYVPIHLLP+PSEFKPD KNGGKRRWVWDYDGQPYDIYETDEIKFRIH+I+YPAIPV +QP ESN KF  EE QPKE+ 
Subjt:  CVSSIRGGDNYWKISLGFFEDIYVPIHLLPSPSEFKPDPKNGGKRRWVWDYDGQPYDIYETDEIKFRIHSIDYPAIPVDQQPNESNSKFQMEE-QPKENV

Query:  -NVKPFAPMVVTATIDYDGLGPVSWWDGSGDADADAEAEAEEDS
         NVK FAPM+VT TIDYDGLGPVSWWDGSGD D +AE  AEEDS
Subjt:  -NVKPFAPMVVTATIDYDGLGPVSWWDGSGDADADAEAEAEEDS

A0A6J1GPX5 DNA-directed RNA polymerase III subunit RPC86.1e-10884.3Show/hide
Query:  MFYLSRIEHTLRVPPSMLHLPILDAIKGELEKLFLDKVVAKLGLCISVYDIRSVDGGFIFPSDGAATYKVFLHSSDSTIAFSCLTYISSSKRHLGCVHID
        MFYLSRIEHTLRVPPSMLHLPILDAIKGELEKLFLDKVVAKLGLCISVYDIRSVDGGFIFPSDGAATYKV          F+ + +    + + G + I 
Subjt:  MFYLSRIEHTLRVPPSMLHLPILDAIKGELEKLFLDKVVAKLGLCISVYDIRSVDGGFIFPSDGAATYKVFLHSSDSTIAFSCLTYISSSKRHLGCVHID

Query:  CVSSIRGGDNYWKISLGFFEDIYVPIHLLPSPSEFKPDPKNGGKRRWVWDYDGQPYDIYETDEIKFRIHSIDYPAIPVDQQPNESNSKFQMEEQPKENVN
         V       N  +ISLGFFEDIYVPIHLLPSPSEFKPDPKNGGKRRWVWDYDGQPYDIYETDEIKFRIHSIDYPAIPVDQQPNESNSKFQMEEQPKENVN
Subjt:  CVSSIRGGDNYWKISLGFFEDIYVPIHLLPSPSEFKPDPKNGGKRRWVWDYDGQPYDIYETDEIKFRIHSIDYPAIPVDQQPNESNSKFQMEEQPKENVN

Query:  VKPFAPMVVTATIDYDGLGPVSWWDGSGDADADAEAEAEEDS
        VKPFAPMVVTATIDYDGLGPVSWWDGSGDADADAEAEAEEDS
Subjt:  VKPFAPMVVTATIDYDGLGPVSWWDGSGDADADAEAEAEEDS

A0A6J1JVU8 DNA-directed RNA polymerase III subunit RPC83.1e-10481.97Show/hide
Query:  MFYLSRIEHTLRVPPSMLHLPILDAIKGELEKLFLDKVVAKLGLCISVYDIRSVDGGFIFPSDGAATYKVFLHSSDSTIAFSCLTYISSSKRHLGCVHID
        MFYLSRIEHTLRVPPSMLHLPILDAIKGELEKLFLDKVVA LGLCISVYDIRSVDGGFIFPSDGAATYKV          F+ + +    + + G + I 
Subjt:  MFYLSRIEHTLRVPPSMLHLPILDAIKGELEKLFLDKVVAKLGLCISVYDIRSVDGGFIFPSDGAATYKVFLHSSDSTIAFSCLTYISSSKRHLGCVHID

Query:  CVSSIRGGDNYWKISLGFFEDIYVPIHLLPSPSEFKPDPKNGGKRRWVWDYDGQPYDIYETDEIKFRIHSIDYPAIPVDQQPNESNSKFQMEEQPKENVN
         V       N  +ISLGFFEDIYVPIHLLPSPSEFKPDPKN GKRRWVWDYDGQPYDIYETDEIKFRIHSIDYP IPVDQQPNESNSKFQMEEQPKENVN
Subjt:  CVSSIRGGDNYWKISLGFFEDIYVPIHLLPSPSEFKPDPKNGGKRRWVWDYDGQPYDIYETDEIKFRIHSIDYPAIPVDQQPNESNSKFQMEEQPKENVN

Query:  VKPFAPMVVTATIDYDGLGPVSWWDGSGDAD--ADAEAEAEEDS
        VKPFAPMVVTATIDYDGLGPVSWWDGSGDAD  A+AEAEAEEDS
Subjt:  VKPFAPMVVTATIDYDGLGPVSWWDGSGDAD--ADAEAEAEEDS

SwissProt top hitse value%identityAlignment
O94285 DNA-directed RNA polymerase III subunit rpc81.2e-1527.16Show/hide
Query:  MFYLSRIEHTLRVPPSMLHLPILDAIKGELEKLFLDKVVAKLGLCISVYDIRSVDGGFIFPSDGAATYKVFLHSSDSTIAFSCLTYISSSKRHLGCVHID
        MF LSR    + + PS    P  +A+  E+ K + +KV+  +GL I VYD   +  G I   DG         SS   + F  + +    +   G V + 
Subjt:  MFYLSRIEHTLRVPPSMLHLPILDAIKGELEKLFLDKVVAKLGLCISVYDIRSVDGGFIFPSDGAATYKVFLHSSDSTIAFSCLTYISSSKRHLGCVHID

Query:  CVSSIRGGDNYWKISLGFFEDIYVPIHLLPSPSEFKPDPKNGGKRRWVWDYDGQP--------YDIYETDEIKFRIHSIDYPAIPVDQQPNESNSKFQME
         + S    +   ++++ FF+DI++P  +L  P  F+PD     +R WVW  +G+         +DI E  EI+F+I S D+  + +  + N++ +     
Subjt:  CVSSIRGGDNYWKISLGFFEDIYVPIHLLPSPSEFKPDPKNGGKRRWVWDYDGQP--------YDIYETDEIKFRIHSIDYPAIPVDQQPNESNSKFQME

Query:  EQPKENVNVKPFAPMVVTATIDYDGLGPVSWW
        E       ++  +P  + A+   DGLG  +WW
Subjt:  EQPKENVNVKPFAPMVVTATIDYDGLGPVSWW

P35718 DNA-directed RNA polymerase III subunit RPC81.8e-1627.9Show/hide
Query:  MFYLSRIEHTLRVPPSMLHLPILDAIKGELEKLFLDKVVAKLGLCISVYDIRSVDGGFIFPSDGAATYKVFLHSSDSTIAFSCLTYISSSKRHLGCVHID
        MF LS+I   +R+PP   H   + AI  +L   F +K++  +GLCI++YD+ +V+ G + P DG         SS   + F  + +    K  LG +   
Subjt:  MFYLSRIEHTLRVPPSMLHLPILDAIKGELEKLFLDKVVAKLGLCISVYDIRSVDGGFIFPSDGAATYKVFLHSSDSTIAFSCLTYISSSKRHLGCVHID

Query:  CVSSIRGGDNYWKIS-LGFFEDIYVPIHLLPSPSEFKPDPKNGGKRRWVWDYDGQPYDIYETDE-IKFRI-HSIDYPAIPVDQQPNESNSKFQMEEQ---
         +S         K+S LG F+DI++P ++L     + P+     +  W+W  D +    ++ +E I+FRI   +     P   +  E   + Q+E +   
Subjt:  CVSSIRGGDNYWKIS-LGFFEDIYVPIHLLPSPSEFKPDPKNGGKRRWVWDYDGQPYDIYETDE-IKFRI-HSIDYPAIPVDQQPNESNSKFQMEEQ---

Query:  --PKENVNVKPFAPMVVTATIDYDGLGPVSWWD
           +   N KP A   +  +   DG+G VSWW+
Subjt:  --PKENVNVKPFAPMVVTATIDYDGLGPVSWWD

Q2T9X1 DNA-directed RNA polymerase III subunit RPC83.3e-1829.66Show/hide
Query:  MFYLSRIEHTLRVPPSMLHLPILDAIKGELEKLFLDKVVAKLGLCISVYDIRSVDGGFIFPSDGAATYKVFLHSSDSTIAFSCLTYISSSKRHLGC----
        MF L  +  T+R+PP      + D+I  EL K   +KV+  +GLCI ++DI  ++  ++FP DGA+  KV        +    L  I   K   GC    
Subjt:  MFYLSRIEHTLRVPPSMLHLPILDAIKGELEKLFLDKVVAKLGLCISVYDIRSVDGGFIFPSDGAATYKVFLHSSDSTIAFSCLTYISSSKRHLGC----

Query:  VHIDCVSSIRGGDNYWKISLGFFEDIYVPIHLLPSPSEFKPDPKNGGKRRWVWDYDGQ--PYDIYET--DEIKFRIHSIDYPAIPVDQQ-PNESNSKFQM
        VH               +SLGFF+DI +P   L  P++F     +  ++ WVW+Y+ +   +D+Y    +E++FR+  +D   +      P+ + +    
Subjt:  VHIDCVSSIRGGDNYWKISLGFFEDIYVPIHLLPSPSEFKPDPKNGGKRRWVWDYDGQ--PYDIYET--DEIKFRIHSIDYPAIPVDQQ-PNESNSKFQM

Query:  EEQPKENVNVKPFAPMVVTATIDYDGLGPVSWWDGS
        EE PK+       AP  +  +I   GLG +SWW  S
Subjt:  EEQPKENVNVKPFAPMVVTATIDYDGLGPVSWWDGS

Q9D2C6 DNA-directed RNA polymerase III subunit RPC81.1e-1830.47Show/hide
Query:  MFYLSRIEHTLRVPPSMLHLPILDAIKGELEKLFLDKVVAKLGLCISVYDIRSVDGGFIFPSDGAATYKVFLHSSDSTIAFSCLTYISSSKRHLGC----
        MF L  +  T+R+PP      + D+I  EL K   +KVV  +GLCI ++DI  ++  ++FP DGA+  KV        +    L  I   K   GC    
Subjt:  MFYLSRIEHTLRVPPSMLHLPILDAIKGELEKLFLDKVVAKLGLCISVYDIRSVDGGFIFPSDGAATYKVFLHSSDSTIAFSCLTYISSSKRHLGC----

Query:  VHIDCVSSIRGGDNYWKISLGFFEDIYVPIHLLPSPSEFKPDPKNGGKRRWVWDYDGQ--PYDIY--ETDEIKFRIHSIDYPAIPVDQQ-PNESNSKFQM
        VH               +SLGFF+DI +P   L  P++F     +  ++ WVW+Y+ +   +D+Y    +EI+FR+  +D   +      P+ + +    
Subjt:  VHIDCVSSIRGGDNYWKISLGFFEDIYVPIHLLPSPSEFKPDPKNGGKRRWVWDYDGQ--PYDIY--ETDEIKFRIHSIDYPAIPVDQQ-PNESNSKFQM

Query:  EEQPKENVNVKPFAPMVVTATIDYDGLGPVSWW
        EE PK+       AP  +  +I   GLG +SWW
Subjt:  EEQPKENVNVKPFAPMVVTATIDYDGLGPVSWW

Q9Y535 DNA-directed RNA polymerase III subunit RPC82.7e-2030Show/hide
Query:  MFYLSRIEHTLRVPPSMLHLPILDAIKGELEKLFLDKVVAKLGLCISVYDIRSVDGGFIFPSDGAATYKVFLHSSDSTIAFSCLTYISSSKRHLGCVHID
        MF L  +  T+R+PP      + D+I  EL K   +KVV  +GLCI ++DI  ++  ++FP DGA+  KV          F C+ +       L      
Subjt:  MFYLSRIEHTLRVPPSMLHLPILDAIKGELEKLFLDKVVAKLGLCISVYDIRSVDGGFIFPSDGAATYKVFLHSSDSTIAFSCLTYISSSKRHLGCVHID

Query:  CVSSIRG-GDNYWKISLGFFEDIYVPIHLLPSPSEFKPDPKNGGKRRWVWDYDGQ--PYDIY--ETDEIKFRIHSIDYPAIPVDQQ-PNESNSKFQMEEQ
         +  I+G       +SLGFF+DI +P   L  P++F     +  ++ WVW+Y+ +   +D+Y    +EI+FR+  +D   +      P+ +++    EE 
Subjt:  CVSSIRG-GDNYWKISLGFFEDIYVPIHLLPSPSEFKPDPKNGGKRRWVWDYDGQ--PYDIY--ETDEIKFRIHSIDYPAIPVDQQ-PNESNSKFQMEEQ

Query:  PKENVNVKPFAPMVVTATIDYDGLGPVSWW
        PK+       AP  +  +I   GLG +SWW
Subjt:  PKENVNVKPFAPMVVTATIDYDGLGPVSWW

Arabidopsis top hitse value%identityAlignment
AT1G06790.1 RNA polymerase Rpb7 N-terminal domain-containing protein4.0e-5145.57Show/hide
Query:  MFYLSRIEHTLRVPPSMLHLPILDAIKGELEKLFLDKVVAKLGLCISVYDIRSVDGGFIFPSDGAATYKVFLHSSDSTIAFSCLTYISSSKRHLGCVHID
        MFYLS +EH+LRVPP +L+LP+ DAIK  L+ +FLDKV+A LGLC+S+YDI+SV+GGF+ P DGAATYKV L              I   +  +G V   
Subjt:  MFYLSRIEHTLRVPPSMLHLPILDAIKGELEKLFLDKVVAKLGLCISVYDIRSVDGGFIFPSDGAATYKVFLHSSDSTIAFSCLTYISSSKRHLGCVHID

Query:  CVSSIRGGD-NYWKISLGFFEDIYVPIHLLPSPSEFKPDPKNGGKRRWVWDYDGQPYDIYETD---EIKFRIHSIDYPAIPVDQQPNESNSKFQMEEQPK
          +  +  D N  +++LGFF+DIYVP  L+P P+  +PDP N  +  WVW+Y G+P + Y  D   +IKFR+ SI YP++P ++                
Subjt:  CVSSIRGGD-NYWKISLGFFEDIYVPIHLLPSPSEFKPDPKNGGKRRWVWDYDGQPYDIYETD---EIKFRIHSIDYPAIPVDQQPNESNSKFQMEEQPK

Query:  ENVNVKPFAPMVVTATIDYDGLGPVSWWDGSGDADAD
           + KPFAPMVVT  +D DGLGPVSWWD     D +
Subjt:  ENVNVKPFAPMVVTATIDYDGLGPVSWWDGSGDADAD

AT1G06790.2 RNA polymerase Rpb7 N-terminal domain-containing protein1.4e-4344.44Show/hide
Query:  MFYLSRIEHTLRVPPSMLHLPILDAIKGELEKLFLDKVVAKLGLCISVYDIRSVDGGFIFPSDGAATYKVFLHSSDSTIAFSCLTYISSSKRHLGCVHID
        MFYLS +EH+LRVPP +L+LP+ DAIK  L+ +FLDKV+A LGLC+S+YDI+SV+GGF+ P DGAATYKV L              I   +  +G V   
Subjt:  MFYLSRIEHTLRVPPSMLHLPILDAIKGELEKLFLDKVVAKLGLCISVYDIRSVDGGFIFPSDGAATYKVFLHSSDSTIAFSCLTYISSSKRHLGCVHID

Query:  CVSSIRGGD-NYWKISLGFFEDIYVPIHLLPSPSEFKPDPKNGGKRRWVWDYDGQPYDIYETD---EIKFRIHSIDYPAIPVDQQPNESNSKFQMEEQPK
          +  +  D N  +++LGFF+DIYVP  L+P P+  +PDP N  +  WVW+Y G+P + Y  D   +IKFR+ SI YP++P ++                
Subjt:  CVSSIRGGD-NYWKISLGFFEDIYVPIHLLPSPSEFKPDPKNGGKRRWVWDYDGQPYDIYETD---EIKFRIHSIDYPAIPVDQQPNESNSKFQMEEQPK

Query:  ENVNVKPFAPMVVTAT
           + KPFAPMVVT +
Subjt:  ENVNVKPFAPMVVTAT


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTTCTACCTTAGCCGAATTGAGCACACACTACGTGTGCCTCCAAGCATGCTCCATTTACCTATTCTTGATGCTATCAAGGGGGAGCTGGAGAAACTGTTCCTGGATAA
GGTTGTTGCCAAATTGGGGCTCTGTATTTCTGTTTATGATATAAGATCGGTTGATGGGGGCTTTATCTTTCCCAGCGATGGTGCTGCAACATACAAGGTATTCTTGCACT
CTTCAGATTCAACCATTGCATTCTCGTGCCTAACATATATTAGTTCTTCGAAACGACATCTGGGTTGTGTTCACATTGATTGTGTTTCGTCCATACGCGGGGGAGATAAT
TATTGGAAAATATCGCTTGGATTTTTCGAGGACATTTACGTTCCCATCCATCTTCTGCCGTCTCCATCAGAATTCAAGCCCGATCCGAAAAACGGCGGAAAACGCAGATG
GGTGTGGGACTATGATGGTCAACCATACGACATATACGAAACGGATGAGATAAAATTTAGAATACACAGCATAGATTACCCAGCAATCCCAGTGGATCAGCAGCCGAACG
AGAGTAACTCAAAATTCCAAATGGAGGAGCAACCGAAAGAGAACGTTAACGTAAAACCGTTCGCTCCCATGGTTGTCACTGCGACAATCGACTATGATGGGTTGGGTCCT
GTTTCGTGGTGGGATGGTTCAGGAGATGCCGATGCCGATGCCGAGGCCGAGGCCGAGGAAGATTCCTAA
mRNA sequenceShow/hide mRNA sequence
TCTCAGTCGCGGGCGAAGTCGCCGTGTCTCCAAGTCCATTGCTTTCATTGTACCCTTGGCGAAGGATCTTCACCGCCGCACCTCTCTCCCTCCTCCCCTCTATCGCCGCC
CCCACAAAACCCATCTTCCTCTGTCTCTGCGGCTCTCGCCGGCAGCCACTGAATCCGCTCCCCAACTGGAAAACACTTTCACTCTCATTCTTCCTCCAAAGTTTTAGTCT
TTAGACGCCCAAATCAATTGGCTTTGGGTACTGAAGAAACAGGGAGGAAGAACTAGTGACCCAGTTTGGAGATTCTTCAGAATTTCTGGGTTTCTTCAATCTTTGGTTCC
TCTGTTTGATTTCATTGCTGTCTTCGTTAAGAGCCTCAAGGAATGTGTATTGGTTGGAAGTATTAGACTTAGAGATTGTCCAAATGTTCTACCTTAGCCGAATTGAGCAC
ACACTACGTGTGCCTCCAAGCATGCTCCATTTACCTATTCTTGATGCTATCAAGGGGGAGCTGGAGAAACTGTTCCTGGATAAGGTTGTTGCCAAATTGGGGCTCTGTAT
TTCTGTTTATGATATAAGATCGGTTGATGGGGGCTTTATCTTTCCCAGCGATGGTGCTGCAACATACAAGGTATTCTTGCACTCTTCAGATTCAACCATTGCATTCTCGT
GCCTAACATATATTAGTTCTTCGAAACGACATCTGGGTTGTGTTCACATTGATTGTGTTTCGTCCATACGCGGGGGAGATAATTATTGGAAAATATCGCTTGGATTTTTC
GAGGACATTTACGTTCCCATCCATCTTCTGCCGTCTCCATCAGAATTCAAGCCCGATCCGAAAAACGGCGGAAAACGCAGATGGGTGTGGGACTATGATGGTCAACCATA
CGACATATACGAAACGGATGAGATAAAATTTAGAATACACAGCATAGATTACCCAGCAATCCCAGTGGATCAGCAGCCGAACGAGAGTAACTCAAAATTCCAAATGGAGG
AGCAACCGAAAGAGAACGTTAACGTAAAACCGTTCGCTCCCATGGTTGTCACTGCGACAATCGACTATGATGGGTTGGGTCCTGTTTCGTGGTGGGATGGTTCAGGAGAT
GCCGATGCCGATGCCGAGGCCGAGGCCGAGGAAGATTCCTAAGATCACCTTCCCATCTTGTTAGTGTGAAAAAATTGCCAAGTTGGGAGAGTCGAGCGAAGTTCCTGTTG
GCTGTTTTTCGGATCCCGCTCGTAAAGTCTAAACATTTGGGTCGAGTTGAATGAGGTATTTGAAAGGGTAAAGAGGGAATGAAGTTAAAGTAGTGATAATTATTAAGAAG
CTTTAAAGAGATCAAGGCGAGAATCTGCTAATCTAAGGGAATAAGCAGCCTTCTTGTATTGAGCCCAAGTGAAAGGCTTATATAGAGATTGGTGATTGGGGAGTATCATT
TCTGATAGAGGTGCTATCCATGCATTCAATGGTGGTGCCCCAAAGTACATGATTGACATTCTTGCCTTCTTTGAGTTGTTTGCCATTGCTCTATGCCTCACGCTTACAAA
TCTCCCATTTGTCATTGCCTGTTGTGTTCAAAAACAACAACAAATCTCAATAACCC
Protein sequenceShow/hide protein sequence
MFYLSRIEHTLRVPPSMLHLPILDAIKGELEKLFLDKVVAKLGLCISVYDIRSVDGGFIFPSDGAATYKVFLHSSDSTIAFSCLTYISSSKRHLGCVHIDCVSSIRGGDN
YWKISLGFFEDIYVPIHLLPSPSEFKPDPKNGGKRRWVWDYDGQPYDIYETDEIKFRIHSIDYPAIPVDQQPNESNSKFQMEEQPKENVNVKPFAPMVVTATIDYDGLGP
VSWWDGSGDADADAEAEAEEDS